ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart55c11 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_475849.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1566 Score = 527 bits (266), Expect = e-146 Identities = 386/426 (90%) Strand = Plus / Plus Query: 168 gcaccggcgcgcggcggacgaggacatccgggaggaggcggcgcggcaccgggccccggc 227 ||||||||||||||| |||||| |||||||||||||||||||| ||||||| |||||| Sbjct: 147 gcaccggcgcgcggccgacgagaacatccgggaggaggcggcgaggcaccgcgccccgaa 206 Query: 228 caacgacttctccgcctggtacgagcccttcccgccgggtcccgggtccgccgccgacga 287 | || |||||||||| ||||||| |||||||||||| | ||| || | ||||||| Sbjct: 207 ccacaacttctccgcgtggtacgcgcccttcccgcccgcccccaacggcgaccccgacga 266 Query: 288 gcgctactccctggacgagatcgtgtaccgctccagctcgggcggcctgctcgacgtgcg 347 |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| Sbjct: 267 gcgctactccctggacgagatcgtctaccgctccagctcgggcggcctcctcgacgtgcg 326 Query: 348 ccacgacattgcggccctggcgcgctacccggggtcctactggcgggacctcttcgactc 407 ||||||||| | || || || |||| |||||| ||||||||||| |||||||||||||| Sbjct: 327 ccacgacatggacgcgctcgcccgcttcccgggctcctactggcgcgacctcttcgactc 386 Query: 408 ccgcgtcggccgcaccgtctggccctacggctccggcgtctggtccaagaaggagttcgt 467 |||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| Sbjct: 387 ccgcgtcggccgcaccacctggcccttcggctccggcgtctggtccaagaaggagttcgt 446 Query: 468 gctccccgggatccacccggaccacatcgtctccctcttcgagggcaactccaacctctt 527 ||||||| |||| |||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 447 cctccccgagatcgaccccgaccacatcgtctccctcttcgagggcaactccaacctctt 506 Query: 528 ctgggccgagcgcctcggccgcgaccacctcgccgggatgaaggacctctgggtcaagca 587 |||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 507 ctgggcggagcgcctcggccgcgaccacctcgccgggatgaacgacctctgggtcaagca 566 Query: 588 ctgcgg 593 |||||| Sbjct: 567 ctgcgg 572
>gb|AC135925.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0560C03, complete sequence Length = 177861 Score = 527 bits (266), Expect = e-146 Identities = 386/426 (90%) Strand = Plus / Plus Query: 168 gcaccggcgcgcggcggacgaggacatccgggaggaggcggcgcggcaccgggccccggc 227 ||||||||||||||| |||||| |||||||||||||||||||| ||||||| |||||| Sbjct: 1874 gcaccggcgcgcggccgacgagaacatccgggaggaggcggcgaggcaccgcgccccgaa 1933 Query: 228 caacgacttctccgcctggtacgagcccttcccgccgggtcccgggtccgccgccgacga 287 | || |||||||||| ||||||| |||||||||||| | ||| || | ||||||| Sbjct: 1934 ccacaacttctccgcgtggtacgcgcccttcccgcccgcccccaacggcgaccccgacga 1993 Query: 288 gcgctactccctggacgagatcgtgtaccgctccagctcgggcggcctgctcgacgtgcg 347 |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| Sbjct: 1994 gcgctactccctggacgagatcgtctaccgctccagctcgggcggcctcctcgacgtgcg 2053 Query: 348 ccacgacattgcggccctggcgcgctacccggggtcctactggcgggacctcttcgactc 407 ||||||||| | || || || |||| |||||| ||||||||||| |||||||||||||| Sbjct: 2054 ccacgacatggacgcgctcgcccgcttcccgggctcctactggcgcgacctcttcgactc 2113 Query: 408 ccgcgtcggccgcaccgtctggccctacggctccggcgtctggtccaagaaggagttcgt 467 |||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| Sbjct: 2114 ccgcgtcggccgcaccacctggcccttcggctccggcgtctggtccaagaaggagttcgt 2173 Query: 468 gctccccgggatccacccggaccacatcgtctccctcttcgagggcaactccaacctctt 527 ||||||| |||| |||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 2174 cctccccgagatcgaccccgaccacatcgtctccctcttcgagggcaactccaacctctt 2233 Query: 528 ctgggccgagcgcctcggccgcgaccacctcgccgggatgaaggacctctgggtcaagca 587 |||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 2234 ctgggcggagcgcctcggccgcgaccacctcgccgggatgaacgacctctgggtcaagca 2293 Query: 588 ctgcgg 593 |||||| Sbjct: 2294 ctgcgg 2299 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 35 ccatggcggccaccacccacg 55 ||||||||||||||||||||| Sbjct: 1726 ccatggcggccaccacccacg 1746
>gb|AC130725.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0494H05, complete sequence Length = 141715 Score = 527 bits (266), Expect = e-146 Identities = 386/426 (90%) Strand = Plus / Plus Query: 168 gcaccggcgcgcggcggacgaggacatccgggaggaggcggcgcggcaccgggccccggc 227 ||||||||||||||| |||||| |||||||||||||||||||| ||||||| |||||| Sbjct: 77059 gcaccggcgcgcggccgacgagaacatccgggaggaggcggcgaggcaccgcgccccgaa 77118 Query: 228 caacgacttctccgcctggtacgagcccttcccgccgggtcccgggtccgccgccgacga 287 | || |||||||||| ||||||| |||||||||||| | ||| || | ||||||| Sbjct: 77119 ccacaacttctccgcgtggtacgcgcccttcccgcccgcccccaacggcgaccccgacga 77178 Query: 288 gcgctactccctggacgagatcgtgtaccgctccagctcgggcggcctgctcgacgtgcg 347 |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| Sbjct: 77179 gcgctactccctggacgagatcgtctaccgctccagctcgggcggcctcctcgacgtgcg 77238 Query: 348 ccacgacattgcggccctggcgcgctacccggggtcctactggcgggacctcttcgactc 407 ||||||||| | || || || |||| |||||| ||||||||||| |||||||||||||| Sbjct: 77239 ccacgacatggacgcgctcgcccgcttcccgggctcctactggcgcgacctcttcgactc 77298 Query: 408 ccgcgtcggccgcaccgtctggccctacggctccggcgtctggtccaagaaggagttcgt 467 |||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| Sbjct: 77299 ccgcgtcggccgcaccacctggcccttcggctccggcgtctggtccaagaaggagttcgt 77358 Query: 468 gctccccgggatccacccggaccacatcgtctccctcttcgagggcaactccaacctctt 527 ||||||| |||| |||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 77359 cctccccgagatcgaccccgaccacatcgtctccctcttcgagggcaactccaacctctt 77418 Query: 528 ctgggccgagcgcctcggccgcgaccacctcgccgggatgaaggacctctgggtcaagca 587 |||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 77419 ctgggcggagcgcctcggccgcgaccacctcgccgggatgaacgacctctgggtcaagca 77478 Query: 588 ctgcgg 593 |||||| Sbjct: 77479 ctgcgg 77484 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 35 ccatggcggccaccacccacg 55 ||||||||||||||||||||| Sbjct: 76911 ccatggcggccaccacccacg 76931
