Clone Name | bart55b06 |
---|---|
Clone Library Name | barley_pub |
>ACCO3_LYCES (P10967) 1-aminocyclopropane-1-carboxylate oxidase homolog (Protein| E8) Length = 363 Score = 81.6 bits (200), Expect = 1e-15 Identities = 55/164 (33%), Positives = 76/164 (46%), Gaps = 7/164 (4%) Frame = +3 Query: 39 AYDRTADLRALDATFAGVSGLVASGLTHVPRIFRVPEGHHDKQDTT-----VLAVAGRQQ 203 +YD+ ++L+A D T AGV GLV SG+T VP+IF +P K+ T V+ + G + Sbjct: 9 SYDKMSELKAFDDTKAGVKGLVDSGITKVPQIFVLPPKDRAKKCETHFVFPVIDLQGIDE 68 Query: 204 EPAGAIPVIDLGCSDXXXXXXXXXXXXXGCGFFQVTGHGVPEXXXXXXXXXXXXFHGADG 383 +P ++D GFFQV HG+P F D Sbjct: 69 DPIKHKEIVD-----------KVRDASEKWGFFQVVNHGIPTSVLDRTLQGTRQFFEQD- 116 Query: 384 GEGTEKARLYSRDPVKPVKYQCNFDLYES--PVANWRDTLHVRM 509 K + Y+RD K V Y N DLY+S P A+WRDT+ M Sbjct: 117 --NEVKKQYYTRDTAKKVVYTSNLDLYKSSVPAASWRDTIFCYM 158
>DV4H_CATRO (O04847) Desacetoxyvindoline 4-hydroxylase (EC 1.14.11.20)| Length = 401 Score = 59.7 bits (143), Expect = 4e-09 Identities = 48/157 (30%), Positives = 65/157 (41%), Gaps = 6/157 (3%) Frame = +3 Query: 57 DLRALDATFAGVSGLVASGLTHVPRIFRVPEGHHDKQDTTVLAVAGRQQEPAGAIPVIDL 236 +L+A D T AGV G+V +G+T +PRIF + D+ + G+ IPVI+L Sbjct: 44 ELKAFDETKAGVKGIVDTGITKIPRIFIDQPKNLDR----ISVCRGKSDI---KIPVINL 96 Query: 237 GCSDXXXXXXXXXXXXXG-----CGFFQVTGHGVPEXXXXXXXXXXXXFHGADGGEGTEK 401 G GFFQ+ HG+P+ FH D K Sbjct: 97 NGLSSNSEIRREIVEKIGEASEKYGFFQIVNHGIPQDVMDKMVDGVRKFHEQD---DQIK 153 Query: 402 ARLYSRDPV-KPVKYQCNFDLYESPVANWRDTLHVRM 509 + YSRD K Y N+ L NWRDT+ M Sbjct: 154 RQYYSRDRFNKNFLYSSNYVLIPGIACNWRDTMECIM 190
>RF1_METTH (O26964) Peptide chain release factor subunit 1 (Translation| termination factor aRF1) Length = 407 Score = 33.5 bits (75), Expect = 0.34 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 3/35 (8%) Frame = +3 Query: 381 GGEGTEKARLYSRDPVKPVK---YQCNFDLYESPV 476 GG GTEK Y +P +P+K Y CN + Y P+ Sbjct: 98 GGPGTEKMETYVFEPPEPIKTYIYHCNSEFYLEPL 132
>FLS_MATIN (O04395) Flavonol synthase/flavanone 3-hydroxylase (EC 1.14.11.23)| (EC 1.14.11.9) (FLS) (Fragment) Length = 291 Score = 32.7 bits (73), Expect = 0.59 Identities = 13/36 (36%), Positives = 16/36 (44%) Frame = +3 Query: 219 IPVIDLGCSDXXXXXXXXXXXXXGCGFFQVTGHGVP 326 +PV+DL C D G FQV HG+P Sbjct: 2 VPVVDLSCPDEELVARTVVKASEDWGVFQVVNHGIP 37
>RF1_METMP (P61731) Peptide chain release factor subunit 1 (Translation| termination factor aRF1) Length = 419 Score = 32.3 bits (72), Expect = 0.77 Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 3/38 (7%) Frame = +3 Query: 381 GGEGTEKARLYSRDPVKPVK---YQCNFDLYESPVANW 485 GG GTEK +Y +P +PVK Y+C+ Y P+ ++ Sbjct: 98 GGPGTEKMEVYVLEPPEPVKTFVYRCDSLFYTDPLEDF 135
>FLS1_ARATH (Q96330) Flavonol synthase/flavanone 3-hydroxylase (EC 1.14.11.23)| (EC 1.14.11.9) (FLS 1) Length = 336 Score = 32.0 bits (71), Expect = 1.0 Identities = 15/40 (37%), Positives = 17/40 (42%) Frame = +3 Query: 207 PAGAIPVIDLGCSDXXXXXXXXXXXXXGCGFFQVTGHGVP 326 P AIPV+DL D G FQV HG+P Sbjct: 39 PTPAIPVVDLSDPDEESVRRAVVKASEEWGLFQVVNHGIP 78
>ACCO_MUSAC (Q9FR99) 1-aminocyclopropane-1-carboxylate oxidase (EC 1.14.17.4)| (ACC oxidase) (Ethylene-forming enzyme) (EFE) Length = 306 Score = 31.6 bits (70), Expect = 1.3 Identities = 16/40 (40%), Positives = 18/40 (45%), Gaps = 3/40 (7%) Frame = +3 Query: 216 AIPVIDLGCSDXXXXXXXXXXXXXGC---GFFQVTGHGVP 326 AIPVID D GC GFFQ+ HG+P Sbjct: 2 AIPVIDFSKLDGKERAETMARIANGCEEWGFFQLVNHGIP 41
