ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bart55b06 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_474682.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1128 Score = 149 bits (75), Expect = 1e-32 Identities = 218/263 (82%), Gaps = 2/263 (0%) Strand = Plus / Plus Query: 248 ccgcgccgccgtggttgccgccgtccgcctggccgcggcagggtgcgggttctttcaggt 307 |||||| |||||||| | ||||||||| | ||| ||||| | ||| |||||||| ||||| Sbjct: 240 ccgcgcggccgtggtcgacgccgtccggcgggcggcggcggagtgggggttcttccaggt 299 Query: 308 gacgggccacggcgtgccggaggcggcgatggccgctgcgaccgacgcggtgcgggcgtt 367 |||||| ||||| || || || ||||||| ||| ||| | | ||||| ||| ||||| Sbjct: 300 gacggggcacggggttcccctcgccgcgatggacgccgcggcgggcgcggcgcgcgcgtt 359 Query: 368 ccacggtgccgacggcggcgagggcaccgagaaggcacggctctactcgcgtgaccccgt 427 ||||| ||| ||||||||||||| ||| ||||| |||||||||||||| || |||| Sbjct: 360 ccacgagtccggaggcggcgagggcagcgacaaggcgcggctctactcgcgcgagcccgg 419 Query: 428 ta-agccggtcaagtaccagtgcaacttcgacctctacgagtcgccggtggccaattggc 486 | ||||| |||||||||| |||||||||||||| ||| |||||||||||||||| |||| Sbjct: 420 gagagccg-tcaagtaccactgcaacttcgacctgtaccagtcgccggtggccaactggc 478 Query: 487 gcgacacgctccacgtccgcatg 509 ||||||||||| || |||||||| Sbjct: 479 gcgacacgctctacctccgcatg 501 Score = 89.7 bits (45), Expect = 8e-15 Identities = 84/97 (86%) Strand = Plus / Plus Query: 42 tacgaccgcacggccgacctccgcgcgctggacgccaccttcgccggcgtcagcggcctc 101 ||||||||||| ||||| ||||||||||| ||||||||| || |||||||| |||||||| Sbjct: 43 tacgaccgcaccgccgagctccgcgcgctcgacgccaccctctccggcgtccgcggcctc 102 Query: 102 gtcgcctccggtctcacgcacgtcccccgcatcttcc 138 ||||| || || ||| ||| ||||||||||||||| Sbjct: 103 gtcgcgtcgggcgccacccacctcccccgcatcttcc 139
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 149 bits (75), Expect = 1e-32 Identities = 218/263 (82%), Gaps = 2/263 (0%) Strand = Plus / Plus Query: 248 ccgcgccgccgtggttgccgccgtccgcctggccgcggcagggtgcgggttctttcaggt 307 |||||| |||||||| | ||||||||| | ||| ||||| | ||| |||||||| ||||| Sbjct: 5555503 ccgcgcggccgtggtcgacgccgtccggcgggcggcggcggagtgggggttcttccaggt 5555562 Query: 308 gacgggccacggcgtgccggaggcggcgatggccgctgcgaccgacgcggtgcgggcgtt 367 |||||| ||||| || || || ||||||| ||| ||| | | ||||| ||| ||||| Sbjct: 5555563 gacggggcacggggttcccctcgccgcgatggacgccgcggcgggcgcggcgcgcgcgtt 5555622 Query: 368 ccacggtgccgacggcggcgagggcaccgagaaggcacggctctactcgcgtgaccccgt 427 ||||| ||| ||||||||||||| ||| ||||| |||||||||||||| || |||| Sbjct: 5555623 ccacgagtccggaggcggcgagggcagcgacaaggcgcggctctactcgcgcgagcccgg 5555682 Query: 428 ta-agccggtcaagtaccagtgcaacttcgacctctacgagtcgccggtggccaattggc 486 | ||||| |||||||||| |||||||||||||| ||| |||||||||||||||| |||| Sbjct: 5555683 gagagccg-tcaagtaccactgcaacttcgacctgtaccagtcgccggtggccaactggc 