>gb|AC136492.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0554F08, complete sequence Length = 166218 Score = 527 bits (266), Expect = e-146 Identities = 386/426 (90%) Strand = Plus / Plus Query: 168 gcaccggcgcgcggcggacgaggacatccgggaggaggcggcgcggcaccgggccccggc 227 ||||||||||||||| |||||| |||||||||||||||||||| ||||||| |||||| Sbjct: 101562 gcaccggcgcgcggccgacgagaacatccgggaggaggcggcgaggcaccgcgccccgaa 101621 Query: 228 caacgacttctccgcctggtacgagcccttcccgccgggtcccgggtccgccgccgacga 287 | || |||||||||| ||||||| |||||||||||| | ||| || | ||||||| Sbjct: 101622 ccacaacttctccgcgtggtacgcgcccttcccgcccgcccccaacggcgaccccgacga 101681 Query: 288 gcgctactccctggacgagatcgtgtaccgctccagctcgggcggcctgctcgacgtgcg 347 |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| Sbjct: 101682 gcgctactccctggacgagatcgtctaccgctccagctcgggcggcctcctcgacgtgcg 101741 Query: 348 ccacgacattgcggccctggcgcgctacccggggtcctactggcgggacctcttcgactc 407 ||||||||| | || || || |||| |||||| ||||||||||| |||||||||||||| Sbjct: 101742 ccacgacatggacgcgctcgcccgcttcccgggctcctactggcgcgacctcttcgactc 101801 Query: 408 ccgcgtcggccgcaccgtctggccctacggctccggcgtctggtccaagaaggagttcgt 467 |||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| Sbjct: 101802 ccgcgtcggccgcaccacctggcccttcggctccggcgtctggtccaagaaggagttcgt 101861 Query: 468 gctccccgggatccacccggaccacatcgtctccctcttcgagggcaactccaacctctt 527 ||||||| |||| |||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 101862 cctccccgagatcgaccccgaccacatcgtctccctcttcgagggcaactccaacctctt 101921 Query: 528 ctgggccgagcgcctcggccgcgaccacctcgccgggatgaaggacctctgggtcaagca 587 |||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 101922 ctgggcggagcgcctcggccgcgaccacctcgccgggatgaacgacctctgggtcaagca 101981 Query: 588 ctgcgg 593 |||||| Sbjct: 101982 ctgcgg 101987 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 35 ccatggcggccaccacccacg 55 ||||||||||||||||||||| Sbjct: 101414 ccatggcggccaccacccacg 101434
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 527 bits (266), Expect = e-146 Identities = 386/426 (90%) Strand = Plus / Plus Query: 168 gcaccggcgcgcggcggacgaggacatccgggaggaggcggcgcggcaccgggccccggc 227 ||||||||||||||| |||||| |||||||||||||||||||| ||||||| |||||| Sbjct: 27070478 gcaccggcgcgcggccgacgagaacatccgggaggaggcggcgaggcaccgcgccccgaa 27070537 Query: 228 caacgacttctccgcctggtacgagcccttcccgccgggtcccgggtccgccgccgacga 287 | || |||||||||| ||||||| |||||||||||| | ||| || | ||||||| Sbjct: 27070538 ccacaacttctccgcgtggtacgcgcccttcccgcccgcccccaacggcgaccccgacga 27070597 Query: 288 gcgctactccctggacgagatcgtgtaccgctccagctcgggcggcctgctcgacgtgcg 347 |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| Sbjct: 27070598 gcgctactccctggacgagatcgtctaccgctccagctcgggcggcctcctcgacgtgcg 27070657 Query: 348 ccacgacattgcggccctggcgcgctacccggggtcctactggcgggacctcttcgactc 407 ||||||||| | || || || |||| |||||| ||||||||||| |||||||||||||| Sbjct: 27070658 ccacgacatggacgcgctcgcccgcttcccgggctcctactggcgcgacctcttcgactc 27070717 Query: 408 ccgcgtcggccgcaccgtctggccctacggctccggcgtctggtccaagaaggagttcgt 467 |||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| Sbjct: 27070718 ccgcgtcggccgcaccacctggcccttcggctccggcgtctggtccaagaaggagttcgt 27070777 Query: 468 gctccccgggatccacccggaccacatcgtctccctcttcgagggcaactccaacctctt 527 ||||||| |||| |||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 27070778 cctccccgagatcgaccccgaccacatcgtctccctcttcgagggcaactccaacctctt 27070837 Query: 528 ctgggccgagcgcctcggccgcgaccacctcgccgggatgaaggacctctgggtcaagca 587 |||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 27070838 ctgggcggagcgcctcggccgcgaccacctcgccgggatgaacgacctctgggtcaagca 27070897 Query: 588 ctgcgg 593 |||||| Sbjct: 27070898 ctgcgg 27070903 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 35 ccatggcggccaccacccacg 55 ||||||||||||||||||||| Sbjct: 27070330 ccatggcggccaccacccacg 27070350
