ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart55b06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ACCO3_LYCES (P10967) 1-aminocyclopropane-1-carboxylate oxidase h... 82 1e-15
2DV4H_CATRO (O04847) Desacetoxyvindoline 4-hydroxylase (EC 1.14.1... 60 4e-09
3RF1_METTH (O26964) Peptide chain release factor subunit 1 (Trans... 33 0.34
4FLS_MATIN (O04395) Flavonol synthase/flavanone 3-hydroxylase (EC... 33 0.59
5RF1_METMP (P61731) Peptide chain release factor subunit 1 (Trans... 32 0.77
6FLS1_ARATH (Q96330) Flavonol synthase/flavanone 3-hydroxylase (E... 32 1.0
7ACCO_MUSAC (Q9FR99) 1-aminocyclopropane-1-carboxylate oxidase (E... 32 1.3
8CORO7_HUMAN (P57737) Coronin-7 (70 kDa WD repeat tumor rejection... 31 2.2
9ZBTB4_HUMAN (Q9P1Z0) Zinc finger and BTB domain-containing prote... 30 2.9
10FLS_EUSGR (Q9M547) Flavonol synthase/flavanone 3-hydroxylase (EC... 30 3.8
11TRKG_ECOLI (P23849) Trk system potassium uptake protein trkG 30 5.0
12RF1_METJA (Q58239) Peptide chain release factor subunit 1 (Trans... 30 5.0
13YJ53_YEAST (P47129) Hypothetical 35.5 kDa protein in MIR1-STE18 ... 30 5.0
14ATPBM_HEVBR (P29685) ATP synthase beta chain, mitochondrial prec... 29 6.5
15TMC2_HUMAN (Q8TDI7) Transmembrane cochlear-expressed protein 2 29 8.5

>ACCO3_LYCES (P10967) 1-aminocyclopropane-1-carboxylate oxidase homolog (Protein|
           E8)
          Length = 363

 Score = 81.6 bits (200), Expect = 1e-15
 Identities = 55/164 (33%), Positives = 76/164 (46%), Gaps = 7/164 (4%)
 Frame = +3

Query: 39  AYDRTADLRALDATFAGVSGLVASGLTHVPRIFRVPEGHHDKQDTT-----VLAVAGRQQ 203
           +YD+ ++L+A D T AGV GLV SG+T VP+IF +P     K+  T     V+ + G  +
Sbjct: 9   SYDKMSELKAFDDTKAGVKGLVDSGITKVPQIFVLPPKDRAKKCETHFVFPVIDLQGIDE 68

Query: 204 EPAGAIPVIDLGCSDXXXXXXXXXXXXXGCGFFQVTGHGVPEXXXXXXXXXXXXFHGADG 383
           +P     ++D                    GFFQV  HG+P             F   D 
Sbjct: 69  DPIKHKEIVD-----------KVRDASEKWGFFQVVNHGIPTSVLDRTLQGTRQFFEQD- 116

Query: 384 GEGTEKARLYSRDPVKPVKYQCNFDLYES--PVANWRDTLHVRM 509
                K + Y+RD  K V Y  N DLY+S  P A+WRDT+   M
Sbjct: 117 --NEVKKQYYTRDTAKKVVYTSNLDLYKSSVPAASWRDTIFCYM 158



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>DV4H_CATRO (O04847) Desacetoxyvindoline 4-hydroxylase (EC 1.14.11.20)|
          Length = 401

 Score = 59.7 bits (143), Expect = 4e-09
 Identities = 48/157 (30%), Positives = 65/157 (41%), Gaps = 6/157 (3%)
 Frame = +3

Query: 57  DLRALDATFAGVSGLVASGLTHVPRIFRVPEGHHDKQDTTVLAVAGRQQEPAGAIPVIDL 236
           +L+A D T AGV G+V +G+T +PRIF     + D+    +    G+       IPVI+L
Sbjct: 44  ELKAFDETKAGVKGIVDTGITKIPRIFIDQPKNLDR----ISVCRGKSDI---KIPVINL 96