5555741 Query: 487 gcgacacgctccacgtccgcatg 509 ||||||||||| || |||||||| Sbjct: 5555742 gcgacacgctctacctccgcatg 5555764 Score = 91.7 bits (46), Expect = 2e-15 Identities = 100/118 (84%) Strand = Plus / Plus Query: 380 cggcggcgagggcaccgagaaggcacggctctactcgcgtgaccccgttaagccggtcaa 439 |||| ||||||||| ||| ||||| |||||||||||||||||||| | | | | | ||| Sbjct: 5525834 cggcagcgagggcagcgacaaggcgcggctctactcgcgtgacccggcgagggccgccaa 5525893 Query: 440 gtaccagtgcaacttcgacctctacgagtcgccggtggccaattggcgcgacacgctc 497 |||| | |||||||||||||| ||| ||||||||| |||||| |||||||||| |||| Sbjct: 5525894 gtacaactgcaacttcgacctgtaccagtcgccggcggccaactggcgcgacatgctc 5525951 Score = 89.7 bits (45), Expect = 8e-15 Identities = 84/97 (86%) Strand = Plus / Plus Query: 42 tacgaccgcacggccgacctccgcgcgctggacgccaccttcgccggcgtcagcggcctc 101 ||||||||||| ||||| ||||||||||| ||||||||| || |||||||| |||||||| Sbjct: 5555306 tacgaccgcaccgccgagctccgcgcgctcgacgccaccctctccggcgtccgcggcctc 5555365 Query: 102 gtcgcctccggtctcacgcacgtcccccgcatcttcc 138 ||||| || || ||| ||| ||||||||||||||| Sbjct: 5555366 gtcgcgtcgggcgccacccacctcccccgcatcttcc 5555402 Score = 56.0 bits (28), Expect = 1e-04 Identities = 70/84 (83%) Strand = Plus / Plus Query: 62 ccgcgcgctggacgccaccttcgccggcgtcagcggcctcgtcgcctccggtctcacgca 121 ||||||||| |||||||||| |||| ||| ||||||||||||||| || |||| Sbjct: 5525547 ccgcgcgctcaacgccaccttgtccggagtccacggcctcgtcgcctcgggcgtcaccgc 5525606 Query: 122 cgtcccccgcatcttccgcgtccc 145 ||||||| |||||||||||||||| Sbjct: 5525607 cgtccccagcatcttccgcgtccc 5525630 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 304 aggtgacgggccacggcgtgccgg 327 ||||||||||||||||||| |||| Sbjct: 5525786 aggtgacgggccacggcgtaccgg 5525809
>dbj|AK067970.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013124E20, full insert sequence Length = 1387 Score = 149 bits (75), Expect = 1e-32 Identities = 218/263 (82%), Gaps = 2/263 (0%) Strand = Plus / Plus Query: 248 ccgcgccgccgtggttgccgccgtccgcctggccgcggcagggtgcgggttctttcaggt 307 |||||| |||||||| | ||||||||| | ||| ||||| | ||| |||||||| ||||| Sbjct: 250 ccgcgcggccgtggtcgacgccgtccggcgggcggcggcggagtgggggttcttccaggt 309 Query: 308 gacgggccacggcgtgccggaggcggcgatggccgctgcgaccgacgcggtgcgggcgtt 367 |||||| ||||| || || || ||||||| ||| ||| | | ||||| ||| ||||| Sbjct: 310 gacggggcacggggttcccctcgccgcgatggacgccgcggcgggcgcggcgcgcgcgtt 369 Query: 368 ccacggtgccgacggcggcgagggcaccgagaaggcacggctctactcgcgtgaccccgt 427 ||||| ||| ||||||||||||| ||| ||||| |||||||||||||| || |||| Sbjct: 370 ccacgagtccggaggcggcgagggcagcgacaaggcgcggctctactcgcgcgagcccgg 429 Query: 428 ta-agccggtcaagtaccagtgcaacttcgacctctacgagtcgccggtggccaattggc 486 | ||||| |||||||||| |||||||||||||| ||| |||||||||||||||| |||| Sbjct: 