>dbj|AK109478.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-F04, full insert sequence Length = 1876 Score = 519 bits (262), Expect = e-144 Identities = 385/426 (90%) Strand = Plus / Plus Query: 168 gcaccggcgcgcggcggacgaggacatccgggaggaggcggcgcggcaccgggccccggc 227 ||||||||||||||| |||||| |||||||||||||||||||| ||||||| |||||| Sbjct: 197 gcaccggcgcgcggccgacgagaacatccgggaggaggcggcgaggcaccgcgccccgaa 256 Query: 228 caacgacttctccgcctggtacgagcccttcccgccgggtcccgggtccgccgccgacga 287 | || || ||||||| ||||||| |||||||||||| | ||| || | ||||||| Sbjct: 257 ccacaacctctccgcgtggtacgcgcccttcccgcccgcccccaacggcgaccccgacga 316 Query: 288 gcgctactccctggacgagatcgtgtaccgctccagctcgggcggcctgctcgacgtgcg 347 |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| Sbjct: 317 gcgctactccctggacgagatcgtctaccgctccagctcgggcggcctcctcgacgtgcg 376 Query: 348 ccacgacattgcggccctggcgcgctacccggggtcctactggcgggacctcttcgactc 407 ||||||||| | || || || |||| |||||| ||||||||||| |||||||||||||| Sbjct: 377 ccacgacatggacgcgctcgcccgcttcccgggctcctactggcgcgacctcttcgactc 436 Query: 408 ccgcgtcggccgcaccgtctggccctacggctccggcgtctggtccaagaaggagttcgt 467 |||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| Sbjct: 437 ccgcgtcggccgcaccacctggcccttcggctccggcgtctggtccaagaaggagttcgt 496 Query: 468 gctccccgggatccacccggaccacatcgtctccctcttcgagggcaactccaacctctt 527 ||||||| |||| |||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 497 cctccccgagatcgaccccgaccacatcgtctccctcttcgagggcaactccaacctctt 556 Query: 528 ctgggccgagcgcctcggccgcgaccacctcgccgggatgaaggacctctgggtcaagca 587 |||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 557 ctgggcggagcgcctcggccgcgaccacctcgccgggatgaacgacctctgggtcaagca 616 Query: 588 ctgcgg 593 |||||| Sbjct: 617 ctgcgg 622 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 35 ccatggcggccaccacccacg 55 ||||||||||||||||||||| Sbjct: 49 ccatggcggccaccacccacg 69
>dbj|AK101669.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033058D04, full insert sequence Length = 1938 Score = 519 bits (262), Expect = e-144 Identities = 385/426 (90%) Strand = Plus / Plus Query: 168 gcaccggcgcgcggcggacgaggacatccgggaggaggcggcgcggcaccgggccccggc 227 ||||||||||||||| |||||| |||||||||||||||||||| ||||||| |||||| Sbjct: 246 gcaccggcgcgcggccgacgagaacatccgggaggaggcggcgaggcaccgcgccccgaa 305 Query: 228 caacgacttctccgcctggtacgagcccttcccgccgggtcccgggtccgccgccgacga 287 | || |||||||||| ||||||| |||||||||||| | ||| || | ||||||| Sbjct: 306 ccacaacttctccgcgtggtacgcgcccttcccgcccgcccccaacggcgaccccgacga 365 Query: 288 gcgctactccctggacgagatcgtgtaccgctccagctcgggcggcctgctcgacgtgcg 347 |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| Sbjct: 366 gcgctactccctggacgagatcgtctaccgctccagctcgggcggcctcctcgacgtgcg 425 Query: 348 ccacgacattgcggccctggcgcgctacccggggtcctactggcgggacctcttcgactc 407 ||||||||| | || || || |||| |||||| ||||||||||| |||||||||||||| Sbjct: 426 ccacgacatggacgcgctcgcccgcttcccgggctcctactggcgcgacctcttcgactc 485 Query: 408 ccgcgtcggccgcaccgtctggccctacggctccggcgtctggtccaagaaggagttcgt 467 |||||||||||||||| |||||||| |||||||||||||||||||||||| |||||||| Sbjct: 486 ccgcgtcggccgcaccacctggcccttcggctccggcgtctggtccaagaatgagttcgt 545 Query: 468 gctccccgggatccacccggaccacatcgtctccctcttcgagggcaactccaacctctt 527 ||||||| |||| |||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 546 cctccccgagatcgaccccgaccacatcgtctccctcttcgagggcaactccaacctctt 605 Query: 528 ctgggccgagcgcctcggccgcgaccacctcgccgggatgaaggacctctgggtcaagca 587 |||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 606 ctgggcggagcgcctcggccgcgaccacctcgccgggatgaacgacctctgggtcaagca 665 Query: 588 ctgcgg 593 |||||| Sbjct: 666 ctgcgg 671 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 35 ccatggcggccaccacccacg 55 ||||||||||||||||||||| Sbjct: 98 ccatggcggccaccacccacg 118
>gb|BT018440.1| Zea mays clone EL01N0372H09.d mRNA sequence Length = 1857 Score = 494 bits (249), Expect = e-136 Identities = 381/425 (89%) Strand = Plus / Plus Query: 166 aagcaccggcgcgcggcggacgaggacatccgggaggaggcggcgcggcaccgggccccg 225 |||||||| ||| | ||||| ||| ||||||| |||||||||||||||| ||| | |||| Sbjct: 188 aagcaccgccgcccagcggaggagaacatccgcgaggaggcggcgcggctccgaggcccg 247 Query: 226 gccaacgacttctccgcctggtacgagcccttcccgccgggtcccgggtccgccgccgac 285 ||| | | ||||| || |||||||||||||||||||||| ||||| || | | || Sbjct: 248 gcccagggtttctctgcgtggtacgagcccttcccgccggcgcccggcggcgacccgaac 307 Query: 286 gagcgctactccctggacgagatcgtgtaccgctccagctcgggcggcctgctcgacgtg 345 ||||||||||| ||||||||| |||| ||||||||||||||||| ||||| ||||||||| Sbjct: 308 gagcgctactcgctggacgaggtcgtctaccgctccagctcggggggcctcctcgacgtg 367 Query: 346 cgccacgacattgcggccctggcgcgctacccggggtcctactggcgggacctcttcgac 405 ||||||||||| | ||| ||||| ||||||||||||||||||||||| |||||||||||| Sbjct: 368 cgccacgacatggaggcgctggcccgctacccggggtcctactggcgtgacctcttcgac 427 Query: 406 tcccgcgtcggccgcaccgtctggccctacggctccggcgtctggtccaagaaggagttc 465 ||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| Sbjct: 428 tcccgcgtcggccgcaccgcctggccctacggctcgggcgtctggtccaagaaggagttc 487 Query: 466 gtgctccccgggatccacccggaccacatcgtctccctcttcgagggcaactccaacctc 525 |||||||||| |||| || | ||||||||||||||||||||||||||||||||||||||| Sbjct: 488 gtgctccccgagatcgactccgaccacatcgtctccctcttcgagggcaactccaacctc 547 Query: 526 ttctgggccgagcgcctcggccgcgaccacctcgccgggatgaaggacctctgggtcaag 585 |||||||| ||||||||||||||||| ||||||| ||||||||| ||||||||||||||| Sbjct: 548 ttctgggcggagcgcctcggccgcgagcacctcggcgggatgaacgacctctgggtcaag 607 Query: 586 cactg 590 ||||| Sbjct: 608 cactg 612