Query: 237 GCSDXXXXXXXXXXXXXG-----CGFFQVTGHGVPEXXXXXXXXXXXXFHGADGGEGTEK 401
                            G      GFFQ+  HG+P+            FH  D      K
Sbjct: 97  NGLSSNSEIRREIVEKIGEASEKYGFFQIVNHGIPQDVMDKMVDGVRKFHEQD---DQIK 153

Query: 402 ARLYSRDPV-KPVKYQCNFDLYESPVANWRDTLHVRM 509
            + YSRD   K   Y  N+ L      NWRDT+   M
Sbjct: 154 RQYYSRDRFNKNFLYSSNYVLIPGIACNWRDTMECIM 190



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>RF1_METTH (O26964) Peptide chain release factor subunit 1 (Translation|
           termination factor aRF1)
          Length = 407

 Score = 33.5 bits (75), Expect = 0.34
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
 Frame = +3

Query: 381 GGEGTEKARLYSRDPVKPVK---YQCNFDLYESPV 476
           GG GTEK   Y  +P +P+K   Y CN + Y  P+
Sbjct: 98  GGPGTEKMETYVFEPPEPIKTYIYHCNSEFYLEPL 132



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>FLS_MATIN (O04395) Flavonol synthase/flavanone 3-hydroxylase (EC 1.14.11.23)|
           (EC 1.14.11.9) (FLS) (Fragment)
          Length = 291

 Score = 32.7 bits (73), Expect = 0.59
 Identities = 13/36 (36%), Positives = 16/36 (44%)
 Frame = +3

Query: 219 IPVIDLGCSDXXXXXXXXXXXXXGCGFFQVTGHGVP 326
           +PV+DL C D               G FQV  HG+P
Sbjct: 2   VPVVDLSCPDEELVARTVVKASEDWGVFQVVNHGIP 37



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>RF1_METMP (P61731) Peptide chain release factor subunit 1 (Translation|
           termination factor aRF1)
          Length = 419

 Score = 32.3 bits (72), Expect = 0.77
 Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
 Frame = +3

Query: 381 GGEGTEKARLYSRDPVKPVK---YQCNFDLYESPVANW 485
           GG GTEK  +Y  +P +PVK   Y+C+   Y  P+ ++
Sbjct: 98  GGPGTEKMEVYVLEPPEPVKTFVYRCDSLFYTDPLEDF 135



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>FLS1_ARATH (Q96330) Flavonol synthase/flavanone 3-hydroxylase (EC 1.14.11.23)|
           (EC 1.14.11.9) (FLS 1)
          Length = 336

 Score = 32.0 bits (71), Expect = 1.0
 Identities = 15/40 (37%), Positives = 17/40 (42%)
 Frame = +3

Query: 207 PAGAIPVIDLGCSDXXXXXXXXXXXXXGCGFFQVTGHGVP 326
           P  AIPV+DL   D               G FQV  HG+P
Sbjct: 39  PTPAIPVVDLSDPDEESVRRAVVKASEEWGLFQVVNHGIP 78



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>ACCO_MUSAC (Q9FR99) 1-aminocyclopropane-1-carboxylate oxidase (EC 1.14.17.4)|
           (ACC oxidase) (Ethylene-forming enzyme) (EFE)
          Length = 306

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 16/40 (40%), Positives = 18/40 (45%), Gaps = 3/40 (7%)
 Frame = +3

Query: 216 AIPVIDLGCSDXXXXXXXXXXXXXGC---GFFQVTGHGVP 326
           AIPVID    D             GC   GFFQ+  HG+P
Sbjct: 2   AIPVIDFSKLDGKERAETMARIANGCEEWGFFQLVNHGIP 41



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>CORO7_HUMAN (P57737) Coronin-7 (70 kDa WD repeat tumor rejection antigen|
           homolog)
          Length = 925

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 14/29 (48%), Positives = 19/29 (65%)
 Frame = +1

Query: 169 TPPSSQSQAANKNQLGPSR*STSGAATAP 255
           +PPSS +  +  + LGPS  STSG  T+P
Sbjct: 430 SPPSSLTSPSTPSSLGPSLSSTSGIGTSP 458



