ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart55b10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1GATA1_HUMAN (P15976) Erythroid transcription factor (GATA-bindin... 30 5.3
2ATX2_MOUSE (O70305) Ataxin-2 (Spinocerebellar ataxia type 2 prot... 30 6.9
3IGHA1_GORGO (P20758) Ig alpha-1 chain C region 29 9.0

>GATA1_HUMAN (P15976) Erythroid transcription factor (GATA-binding factor 1)|
           (GATA-1) (Eryf1) (GF-1) (NF-E1 DNA-binding protein)
          Length = 413

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 27/92 (29%), Positives = 33/92 (35%), Gaps = 11/92 (11%)
 Frame = +1

Query: 79  FFGXXXXXXXXXASSTYGGYDAYPSAADAYFQDGERLYRHA-----------RRRAPAWS 225
           FF          ASST        +AA AY++D E  YRH+               P  S
Sbjct: 33  FFPSGPEGLDAAASSTAPSTATAAAAALAYYRDAEA-YRHSPVFQVYPLLNCMEGIPGGS 91

Query: 226 DYASYFPGVHATQPAARKSTTPRPSPPACGPD 321
            YA +  G     PA+    T   SPP    D
Sbjct: 92  PYAGWAYGKTGLYPASTVCPTREDSPPQAVED 123



to top

>ATX2_MOUSE (O70305) Ataxin-2 (Spinocerebellar ataxia type 2 protein homolog)|
          Length = 1285

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 23/79 (29%), Positives = 33/79 (41%), Gaps = 22/79 (27%)
 Frame = +1

Query: 148 PSAADAYFQDGERLYRHARRR------------------APAWSDYASYFPGVHATQPAA 273
           P A+D +  +G    R   RR                  APA +   +  PGV A+ P +
Sbjct: 66  PCASDCFGSNGHGASRPGSRRLLGVCGPPRPFVVVLLALAPAATPARACPPGVRASPPRS 125

Query: 274 RKSTTPRPSP----PACGP 318
             S++ RP+P    PAC P
Sbjct: 126 GVSSSARPAPGCPRPACEP 144



to top

>IGHA1_GORGO (P20758) Ig alpha-1 chain C region|
          Length = 353

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = +1

Query: 250 VHATQPAARKSTTPRPSPPACGP 318
           V +T P    ST P PSPP C P
Sbjct: 103 VPSTPPTPSPSTPPTPSPPCCHP 125


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.315    0.132    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,088,069
Number of Sequences: 219361
Number of extensions: 631084
Number of successful extensions: 2373
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2256
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2365
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5196311029
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
to top