>gb|AY109760.1| Zea mays CL120_1 mRNA sequence Length = 1901 Score = 420 bits (212), Expect = e-114 Identities = 281/306 (91%) Strand = Plus / Plus Query: 285 cgagcgctactccctggacgagatcgtgtaccgctccagctcgggcggcctgctcgacgt 344 |||||||||||| ||||||||| |||| |||||||||||||| ||| |||||||| Sbjct: 340 cgagcgctactcgctggacgaggtcgtctaccgctccagctcnnnnnncctcctcgacgt 399 Query: 345 gcgccacgacattgcggccctggcgcgctacccggggtcctactggcgggacctcttcga 404 |||||||||||| | ||| ||||| ||||||||||||||||||||||| ||||||||||| Sbjct: 400 gcgccacgacatggaggcgctggcccgctacccggggtcctactggcgtgacctcttcga 459 Query: 405 ctcccgcgtcggccgcaccgtctggccctacggctccggcgtctggtccaagaaggagtt 464 |||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| Sbjct: 460 ctcccgcgtcggccgcaccgcctggccctacggctcgggcgtctggtccaagaaggagtt 519 Query: 465 cgtgctccccgggatccacccggaccacatcgtctccctcttcgagggcaactccaacct 524 ||||||||||| |||| || | |||||||||||||||||||||||||||||||||||||| Sbjct: 520 cgtgctccccgagatcgactccgaccacatcgtctccctcttcgagggcaactccaacct 579 Query: 525 cttctgggccgagcgcctcggccgcgaccacctcgccgggatgaaggacctctgggtcaa 584 ||||||||| ||||||||||||||||| ||||||| ||||||||| |||||||||||||| Sbjct: 580 cttctgggcggagcgcctcggccgcgagcacctcggcgggatgaacgacctctgggtcaa 639 Query: 585 gcactg 590 |||||| Sbjct: 640 gcactg 645 Score = 54.0 bits (27), Expect = 5e-04 Identities = 54/63 (85%) Strand = Plus / Plus Query: 166 aagcaccggcgcgcggcggacgaggacatccgggaggaggcggcgcggcaccgggccccg 225 |||||||| ||| | ||||| ||| ||||||| |||||||||||||||| ||| | |||| Sbjct: 221 aagcaccgccgcccagcggaggagaacatccgcgaggaggcggcgcggctccgaggcccg 280 Query: 226 gcc 228 ||| Sbjct: 281 gcc 283
>ref|NM_192166.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1578 Score = 387 bits (195), Expect = e-104 Identities = 371/427 (86%), Gaps = 2/427 (0%) Strand = Plus / Plus Query: 168 gcaccggcgcgcggcggacgaggacatccgggaggaggcggcgcggcaccg-ggccccgg 226 |||||| ||| | ||||| ||| |||||||||||||||| ||||||| ||| |||||||| Sbjct: 159 gcaccgccgccccgcggaggagaacatccgggaggaggccgcgcggctccgcggccccgg 218 Query: 227 ccaacgacttctccgcctggtacgagcccttcccgccgggtcccgggtccgccgccgacg 286 ||||||||||| || ||||||| ||| ||||| ||| |||| | || | |||||| Sbjct: 219 g-aacgacttctcggcgtggtacgtgccgttccccccgacgcccgaggacgaccccgacg 277 Query: 287 agcgctactccctggacgagatcgtgtaccgctccagctcgggcggcctgctcgacgtgc 346 |||||||||| ||||||||| | || |||||||||||||| || || || ||||||||| Sbjct: 278 agcgctactcgctggacgaggtggtctaccgctccagctccggggggctcctcgacgtgt 337 Query: 347 gccacgacattgcggccctggcgcgctacccggggtcctactggcgggacctcttcgact 406 |||||||||| | ||| || ||||||| |||||| ||||||||||| ||||||||||||| Sbjct: 338 gccacgacatggaggcgctcgcgcgcttcccgggctcctactggcgcgacctcttcgact 397 Query: 407 cccgcgtcggccgcaccgtctggccctacggctccggcgtctggtccaagaaggagttcg 466 ||||||| || ||||||| ||||||||||||||||| || ||||||||||||||||||| Sbjct: 398 cccgcgtggggcgcaccgcgtggccctacggctccggggtgtggtccaagaaggagttcg 457 Query: 467 tgctccccgggatccacccggaccacatcgtctccctcttcgagggcaactccaacctct 526 ||||||| | |||| || | |||||||||||||||||||||||||||||||||||||||| Sbjct: 458 tgctcccggagatcgactccgaccacatcgtctccctcttcgagggcaactccaacctct 517 Query: 527 tctgggccgagcgcctcggccgcgaccacctcgccgggatgaaggacctctgggtcaagc 586 ||||||| ||||||||||||||||| ||||||| |||||||| ||||||||||| |||| Sbjct: 518 tctgggcggagcgcctcggccgcgagcacctcggcgggatgaccgacctctgggttaagc 577 Query: 587 actgcgg 593 ||||||| Sbjct: 578 actgcgg 584
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 387 bits (195), Expect = e-104 Identities = 371/427 (86%), Gaps = 2/427 (0%) Strand = Plus / Minus Query: 168 gcaccggcgcgcggcggacgaggacatccgggaggaggcggcgcggcaccg-ggccccgg 226 |||||| ||| | ||||| ||| |||||||||||||||| ||||||| ||| |||||||| Sbjct: 28648976 gcaccgccgccccgcggaggagaacatccgggaggaggccgcgcggctccgcggccccgg 28648917 Query: 227 ccaacgacttctccgcctggtacgagcccttcccgccgggtcccgggtccgccgccgacg 286 ||||||||||| || ||||||| ||| ||||| ||| |||| | || | |||||| Sbjct: 28648916 g-aacgacttctcggcgtggtacgtgccgttccccccgacgcccgaggacgaccccgacg 28648858 Query: 287 agcgctactccctggacgagatcgtgtaccgctccagctcgggcggcctgctcgacgtgc 346 |||||||||| ||||||||| | || |||||||||||||| || || || ||||||||| Sbjct: 28648857 agcgctactcgctggacgaggtggtctaccgctccagctccggggggctcctcgacgtgt 28648798 Query: 347 gccacgacattgcggccctggcgcgctacccggggtcctactggcgggacctcttcgact 406 |||||||||| | ||| || ||||||| |||||| ||||||||||| ||||||||||||| Sbjct: 28648797 gccacgacatggaggcgctcgcgcgcttcccgggctcctactggcgcgacctcttcgact 28648738 Query: 407 cccgcgtcggccgcaccgtctggccctacggctccggcgtctggtccaagaaggagttcg 466 ||||||| || ||||||| ||||||||||||||||| || ||||||||||||||||||| Sbjct: 28648737 cccgcgtggggcgcaccgcgtggccctacggctccggggtgtggtccaagaaggagttcg 28648678 Query: 467 tgctccccgggatccacccggaccacatcgtctccctcttcgagggcaactccaacctct 526 ||||||| | |||| || | |||||||||||||||||||||||||||||||||||||||| Sbjct: 28648677 tgctcccggagatcgactccgaccacatcgtctccctcttcgagggcaactccaacctct 28648618 Query: 527 tctgggccgagcgcctcggccgcgaccacctcgccgggatgaaggacctctgggtcaagc 586 ||||||| ||||||||||||||||| ||||||| |||||||| ||||||||||| |||| Sbjct: 28648617 tctgggcggagcgcctcggccgcgagcacctcggcgggatgaccgacctctgggttaagc 28648558 Query: 587 actgcgg 593 ||||||| Sbjct: 28648557 actgcgg 28648551