>CORO7_HUMAN (P57737) Coronin-7 (70 kDa WD repeat tumor rejection antigen| homolog) Length = 925 Score = 30.8 bits (68), Expect = 2.2 Identities = 14/29 (48%), Positives = 19/29 (65%) Frame = +1 Query: 169 TPPSSQSQAANKNQLGPSR*STSGAATAP 255 +PPSS + + + LGPS STSG T+P Sbjct: 430 SPPSSLTSPSTPSSLGPSLSSTSGIGTSP 458
>ZBTB4_HUMAN (Q9P1Z0) Zinc finger and BTB domain-containing protein 4| (KAISO-like zinc finger protein 1) (KAISO-L1) Length = 1013 Score = 30.4 bits (67), Expect = 2.9 Identities = 15/44 (34%), Positives = 26/44 (59%) Frame = +1 Query: 151 ATTTNRTPPSSQSQAANKNQLGPSR*STSGAATAPPWLPPSAWP 282 ATTT + SS S +++ + S S+S +++ PP PP++ P Sbjct: 79 ATTTAASSSSSSSSSSSSSSSSASSSSSSSSSSPPPASPPASSP 122
>FLS_EUSGR (Q9M547) Flavonol synthase/flavanone 3-hydroxylase (EC 1.14.11.23)| (EC 1.14.11.9) (FLS) Length = 334 Score = 30.0 bits (66), Expect = 3.8 Identities = 14/36 (38%), Positives = 16/36 (44%) Frame = +3 Query: 219 IPVIDLGCSDXXXXXXXXXXXXXGCGFFQVTGHGVP 326 +PVIDL SD G FQV HG+P Sbjct: 43 VPVIDLSDSDEKKIVGLVSEASKEWGIFQVVNHGIP 78
>TRKG_ECOLI (P23849) Trk system potassium uptake protein trkG| Length = 485 Score = 29.6 bits (65), Expect = 5.0 Identities = 13/41 (31%), Positives = 22/41 (53%) Frame = +3 Query: 33 PVAYDRTADLRALDATFAGVSGLVASGLTHVPRIFRVPEGH 155 P+ D +L +DA F GVSG+ +G T + + +P + Sbjct: 90 PLWIDSELNLTFIDALFEGVSGITTTGATVIDDVSSLPRAY 130
>RF1_METJA (Q58239) Peptide chain release factor subunit 1 (Translation| termination factor aRF1) Length = 421 Score = 29.6 bits (65), Expect = 5.0 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 3/34 (8%) Frame = +3 Query: 384 GEGTEKARLYSRDPVKPVK---YQCNFDLYESPV 476 G GTEK Y +P +P+K Y+C+ + Y P+ Sbjct: 99 GPGTEKMETYVIEPPEPIKTYIYRCDSEFYLEPL 132
>YJ53_YEAST (P47129) Hypothetical 35.5 kDa protein in MIR1-STE18 intergenic| region Length = 309 Score = 29.6 bits (65), Expect = 5.0 Identities = 14/39 (35%), Positives = 19/39 (48%) Frame = +1 Query: 154 TTTNRTPPSSQSQAANKNQLGPSR*STSGAATAPPWLPP 270 T NR P +++ + PSR S S + PP LPP Sbjct: 184 TLPNRKPNPPPNRSQRMQNIAPSRSSESTPTSGPPLLPP 222
>ATPBM_HEVBR (P29685) ATP synthase beta chain, mitochondrial precursor (EC| 3.6.3.14) Length = 562 Score = 29.3 bits (64), Expect = 6.5 Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 8/58 (13%) Frame = +1 Query: 148 KATTTNRTPPSSQSQAANKNQLGP--------SR*STSGAATAPPWLPPSAWPRQGAG 297 K+ +N P S S ++K++ P + +TS AA APP PP A P G G Sbjct: 21 KSPISNINPKLSSSSPSSKSRASPYGYLLTRAAEYATSAAAAAPP-QPPPAKPEGGKG 77
>TMC2_HUMAN (Q8TDI7) Transmembrane cochlear-expressed protein 2| Length = 906 Score = 28.9 bits (63), Expect = 8.5 Identities = 22/55 (40%), Positives = 27/55 (49%), Gaps = 3/55 (5%) Frame = +1 Query: 145 LKATTTNRTPPS-SQSQAANKNQLGPSR*STSGAATAPP--WLPPSAWPRQGAGS 300 L+ T TPPS SQSQA +K GP +++ T P LP S P G S Sbjct: 829 LQLTKEETTPPSASQSQAMDKKAQGPGTSNSASRTTLPASGHLPISRPPGIGPDS 883 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.315 0.126 0.410 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 53,802,528 Number of Sequences: 219361 Number of extensions: 987935 Number of successful extensions: 3286 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 3152 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3274 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3754426130 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits)