ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart55c12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1BTBD4_HUMAN (Q86UZ6) BTB/POZ domain-containing protein 4 (Zinc f... 33 0.72
2CEZ2_HUMAN (Q8TE49) Zinc finger A20 domain-containing protein ? ... 32 0.94
3WASIP_MOUSE (Q8K1I7) Wiskott-Aldrich syndrome protein-interactin... 30 4.6
4WASIP_RAT (Q6IN36) Wiskott-Aldrich syndrome protein-interacting ... 29 7.9

>BTBD4_HUMAN (Q86UZ6) BTB/POZ domain-containing protein 4 (Zinc finger protein|
           340)
          Length = 589

 Score = 32.7 bits (73), Expect = 0.72
 Identities = 14/24 (58%), Positives = 17/24 (70%)
 Frame = -3

Query: 548 SKASTPDPIFLVDSAWPFFTRSSN 477
           S+AS+P P FL  S WPF +R SN
Sbjct: 290 SRASSPVPSFLPTSGWPFSSRDSN 313



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>CEZ2_HUMAN (Q8TE49) Zinc finger A20 domain-containing protein ? (EC 3.-.-.-)|
           (Zinc finger protein Cezanne 2) (OTU domain-containing
           protein 7)
          Length = 926

 Score = 32.3 bits (72), Expect = 0.94
 Identities = 18/41 (43%), Positives = 22/41 (53%)
 Frame = -1

Query: 493 SPGPPIPSARTY*TRGSATTCGAARRNSRTCPRPWRTPSAP 371
           SPGP    A      G+A+  G ARR S + P P R+P AP
Sbjct: 726 SPGPAAGRAARAAAGGTASPGGGARRASASGPVPGRSPPAP 766



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>WASIP_MOUSE (Q8K1I7) Wiskott-Aldrich syndrome protein-interacting protein|
           (WASP-interacting protein)
          Length = 493

 Score = 30.0 bits (66), Expect = 4.6
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = -1

Query: 502 GLSSPGPPIPSARTY*TRGSATTCGAARRNSRTCPRPWRTPSAP 371
           GL +P PP P       RG+A   G+AR+N      P+  P  P
Sbjct: 207 GLGAPRPPFPG-----NRGAAFGAGSARQNPSGSSSPFPRPPLP 245



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>WASIP_RAT (Q6IN36) Wiskott-Aldrich syndrome protein-interacting protein|
           (WASP-interacting protein)
          Length = 487

 Score = 29.3 bits (64), Expect = 7.9
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = -1

Query: 502 GLSSPGPPIPSARTY*TRGSATTCGAARRNSRTCPRPWRTPSAP 371
           GL +P PP P       RG+A   G+ R+N  +   P+  P  P
Sbjct: 202 GLGAPRPPFPG-----NRGAAFGAGSVRQNLSSSSSPFPRPPLP 240


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.134    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,509,148
Number of Sequences: 219361
Number of extensions: 522243
Number of successful extensions: 1482
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1457
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1481
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4585734400
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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