ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart55c11 |
|---|---|
| Clone Library Name | barley_pub |
>THRC_ARATH (Q9S7B5) Threonine synthase, chloroplast precursor (EC 4.2.3.1)| (TS) Length = 526 Score = 180 bits (456), Expect = 3e-45 Identities = 88/121 (72%), Positives = 95/121 (78%) Frame = +1 Query: 229 NDFSAWYEPFPPGPGSAADERYSLDEIVYRSSSGGLLDVRHDIAALARYPGSYWRDLFDS 408 N FSA Y PF PGS E YSLDEIVYRS SGGLLDV HD+ AL R+ G+YWRDLFDS Sbjct: 77 NPFSAKYVPFNAAPGST--ESYSLDEIVYRSRSGGLLDVEHDMEALKRFDGAYWRDLFDS 134 Query: 409 RVGRTVWPYGSGVWSKKEFVLPGIHPDHIVSLFEGNSNLFWAERLGRDHLAGMKDLWVKH 588 RVG++ WPYGSGVWSKKE+VLP I D IVS FEGNSNLFWAER G+ L GM DLWVKH Sbjct: 135 RVGKSTWPYGSGVWSKKEWVLPEIDDDDIVSAFEGNSNLFWAERFGKQFL-GMNDLWVKH 193 Query: 589 C 591 C Sbjct: 194 C 194
>THRC_SOLTU (Q9MT28) Threonine synthase, chloroplast precursor (EC 4.2.3.1)| (TS) Length = 519 Score = 178 bits (451), Expect = 1e-44 Identities = 87/122 (71%), Positives = 97/122 (79%) Frame = +1 Query: 226 ANDFSAWYEPFPPGPGSAADERYSLDEIVYRSSSGGLLDVRHDIAALARYPGSYWRDLFD 405 +++FSA Y PF GP S DE YSLDEIVYRS SGGLLDV+HD+ AL ++ G YWR LFD Sbjct: 69 SHNFSARYVPFNAGPNS--DEWYSLDEIVYRSRSGGLLDVQHDMDALKKFDGQYWRSLFD 126 Query: 406 SRVGRTVWPYGSGVWSKKEFVLPGIHPDHIVSLFEGNSNLFWAERLGRDHLAGMKDLWVK 585 SRVG+T WPYGSGVWSKKE+VLP I D IVS FEGNSNLFWAER G+ L GM DLWVK Sbjct: 127 SRVGKTTWPYGSGVWSKKEWVLPEIDSDDIVSAFEGNSNLFWAERFGKQFL-GMTDLWVK 185 Query: 586 HC 591 HC Sbjct: 186 HC 187
>THRC_METJA (Q58860) Probable threonine synthase (EC 4.2.3.1) (TS)| Length = 405 Score = 40.8 bits (94), Expect = 0.003 Identities = 30/99 (30%), Positives = 48/99 (48%) Frame = +1 Query: 292 YSLDEIVYRSSSGGLLDVRHDIAALARYPGSYWRDLFDSRVGRTVWPYGSGVWSKKEFVL 471 Y +DEI+Y GGLL++ +D + ++ D + GVW E+ L Sbjct: 12 YDVDEIIYTCECGGLLEIIYD-----------YEEIKDKVSEEKLRKREIGVWRYLEY-L 59 Query: 472 PGIHPDHIVSLFEGNSNLFWAERLGRDHLAGMKDLWVKH 588 P IVSL EG + L+ L ++ G+K+L+VK+ Sbjct: 60 PVKDESKIVSLCEGGTPLYRCNNLEKE--LGIKELYVKN 96
>CRMB_CAMPS (P68637) Soluble TNF receptor II precursor (Cytokine| response-modifying protein B) Length = 349 Score = 33.1 bits (74), Expect = 0.62 Identities = 20/74 (27%), Positives = 29/74 (39%) Frame = +1 Query: 253 PFPPGPGSAADERYSLDEIVYRSSSGGLLDVRHDIAALARYPGSYWRDLFDSRVGRTVWP 432 P+ P G D Y RH++ L+ PG+Y L DS+ P Sbjct: 24 PYAPSNGKCKDNEYK----------------RHNLCCLSCPPGTYASRLCDSKTNTQCTP 67 Query: 433 YGSGVWSKKEFVLP 474 GSG ++ + LP Sbjct: 68 CGSGTFTSRNNHLP 81
>CRMB_CAMPM (P68636) Soluble TNF receptor II precursor (Cytokine| response-modifying protein B) Length = 349 Score = 33.1 bits (74), Expect = 0.62 Identities = 20/74 (27%), Positives = 29/74 (39%) Frame = +1 Query: 253 PFPPGPGSAADERYSLDEIVYRSSSGGLLDVRHDIAALARYPGSYWRDLFDSRVGRTVWP 432 P+ P G D Y RH++ L+ PG+Y L DS+ P Sbjct: 24 PYAPSNGKCKDNEYK----------------RHNLCCLSCPPGTYASRLCDSKTNTQCTP 67 Query: 433 YGSGVWSKKEFVLP 474 GSG ++ + LP Sbjct: 68 CGSGTFTSRNNHLP 81