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>ZBTB4_HUMAN (Q9P1Z0) Zinc finger and BTB domain-containing protein 4|
           (KAISO-like zinc finger protein 1) (KAISO-L1)
          Length = 1013

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 15/44 (34%), Positives = 26/44 (59%)
 Frame = +1

Query: 151 ATTTNRTPPSSQSQAANKNQLGPSR*STSGAATAPPWLPPSAWP 282
           ATTT  +  SS S +++ +    S  S+S +++ PP  PP++ P
Sbjct: 79  ATTTAASSSSSSSSSSSSSSSSASSSSSSSSSSPPPASPPASSP 122



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>FLS_EUSGR (Q9M547) Flavonol synthase/flavanone 3-hydroxylase (EC 1.14.11.23)|
           (EC 1.14.11.9) (FLS)
          Length = 334

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 14/36 (38%), Positives = 16/36 (44%)
 Frame = +3

Query: 219 IPVIDLGCSDXXXXXXXXXXXXXGCGFFQVTGHGVP 326
           +PVIDL  SD               G FQV  HG+P
Sbjct: 43  VPVIDLSDSDEKKIVGLVSEASKEWGIFQVVNHGIP 78



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>TRKG_ECOLI (P23849) Trk system potassium uptake protein trkG|
          Length = 485

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +3

Query: 33  PVAYDRTADLRALDATFAGVSGLVASGLTHVPRIFRVPEGH 155
           P+  D   +L  +DA F GVSG+  +G T +  +  +P  +
Sbjct: 90  PLWIDSELNLTFIDALFEGVSGITTTGATVIDDVSSLPRAY 130



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>RF1_METJA (Q58239) Peptide chain release factor subunit 1 (Translation|
           termination factor aRF1)
          Length = 421

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
 Frame = +3

Query: 384 GEGTEKARLYSRDPVKPVK---YQCNFDLYESPV 476
           G GTEK   Y  +P +P+K   Y+C+ + Y  P+
Sbjct: 99  GPGTEKMETYVIEPPEPIKTYIYRCDSEFYLEPL 132



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>YJ53_YEAST (P47129) Hypothetical 35.5 kDa protein in MIR1-STE18 intergenic|
           region
          Length = 309

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +1

Query: 154 TTTNRTPPSSQSQAANKNQLGPSR*STSGAATAPPWLPP 270
           T  NR P    +++     + PSR S S   + PP LPP
Sbjct: 184 TLPNRKPNPPPNRSQRMQNIAPSRSSESTPTSGPPLLPP 222



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>ATPBM_HEVBR (P29685) ATP synthase beta chain, mitochondrial precursor (EC|
           3.6.3.14)
          Length = 562

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 8/58 (13%)
 Frame = +1

Query: 148 KATTTNRTPPSSQSQAANKNQLGP--------SR*STSGAATAPPWLPPSAWPRQGAG 297
           K+  +N  P  S S  ++K++  P        +  +TS AA APP  PP A P  G G
Sbjct: 21  KSPISNINPKLSSSSPSSKSRASPYGYLLTRAAEYATSAAAAAPP-QPPPAKPEGGKG 77



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>TMC2_HUMAN (Q8TDI7) Transmembrane cochlear-expressed protein 2|
          Length = 906

 Score = 28.9 bits (63), Expect = 8.5
 Identities = 22/55 (40%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
 Frame = +1

Query: 145 LKATTTNRTPPS-SQSQAANKNQLGPSR*STSGAATAPP--WLPPSAWPRQGAGS 300
           L+ T    TPPS SQSQA +K   GP   +++   T P    LP S  P  G  S
Sbjct: 829 LQLTKEETTPPSASQSQAMDKKAQGPGTSNSASRTTLPASGHLPISRPPGIGPDS 883


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.315    0.126    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,802,528
Number of Sequences: 219361
Number of extensions: 987935
Number of successful extensions: 3286
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 3152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3274
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3754426130
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
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