430 gagagccg-tcaagtaccactgcaacttcgacctgtaccagtcgccggtggccaactggc 488 Query: 487 gcgacacgctccacgtccgcatg 509 ||||||||||| || |||||||| Sbjct: 489 gcgacacgctctacctccgcatg 511 Score = 89.7 bits (45), Expect = 8e-15 Identities = 84/97 (86%) Strand = Plus / Plus Query: 42 tacgaccgcacggccgacctccgcgcgctggacgccaccttcgccggcgtcagcggcctc 101 ||||||||||| ||||| ||||||||||| ||||||||| || |||||||| |||||||| Sbjct: 53 tacgaccgcaccgccgagctccgcgcgctcgacgccaccctctccggcgtccgcggcctc 112 Query: 102 gtcgcctccggtctcacgcacgtcccccgcatcttcc 138 ||||| || || ||| ||| ||||||||||||||| Sbjct: 113 gtcgcgtcgggcgccacccacctcccccgcatcttcc 149
>emb|AL662994.3|OSJN00192 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0006L01, complete sequence Length = 162227 Score = 149 bits (75), Expect = 1e-32 Identities = 218/263 (82%), Gaps = 2/263 (0%) Strand = Plus / Plus Query: 248 ccgcgccgccgtggttgccgccgtccgcctggccgcggcagggtgcgggttctttcaggt 307 |||||| |||||||| | ||||||||| | ||| ||||| | ||| |||||||| ||||| Sbjct: 12710 ccgcgcggccgtggtcgacgccgtccggcgggcggcggcggagtgggggttcttccaggt 12769 Query: 308 gacgggccacggcgtgccggaggcggcgatggccgctgcgaccgacgcggtgcgggcgtt 367 |||||| ||||| || || || ||||||| ||| ||| | | ||||| ||| ||||| Sbjct: 12770 gacggggcacggggttcccctcgccgcgatggacgccgcggcgggcgcggcgcgcgcgtt 12829 Query: 368 ccacggtgccgacggcggcgagggcaccgagaaggcacggctctactcgcgtgaccccgt 427 ||||| ||| ||||||||||||| ||| ||||| |||||||||||||| || |||| Sbjct: 12830 ccacgagtccggaggcggcgagggcagcgacaaggcgcggctctactcgcgcgagcccgg 12889 Query: 428 ta-agccggtcaagtaccagtgcaacttcgacctctacgagtcgccggtggccaattggc 486 | ||||| |||||||||| |||||||||||||| ||| |||||||||||||||| |||| Sbjct: 12890 gagagccg-tcaagtaccactgcaacttcgacctgtaccagtcgccggtggccaactggc 12948 Query: 487 gcgacacgctccacgtccgcatg 509 ||||||||||| || |||||||| Sbjct: 12949 gcgacacgctctacctccgcatg 12971 Score = 89.7 bits (45), Expect = 8e-15 Identities = 84/97 (86%) Strand = Plus / Plus Query: 42 tacgaccgcacggccgacctccgcgcgctggacgccaccttcgccggcgtcagcggcctc 101 ||||||||||| ||||| ||||||||||| ||||||||| || |||||||| |||||||| Sbjct: 12513 tacgaccgcaccgccgagctccgcgcgctcgacgccaccctctccggcgtccgcggcctc 12572 Query: 102 gtcgcctccggtctcacgcacgtcccccgcatcttcc 138 ||||| || || ||| ||| ||||||||||||||| Sbjct: 12573 gtcgcgtcgggcgccacccacctcccccgcatcttcc 12609