>FADH_YEAST (P32771) S-(hydroxymethyl)glutathione dehydrogenase (EC 1.1.1.284)| (Glutathione-dependent formaldehyde dehydrogenase) (FDH) (FALDH) (Alcohol dehydrogenase SFA) (EC 1.1.1.1) Length = 386 Score = 32.7 bits (73), Expect = 0.81 Identities = 18/43 (41%), Positives = 22/43 (51%) Frame = -3 Query: 582 DPEVLHPGEVVAAEALGPEEVGVALEEGDDVVRVDPGEHELLL 454 DPE L P LG E G+ GDDV+ V PG+H + L Sbjct: 60 DPEGLFPC------VLGHEGAGIVESVGDDVITVKPGDHVIAL 96
>CRMB_VARV (P34015) Soluble TNF receptor II precursor (Cytokine| response-modifying protein B) Length = 349 Score = 32.0 bits (71), Expect = 1.4 Identities = 20/74 (27%), Positives = 29/74 (39%) Frame = +1 Query: 253 PFPPGPGSAADERYSLDEIVYRSSSGGLLDVRHDIAALARYPGSYWRDLFDSRVGRTVWP 432 P+ P G D Y RH++ L+ PG+Y L DS+ P Sbjct: 24 PYTPPNGKCKDTEYK----------------RHNLCCLSCPPGTYASRLCDSKTNTQCTP 67 Query: 433 YGSGVWSKKEFVLP 474 GSG ++ + LP Sbjct: 68 CGSGTFTSRNNHLP 81
>SI1L2_RAT (Q5JCS6) Signal-induced proliferation-associated 1-like protein 2| (Serine-rich synapse-associated protein) Length = 1722 Score = 31.2 bits (69), Expect = 2.4 Identities = 19/50 (38%), Positives = 31/50 (62%) Frame = -1 Query: 371 RARAAMSWRTSSRPPELERYTISSRE*RSSAADPGPGGKGSYQAEKSLAG 222 +A+AA+ R++S +L T SS +SS++DPGPGG G ++ + G Sbjct: 1099 QAQAAIP-RSTSFDRKLPDGTRSSPSNQSSSSDPGPGGSGPWRPQVGYDG 1147
>SI1L2_MOUSE (Q80TE4) Signal-induced proliferation-associated 1-like protein 2| Length = 1722 Score = 31.2 bits (69), Expect = 2.4 Identities = 19/50 (38%), Positives = 31/50 (62%) Frame = -1 Query: 371 RARAAMSWRTSSRPPELERYTISSRE*RSSAADPGPGGKGSYQAEKSLAG 222 +A+AA+ R++S +L T SS +SS++DPGPGG G ++ + G Sbjct: 1099 QAQAAIP-RSTSFDRKLPDGTRSSPSNQSSSSDPGPGGSGPWRPQVGYDG 1147
>SI1L2_HUMAN (Q9P2F8) Signal-induced proliferation-associated 1-like protein 2| Length = 1722 Score = 31.2 bits (69), Expect = 2.4 Identities = 19/50 (38%), Positives = 31/50 (62%) Frame = -1 Query: 371 RARAAMSWRTSSRPPELERYTISSRE*RSSAADPGPGGKGSYQAEKSLAG 222 +A+AA+ R++S +L T SS +SS++DPGPGG G ++ + G Sbjct: 1098 QAQAAIP-RSTSFDRKLPDGTRSSPSNQSSSSDPGPGGSGPWRPQVGYDG 1146
>MFRP_HUMAN (Q9BY79) Membrane frizzled-related protein (Membrane-type| frizzled-related protein) Length = 579 Score = 30.4 bits (67), Expect = 4.0 Identities = 10/26 (38%), Positives = 16/26 (61%) Frame = +1 Query: 235 FSAWYEPFPPGPGSAADERYSLDEIV 312 F AWY+ PG GS A + + D+++ Sbjct: 246 FHAWYQAMAPGRGSCAHDEFRCDQLI 271
>HPRK_MYCPU (Q98PL1) HPr kinase/phosphorylase (EC 2.7.11.-) (EC 2.7.4.-)| (HPrK/P) (HPr(Ser) kinase/phosphorylase) Length = 309 Score = 30.4 bits (67), Expect = 4.0 Identities = 16/55 (29%), Positives = 28/55 (50%) Frame = +1 Query: 409 RVGRTVWPYGSGVWSKKEFVLPGIHPDHIVSLFEGNSNLFWAERLGRDHLAGMKD 573 R+G V Y G W + +P + SL E ++N+F ++ G D LA +++ Sbjct: 249 RLGNKVLKYQIGEWKIPKIEIPIRQGRSVASLIEASANMFLSKLNGHDVLAMIQE 303 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 46,247,139 Number of Sequences: 219361 Number of extensions: 831231 Number of successful extensions: 3336 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 3230 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3332 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 5216272880 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