>dbj|AP003248.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0431H09 Length = 166886 Score = 387 bits (195), Expect = e-104 Identities = 371/427 (86%), Gaps = 2/427 (0%) Strand = Plus / Minus Query: 168 gcaccggcgcgcggcggacgaggacatccgggaggaggcggcgcggcaccg-ggccccgg 226 |||||| ||| | ||||| ||| |||||||||||||||| ||||||| ||| |||||||| Sbjct: 32050 gcaccgccgccccgcggaggagaacatccgggaggaggccgcgcggctccgcggccccgg 31991 Query: 227 ccaacgacttctccgcctggtacgagcccttcccgccgggtcccgggtccgccgccgacg 286 ||||||||||| || ||||||| ||| ||||| ||| |||| | || | |||||| Sbjct: 31990 g-aacgacttctcggcgtggtacgtgccgttccccccgacgcccgaggacgaccccgacg 31932 Query: 287 agcgctactccctggacgagatcgtgtaccgctccagctcgggcggcctgctcgacgtgc 346 |||||||||| ||||||||| | || |||||||||||||| || || || ||||||||| Sbjct: 31931 agcgctactcgctggacgaggtggtctaccgctccagctccggggggctcctcgacgtgt 31872 Query: 347 gccacgacattgcggccctggcgcgctacccggggtcctactggcgggacctcttcgact 406 |||||||||| | ||| || ||||||| |||||| ||||||||||| ||||||||||||| Sbjct: 31871 gccacgacatggaggcgctcgcgcgcttcccgggctcctactggcgcgacctcttcgact 31812 Query: 407 cccgcgtcggccgcaccgtctggccctacggctccggcgtctggtccaagaaggagttcg 466 ||||||| || ||||||| ||||||||||||||||| || ||||||||||||||||||| Sbjct: 31811 cccgcgtggggcgcaccgcgtggccctacggctccggggtgtggtccaagaaggagttcg 31752 Query: 467 tgctccccgggatccacccggaccacatcgtctccctcttcgagggcaactccaacctct 526 ||||||| | |||| || | |||||||||||||||||||||||||||||||||||||||| Sbjct: 31751 tgctcccggagatcgactccgaccacatcgtctccctcttcgagggcaactccaacctct 31692 Query: 527 tctgggccgagcgcctcggccgcgaccacctcgccgggatgaaggacctctgggtcaagc 586 ||||||| ||||||||||||||||| ||||||| |||||||| ||||||||||| |||| Sbjct: 31691 tctgggcggagcgcctcggccgcgagcacctcggcgggatgaccgacctctgggttaagc 31632 Query: 587 actgcgg 593 ||||||| Sbjct: 31631 actgcgg 31625
>dbj|AK109336.2| Oryza sativa (japonica cultivar-group) cDNA clone:006-202-C12, full insert sequence Length = 1880 Score = 387 bits (195), Expect = e-104 Identities = 371/427 (86%), Gaps = 2/427 (0%) Strand = Plus / Plus Query: 168 gcaccggcgcgcggcggacgaggacatccgggaggaggcggcgcggcaccg-ggccccgg 226 |||||| ||| | ||||| ||| |||||||||||||||| ||||||| ||| |||||||| Sbjct: 214 gcaccgccgccccgcggaggagaacatccgggaggaggccgcgcggctccgcggccccgg 273 Query: 227 ccaacgacttctccgcctggtacgagcccttcccgccgggtcccgggtccgccgccgacg 286 ||||||||||| || ||||||| ||| ||||| ||| |||| | || | |||||| Sbjct: 274 g-aacgacttctcggcgtggtacgtgccgttccccccgacgcccgaggacgaccccgacg 332 Query: 287 agcgctactccctggacgagatcgtgtaccgctccagctcgggcggcctgctcgacgtgc 346 |||||||||| ||||||||| | || |||||||||||||| || || || ||||||||| Sbjct: 333 agcgctactcgctggacgaggtggtctaccgctccagctccggggggctcctcgacgtgt 392 Query: 347 gccacgacattgcggccctggcgcgctacccggggtcctactggcgggacctcttcgact 406 |||||||||| | ||| || ||||||| |||||| ||||||||||| ||||||||||||| Sbjct: 393 gccacgacatggaggcgctcgcgcgcttcccgggctcctactggcgcgacctcttcgact 452 Query: 407 cccgcgtcggccgcaccgtctggccctacggctccggcgtctggtccaagaaggagttcg 466 ||||||| || ||||||| ||||||||||||||||| || ||||||||||||||||||| Sbjct: 453 cccgcgtggggcgcaccgcgtggccctacggctccggggtgtggtccaagaaggagttcg 512 Query: 467 tgctccccgggatccacccggaccacatcgtctccctcttcgagggcaactccaacctct 526 ||||||| | |||| || | |||||||||||||||||||||||||||||||||||||||| Sbjct: 513 tgctcccggagatcgactccgaccacatcgtctccctcttcgagggcaactccaacctct 572 Query: 527 tctgggccgagcgcctcggccgcgaccacctcgccgggatgaaggacctctgggtcaagc 586 ||||||| ||||||||||||||||| ||||||| |||||||| ||||||||||| |||| Sbjct: 573 tctgggcggagcgcctcggccgcgagcacctcggcgggatgaccgacctctgggttaagc 632 Query: 587 actgcgg 593 ||||||| Sbjct: 633 actgcgg 639
>dbj|AK073138.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033024E01, full insert sequence Length = 1902 Score = 387 bits (195), Expect = e-104 Identities = 371/427 (86%), Gaps = 2/427 (0%) Strand = Plus / Plus Query: 168 gcaccggcgcgcggcggacgaggacatccgggaggaggcggcgcggcaccg-ggccccgg 226 |||||| ||| | ||||| ||| |||||||||||||||| ||||||| ||| |||||||| Sbjct: 231 gcaccgccgccccgcggaggagaacatccgggaggaggccgcgcggctccgcggccccgg 290 Query: 227 ccaacgacttctccgcctggtacgagcccttcccgccgggtcccgggtccgccgccgacg 286 ||||||||||| || ||||||| ||| ||||| ||| |||| | || | |||||| Sbjct: 291 g-aacgacttctcggcgtggtacgtgccgttccccccgacgcccgaggacgaccccgacg 349 Query: 287 agcgctactccctggacgagatcgtgtaccgctccagctcgggcggcctgctcgacgtgc 346 |||||||||| ||||||||| | || |||||||||||||| || || || ||||||||| Sbjct: 350 agcgctactcgctggacgaggtggtctaccgctccagctccggggggctcctcgacgtgt 409 Query: 347 gccacgacattgcggccctggcgcgctacccggggtcctactggcgggacctcttcgact 406 |||||||||| | ||| || ||||||| |||||| ||||||||||| ||||||||||||| Sbjct: 410 gccacgacatggaggcgctcgcgcgcttcccgggctcctactggcgcgacctcttcgact 469 Query: 407 cccgcgtcggccgcaccgtctggccctacggctccggcgtctggtccaagaaggagttcg 466 ||||||| || ||||||| ||||||||||||||||| || ||||||||||||||||||| Sbjct: 470 cccgcgtggggcgcaccgcgtggccctacggctccggggtgtggtccaagaaggagttcg 529 Query: 467 tgctccccgggatccacccggaccacatcgtctccctcttcgagggcaactccaacctct 526 ||||||| | |||| || | |||||||||||||||||||||||||||||||||||||||| Sbjct: 530 tgctcccggagatcgactccgaccacatcgtctccctcttcgagggcaactccaacctct 589 Query: 527 tctgggccgagcgcctcggccgcgaccacctcgccgggatgaaggacctctgggtcaagc 586 ||||||| ||||||||||||||||| ||||||| |||||||| ||||||||||| |||| Sbjct: 590 tctgggcggagcgcctcggccgcgagcacctcggcgggatgaccgacctctgggttaagc 649 Query: 587 actgcgg 593 ||||||| Sbjct: 650 actgcgg 656