>emb|AL662934.3|OSJN00136 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0027O01, complete sequence Length = 150283 Score = 149 bits (75), Expect = 1e-32 Identities = 218/263 (82%), Gaps = 2/263 (0%) Strand = Plus / Plus Query: 248 ccgcgccgccgtggttgccgccgtccgcctggccgcggcagggtgcgggttctttcaggt 307 |||||| |||||||| | ||||||||| | ||| ||||| | ||| |||||||| ||||| Sbjct: 110133 ccgcgcggccgtggtcgacgccgtccggcgggcggcggcggagtgggggttcttccaggt 110192 Query: 308 gacgggccacggcgtgccggaggcggcgatggccgctgcgaccgacgcggtgcgggcgtt 367 |||||| ||||| || || || ||||||| ||| ||| | | ||||| ||| ||||| Sbjct: 110193 gacggggcacggggttcccctcgccgcgatggacgccgcggcgggcgcggcgcgcgcgtt 110252 Query: 368 ccacggtgccgacggcggcgagggcaccgagaaggcacggctctactcgcgtgaccccgt 427 ||||| ||| ||||||||||||| ||| ||||| |||||||||||||| || |||| Sbjct: 110253 ccacgagtccggaggcggcgagggcagcgacaaggcgcggctctactcgcgcgagcccgg 110312 Query: 428 ta-agccggtcaagtaccagtgcaacttcgacctctacgagtcgccggtggccaattggc 486 | ||||| |||||||||| |||||||||||||| ||| |||||||||||||||| |||| Sbjct: 110313 gagagccg-tcaagtaccactgcaacttcgacctgtaccagtcgccggtggccaactggc 110371 Query: 487 gcgacacgctccacgtccgcatg 509 ||||||||||| || |||||||| Sbjct: 110372 gcgacacgctctacctccgcatg 110394 Score = 91.7 bits (46), Expect = 2e-15 Identities = 100/118 (84%) Strand = Plus / Plus Query: 380 cggcggcgagggcaccgagaaggcacggctctactcgcgtgaccccgttaagccggtcaa 439 |||| ||||||||| ||| ||||| |||||||||||||||||||| | | | | | ||| Sbjct: 80464 cggcagcgagggcagcgacaaggcgcggctctactcgcgtgacccggcgagggccgccaa 80523 Query: 440 gtaccagtgcaacttcgacctctacgagtcgccggtggccaattggcgcgacacgctc 497 |||| | |||||||||||||| ||| ||||||||| |||||| |||||||||| |||| Sbjct: 80524 gtacaactgcaacttcgacctgtaccagtcgccggcggccaactggcgcgacatgctc 80581 Score = 89.7 bits (45), Expect = 8e-15 Identities = 84/97 (86%) Strand = Plus / Plus Query: 42 tacgaccgcacggccgacctccgcgcgctggacgccaccttcgccggcgtcagcggcctc 101 ||||||||||| ||||| ||||||||||| ||||||||| || |||||||| |||||||| Sbjct: 109936 tacgaccgcaccgccgagctccgcgcgctcgacgccaccctctccggcgtccgcggcctc 109995 Query: 102 gtcgcctccggtctcacgcacgtcccccgcatcttcc 138 ||||| || || ||| ||| ||||||||||||||| Sbjct: 109996 gtcgcgtcgggcgccacccacctcccccgcatcttcc 110032 Score = 56.0 bits (28), Expect = 1e-04 Identities = 70/84 (83%) Strand = Plus / Plus Query: 62 ccgcgcgctggacgccaccttcgccggcgtcagcggcctcgtcgcctccggtctcacgca 121 ||||||||| |||||||||| |||| ||| ||||||||||||||| || |||| Sbjct: 80177 ccgcgcgctcaacgccaccttgtccggagtccacggcctcgtcgcctcgggcgtcaccgc 80236 Query: 122 cgtcccccgcatcttccgcgtccc 145 ||||||| |||||||||||||||| Sbjct: 80237 cgtccccagcatcttccgcgtccc 80260 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 304 aggtgacgggccacggcgtgccgg 327 ||||||||||||||||||| |||| Sbjct: 80416 aggtgacgggccacggcgtaccgg 80439
>gb|AY110514.1| Zea mays CL948_1 mRNA sequence Length = 1344 Score = 67.9 bits (34), Expect = 3e-08 Identities = 52/58 (89%) Strand = Plus / Plus Query: 437 caagtaccagtgcaacttcgacctctacgagtcgccggtggccaattggcgcgacacg 494 ||||||||| |||||||||||||| ||| |||| || |||||||| |||||||||||| Sbjct: 416 caagtaccactgcaacttcgacctgtaccagtctcccgtggccaactggcgcgacacg 473
>gb|AC130599.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0016G07, complete sequence Length = 123167 Score = 54.0 bits (27), Expect = 5e-04 Identities = 33/35 (94%) Strand = Plus / Minus Query: 293 cgggttctttcaggtgacgggccacggcgtgccgg 327 ||||||||| |||||||||||||||||||||||| Sbjct: 13292 cgggttcttcaaggtgacgggccacggcgtgccgg 13258
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 54.0 bits (27), Expect = 5e-04 Identities = 33/35 (94%) Strand = Plus / Minus Query: 293 cgggttctttcaggtgacgggccacggcgtgccgg 327 ||||||||| |||||||||||||||||||||||| Sbjct: 6642130 cgggttcttcaaggtgacgggccacggcgtgccgg 6642096 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 12 accatgtcggccgcctcctctccc 35 ||||| |||||||||||||||||| Sbjct: 16212143 accatctcggccgcctcctctccc 16212120
>ref|NM_188380.1| Oryza sativa (japonica cultivar-group), Ozsa8106 predicted mRNA Length = 1008 Score = 50.1 bits (25), Expect = 0.007 Identities = 31/33 (93%) Strand = Plus / Plus Query: 294 gggttctttcaggtgacgggccacggcgtgccg 326 |||||||| | |||||||||||||||||||||| Sbjct: 151 gggttcttccgggtgacgggccacggcgtgccg 183
>gb|CP000150.1| Burkholderia sp. 383 chromosome 3, complete sequence Length = 1395069 Score = 50.1 bits (25), Expect = 0.007 Identities = 28/29 (96%) Strand = Plus / Minus Query: 307 tgacgggccacggcgtgccggaggcggcg 335 ||||||||||||||||||||| ||||||| Sbjct: 1284030 tgacgggccacggcgtgccggcggcggcg 1284002
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 50.1 bits (25), Expect = 0.007 Identities = 31/33 (93%) Strand = Plus / Minus Query: 294 gggttctttcaggtgacgggccacggcgtgccg 326 |||||||| | |||||||||||||||||||||| Sbjct: 5971234 gggttcttccgggtgacgggccacggcgtgccg 5971202
>dbj|AP002093.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0466B10 Length = 151806 Score = 50.1 bits (25), Expect = 0.007 Identities = 31/33 (93%) Strand = Plus / Minus Query: 294 gggttctttcaggtgacgggccacggcgtgccg 326 |||||||| | |||||||||||||||||||||| Sbjct: 39122 gggttcttccgggtgacgggccacggcgtgccg 39090
>dbj|AK108802.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-151-C10, full insert sequence Length = 1336 Score = 50.1 bits (25), Expect = 0.007 Identities = 31/33 (93%) Strand = Plus / Plus Query: 294 gggttctttcaggtgacgggccacggcgtgccg 326 |||||||| | |||||||||||||||||||||| Sbjct: 256 gggttcttccgggtgacgggccacggcgtgccg 288
>gb|AY526909.1| Bordetella phage BIP-1, complete genome Length = 42638 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Minus Query: 244 gcgaccgcgccgccgtggttgcc 266 ||||||||||||||||||||||| Sbjct: 25659 gcgaccgcgccgccgtggttgcc 25637