>gb|AY112514.1| Zea mays CL891_1 mRNA sequence Length = 1846 Score = 208 bits (105), Expect = 2e-50 Identities = 189/219 (86%) Strand = Plus / Plus Query: 285 cgagcgctactccctggacgagatcgtgtaccgctccagctcgggcggcctgctcgacgt 344 ||||||||||||||||||||||||||||||||| |||||||| ||| |||||||| Sbjct: 303 cgagcgctactccctggacgagatcgtgtaccggtccagctcnnnnnncctcctcgacgt 362 Query: 345 gcgccacgacattgcggccctggcgcgctacccggggtcctactggcgggacctcttcga 404 ||| |||||||| | ||| ||| | |||| | |||| |||||||||| ||||||||||| Sbjct: 363 gcggcacgacatggaggcgctgtcccgcttctcgggcgcctactggcgcgacctcttcga 422 Query: 405 ctcccgcgtcggccgcaccgtctggccctacggctccggcgtctggtccaagaaggagtt 464 ||||||| |||| |||||| |||||| ||||| |||||||| ||||||||||||||||| Sbjct: 423 ctcccgcatcgggcgcaccacctggccgtacgggtccggcgtgtggtccaagaaggagtt 482 Query: 465 cgtgctccccgggatccacccggaccacatcgtctccct 503 ||||||||||| |||| | || ||||||||||||||||| Sbjct: 483 cgtgctccccgagatcgagcccgaccacatcgtctccct 521 Score = 81.8 bits (41), Expect = 2e-12 Identities = 59/65 (90%) Strand = Plus / Plus Query: 529 tgggccgagcgcctcggccgcgaccacctcgccgggatgaaggacctctgggtcaagcac 588 ||||||||||| ||||| ||||||||||||| ||||||||| ||||| ||||| |||||| Sbjct: 547 tgggccgagcggctcgggcgcgaccacctcggcgggatgaacgacctgtgggtgaagcac 606 Query: 589 tgcgg 593 ||||| Sbjct: 607 tgcgg 611 Score = 54.0 bits (27), Expect = 5e-04 Identities = 36/39 (92%) Strand = Plus / Plus Query: 159 caccaacaagcaccggcgcgcggcggacgaggacatccg 197 ||||| ||||||||||||||||||||| ||| ||||||| Sbjct: 177 caccaccaagcaccggcgcgcggcggatgagaacatccg 215
>gb|AY616089.1| Prototheca wickerhamii plastid threonine synthase mRNA, partial cds; nuclear gene for plastid product Length = 590 Score = 60.0 bits (30), Expect = 9e-06 Identities = 36/38 (94%) Strand = Plus / Plus Query: 426 ctggccctacggctccggcgtctggtccaagaaggagt 463 ||||||| |||||||||| ||||||||||||||||||| Sbjct: 347 ctggccccacggctccggtgtctggtccaagaaggagt 384
>emb|BX294152.1| Pirellula sp. strain 1 complete genome; segment 20/24 Length = 304250 Score = 46.1 bits (23), Expect = 0.13 Identities = 32/35 (91%) Strand = Plus / Minus Query: 505 ttcgagggcaactccaacctcttctgggccgagcg 539 |||||||| ||| | |||||||||||||||||||| Sbjct: 153097 ttcgagggaaacacgaacctcttctgggccgagcg 153063
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 44.1 bits (22), Expect = 0.52 Identities = 34/38 (89%) Strand = Plus / Minus Query: 426 ctggccctacggctccggcgtctggtccaagaaggagt 463 |||||| |||||||||||||| ||| ||||||||||| Sbjct: 1976075 ctggccgtacggctccggcgtgtggggcaagaaggagt 1976038 Score = 42.1 bits (21), Expect = 2.0 Identities = 27/29 (93%) Strand = Plus / Minus Query: 167 agcaccggcgcgcggcggacgaggacatc 195 ||||||||||||||| |||||||| |||| Sbjct: 3099165 agcaccggcgcgcggtggacgaggccatc 3099137 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 545 gccgcgaccacctcgccggg 564 |||||||||||||||||||| Sbjct: 4286297 gccgcgaccacctcgccggg 4286278 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 21 cgccgccagctccaccatgg 40 |||||||||||||||||||| Sbjct: 1713943 cgccgccagctccaccatgg 1713924 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 198 ggaggaggcggcgcggcaccgggc 221 ||||||||||||||||| |||||| Sbjct: 1183046 ggaggaggcggcgcggctccgggc 1183023 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 26 ccagctccaccatggcggcc 45 |||||||||||||||||||| Sbjct: 285356 ccagctccaccatggcggcc 285375
>ref|XM_536924.2| PREDICTED: Canis familiaris similar to Tu translation elongation factor, mitochondrial (LOC479796), mRNA Length = 1941 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 32 ccaccatggcggccaccaccc 52 ||||||||||||||||||||| Sbjct: 389 ccaccatggcggccaccaccc 409
>gb|AC104052.9| Homo sapiens chromosome 8, clone CTD-2358M3, complete sequence Length = 90940 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1 atcccacttcccccaatcccc 21 ||||||||||||||||||||| Sbjct: 9243 atcccacttcccccaatcccc 9263
>gb|AC055869.13| Homo sapiens chromosome 8, clone RP11-403C10, complete sequence Length = 182023 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1 atcccacttcccccaatcccc 21 ||||||||||||||||||||| Sbjct: 7934 atcccacttcccccaatcccc 7914
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 530 gggccgagcgcctcggccgcg 550 ||||||||||||||||||||| Sbjct: 5829858 gggccgagcgcctcggccgcg 5829838
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 207 ggcgcggcaccgggccccggc 227 ||||||||||||||||||||| Sbjct: 444267 ggcgcggcaccgggccccggc 444287
>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome Length = 4109442 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 537 gcgcctcggccgcgaccacctcgc 560 ||||||||||||||| |||||||| Sbjct: 3060192 gcgcctcggccgcgatcacctcgc 3060169
>ref|XM_468246.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1797 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 172 cggcgcgcggcggacgagga 191 |||||||||||||||||||| Sbjct: 72 cggcgcgcggcggacgagga 53
>ref|NM_002428.2| Homo sapiens matrix metallopeptidase 15 (membrane-inserted) (MMP15), mRNA Length = 4456 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 195 ccgggaggaggcggcgcggc 214 |||||||||||||||||||| Sbjct: 1033 ccgggaggaggcggcgcggc 1052
>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome Length = 3188609 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 553 cacctcgccgggatgaagga 572 |||||||||||||||||||| Sbjct: 280233 cacctcgccgggatgaagga 280214
>ref|XM_360580.1| Magnaporthe grisea 70-15 hypothetical protein (MG03123.4) partial mRNA Length = 2229 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 20 ccgccgccagctccaccatg 39 |||||||||||||||||||| Sbjct: 991 ccgccgccagctccaccatg 972
>gb|BC055428.1| Homo sapiens matrix metallopeptidase 15 (membrane-inserted), mRNA (cDNA clone MGC:51077 IMAGE:4811572), complete cds Length = 4263 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 195 ccgggaggaggcggcgcggc 214 |||||||||||||||||||| Sbjct: 846 ccgggaggaggcggcgcggc 865
>gb|BC036495.1| Homo sapiens matrix metallopeptidase 15 (membrane-inserted), mRNA (cDNA clone MGC:43196 IMAGE:5263145), complete cds Length = 4268 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 195 ccgggaggaggcggcgcggc 214 |||||||||||||||||||| Sbjct: 851 ccgggaggaggcggcgcggc 870
>emb|Z72521.1|HSN29F4 Human DNA sequence from clone LL22NC03-29F4 on chromosome 22, complete sequence Length = 19912 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 521 acctcttctgggccgagcgc 540 |||||||||||||||||||| Sbjct: 16911 acctcttctgggccgagcgc 16930
>emb|Z48482.1|HSMMPM2 H.sapiens mRNA for membrane-type matrix metalloproteinase 2 Length = 3530 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 195 ccgggaggaggcggcgcggc 214 |||||||||||||||||||| Sbjct: 108 ccgggaggaggcggcgcggc 127
>emb|CR749722.1| Homo sapiens mRNA; cDNA DKFZp434N071 (from clone DKFZp434N071) Length = 5009 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 198 ggaggaggcggcgcggcaccgggc 221 |||||||||||||||||| ||||| Sbjct: 619 ggaggaggcggcgcggcagcgggc 642
>gb|BC033015.2| Homo sapiens RAS p21 protein activator (GTPase activating protein) 1, transcript variant 1, mRNA (cDNA clone MGC:26760 IMAGE:4829173), complete cds Length = 4405 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 198 ggaggaggcggcgcggcaccgggc 221 |||||||||||||||||| ||||| Sbjct: 242 ggaggaggcggcgcggcagcgggc 265
>emb|AL583922.1|MLEPRTN6 Mycobacterium leprae strain TN complete genome; segment 6/10 Length = 318200 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 230 acgacttctccgcctggtac 249 |||||||||||||||||||| Sbjct: 196479 acgacttctccgcctggtac 196498
>emb|AL035472.1|MLCB596 Mycobacterium leprae cosmid B596 Length = 38426 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 230 acgacttctccgcctggtac 249 |||||||||||||||||||| Sbjct: 19297 acgacttctccgcctggtac 19278
>emb|AL929349.10| Zebrafish DNA sequence from clone CH211-207D24 in linkage group 20 Contains eight CpG islands, complete sequence Length = 196371 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 23 ccgccagctccaccatggcggcca 46 ||||||||||||||| |||||||| Sbjct: 92792 ccgccagctccaccaaggcggcca 92815
>emb|CR858268.1| Pongo pygmaeus mRNA; cDNA DKFZp469B2218 (from clone DKFZp469B2218) Length = 4648 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 198 ggaggaggcggcgcggcaccgggc 221 |||||||||||||||||| ||||| Sbjct: 501 ggaggaggcggcgcggcagcgggc 524
>gb|AC012182.7| Homo sapiens chromosome 16 clone RP11-332G1, complete sequence Length = 188926 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 195 ccgggaggaggcggcgcggc 214 |||||||||||||||||||| Sbjct: 101619 ccgggaggaggcggcgcggc 101638
>gb|AC126776.2| Homo sapiens chromosome 5 clone RP11-752D4, complete sequence Length = 34335 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 198 ggaggaggcggcgcggcaccgggc 221 |||||||||||||||||| ||||| Sbjct: 15828 ggaggaggcggcgcggcagcgggc 15851
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 531 ggccgagcgcctcggccgcg 550 |||||||||||||||||||| Sbjct: 4677218 ggccgagcgcctcggccgcg 4677199
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 540 cctcggccgcgaccacctcgccgg 563 ||||||||| |||||||||||||| Sbjct: 727132 cctcggccgagaccacctcgccgg 727155
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 23 ccgccagctccaccatggcg 42 |||||||||||||||||||| Sbjct: 492165 ccgccagctccaccatggcg 492184
>gb|AC155321.2| Pan troglodytes BAC clone CH251-489N11 from chromosome unknown, complete sequence Length = 202104 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 521 acctcttctgggccgagcgc 540 |||||||||||||||||||| Sbjct: 93622 acctcttctgggccgagcgc 93603
>gb|AF317732.1|AF317732 Chlamydomonas reinhardtii CIA5 gene, complete cds Length = 6481 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 195 ccgggaggaggcggcgcggc 214 |||||||||||||||||||| Sbjct: 2383 ccgggaggaggcggcgcggc 2402
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 172 cggcgcgcggcggacgagga 191 |||||||||||||||||||| Sbjct: 33801111 cggcgcgcggcggacgagga 33801130
>gb|AF212163.1|AF212163 Rhodobacter sphaeroides PduO (pduO), electron transfer flavoprotein B subunit (etfB), electron transfer flavoprotein subunit A (etfA), and S(+)-beta-hydroxybutyryl CoA dehydrogenase (hbdA) genes, complete cds; and unknown gene Length = 5654 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 553 cacctcgccgggatgaagga 572 |||||||||||||||||||| Sbjct: 2911 cacctcgccgggatgaagga 2930
>gb|AY943294.1| Hordeum vulgare subsp. vulgare clone BAC 673I14, complete sequence Length = 108608 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 452 ccaagaaggagttcgtgctc 471 |||||||||||||||||||| Sbjct: 80769 ccaagaaggagttcgtgctc 80788
>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome Length = 4659019 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 534 cgagcgcctcggccgcgacc 553 |||||||||||||||||||| Sbjct: 883858 cgagcgcctcggccgcgacc 883839
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 540 cctcggccgcgaccacctcgccgg 563 ||||||||| |||||||||||||| Sbjct: 5291920 cctcggccgtgaccacctcgccgg 5291897
>dbj|AP005115.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0700F06 Length = 139277 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 172 cggcgcgcggcggacgagga 191 |||||||||||||||||||| Sbjct: 131978 cggcgcgcggcggacgagga 131997
>dbj|AP004094.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1695_H09 Length = 114721 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 172 cggcgcgcggcggacgagga 191 |||||||||||||||||||| Sbjct: 17689 cggcgcgcggcggacgagga 17708
>dbj|AK119875.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-179-E10, full insert sequence Length = 3440 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 321 cagctcgggcggcctgctcgacgt 344 |||||||||||| ||||||||||| Sbjct: 571 cagctcgggcgggctgctcgacgt 548
>ref|NM_002890.1| Homo sapiens RAS p21 protein activator (GTPase activating protein) 1 (RASA1), transcript variant 1, mRNA Length = 4307 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 198 ggaggaggcggcgcggcaccgggc 221 |||||||||||||||||| ||||| Sbjct: 173 ggaggaggcggcgcggcagcgggc 196
>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome Length = 3551823 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 344 tgcgccacgacattgcggcc 363 |||||||||||||||||||| Sbjct: 3376759 tgcgccacgacattgcggcc 3376740
>gb|DQ275353.1| Glycine max threonine synthase gene, complete cds Length = 3166 Score = 40.1 bits (20), Expect = 8.1 Identities = 44/52 (84%) Strand = Plus / Plus Query: 482 acccggaccacatcgtctccctcttcgagggcaactccaacctcttctgggc 533 |||| ||| ||||||| ||| |||||| |||||||| || ||||||||||| Sbjct: 1064 accctgacgacatcgtttccgccttcgaaggcaactcgaatctcttctgggc 1115
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 195 ccgggaggaggcggcgcggcaccg 218 |||||||||||||||||| ||||| Sbjct: 2984048 ccgggaggaggcggcgcgccaccg 2984025
>dbj|AB209106.1| Homo sapiens mRNA for RAS p21 protein activator 1 isoform 1 variant protein Length = 3388 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 198 ggaggaggcggcgcggcaccgggc 221 |||||||||||||||||| ||||| Sbjct: 254 ggaggaggcggcgcggcagcgggc 277
>gb|M23379.1|HUMGAPA Human GTPase-activating protein ras p21 (RASA) mRNA, complete cds Length = 4307 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 198 ggaggaggcggcgcggcaccgggc 221 |||||||||||||||||| ||||| Sbjct: 173 ggaggaggcggcgcggcagcgggc 196
>dbj|AB052696.1| Chlamydomonas reinhardtii mRNA for CCM1-B, complete cds Length = 5125 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 195 ccgggaggaggcggcgcggc 214 |||||||||||||||||||| Sbjct: 1833 ccgggaggaggcggcgcggc 1852
>dbj|AB052695.1| Chlamydomonas reinhardtii mRNA for CCM1-A, complete cds Length = 5128 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 195 ccgggaggaggcggcgcggc 214 |||||||||||||||||||| Sbjct: 1836 ccgggaggaggcggcgcggc 1855
>dbj|AB052694.1| Chlamydomonas reinhardtii gene for CCM1-A, CCM1-B, complete cds Length = 8474 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 195 ccgggaggaggcggcgcggc 214 |||||||||||||||||||| Sbjct: 2895 ccgggaggaggcggcgcggc 2914 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,972,880 Number of Sequences: 3902068 Number of extensions: 2972880 Number of successful extensions: 84277 Number of sequences better than 10.0: 62 Number of HSP's better than 10.0 without gapping: 62 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 81747 Number of HSP's gapped (non-prelim): 2530 length of query: 593 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 570 effective length of database: 17,143,297,704 effective search space: 9771679691280 effective search space used: 9771679691280 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