>gb|AY526908.1| Bordetella phage BMP-1, complete genome Length = 42663 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Minus Query: 244 gcgaccgcgccgccgtggttgcc 266 ||||||||||||||||||||||| Sbjct: 25659 gcgaccgcgccgccgtggttgcc 25637
>gb|AY029185.2| Bordetella phage BPP-1, complete genome Length = 42493 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Minus Query: 244 gcgaccgcgccgccgtggttgcc 266 ||||||||||||||||||||||| Sbjct: 25659 gcgaccgcgccgccgtggttgcc 25637
>ref|XM_482188.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1478 Score = 44.1 bits (22), Expect = 0.44 Identities = 43/50 (86%) Strand = Plus / Plus Query: 447 tgcaacttcgacctctacgagtcgccggtggccaattggcgcgacacgct 496 |||||||||||||| | | ||||||||| ||| | |||||||||||||| Sbjct: 467 tgcaacttcgacctgttccagtcgccggcggcgcagtggcgcgacacgct 516
>gb|AY596295.1| Haloarcula marismortui ATCC 43049 plasmid pNG600, complete sequence Length = 155300 Score = 44.1 bits (22), Expect = 0.44 Identities = 22/22 (100%) Strand = Plus / Minus Query: 454 tcgacctctacgagtcgccggt 475 |||||||||||||||||||||| Sbjct: 60483 tcgacctctacgagtcgccggt 60462
>dbj|AB213479.1| Oryza meridionalis OsGA20ox2 gene for gibberellin-20 oxidase-2, partial cds, haplotype: ME2 Length = 1474 Score = 44.1 bits (22), Expect = 0.44 Identities = 28/30 (93%) Strand = Plus / Plus Query: 293 cgggttctttcaggtgacgggccacggcgt 322 ||||||||| |||||| ||||||||||||| Sbjct: 858 cgggttcttccaggtgtcgggccacggcgt 887
>dbj|AB213478.1| Oryza meridionalis OsGA20ox2 gene for gibberellin-20 oxidase-2, partial cds, haplotype: ME1 Length = 1474 Score = 44.1 bits (22), Expect = 0.44 Identities = 28/30 (93%) Strand = Plus / Plus Query: 293 cgggttctttcaggtgacgggccacggcgt 322 ||||||||| |||||| ||||||||||||| Sbjct: 858 cgggttcttccaggtgtcgggccacggcgt 887
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 44.1 bits (22), Expect = 0.44 Identities = 43/50 (86%) Strand = Plus / Minus Query: 447 tgcaacttcgacctctacgagtcgccggtggccaattggcgcgacacgct 496 |||||||||||||| | | ||||||||| ||| | |||||||||||||| Sbjct: 18485558 tgcaacttcgacctgttccagtcgccggcggcgcagtggcgcgacacgct 18485509 Score = 40.1 bits (20), Expect = 6.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 469 cgccggtggccaattggcgcgacacgct 496 |||||| |||||| |||||||||||||| Sbjct: 18575929 cgccggcggccaactggcgcgacacgct 18575956
>dbj|AP004634.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0671F11 Length = 159409 Score = 44.1 bits (22), Expect = 0.44 Identities = 43/50 (86%) Strand = Plus / Minus Query: 447 tgcaacttcgacctctacgagtcgccggtggccaattggcgcgacacgct 496 |||||||||||||| | | ||||||||| ||| | |||||||||||||| Sbjct: 67581 tgcaacttcgacctgttccagtcgccggcggcgcagtggcgcgacacgct 67532 Score = 40.1 bits (20), Expect = 6.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 469 cgccggtggccaattggcgcgacacgct 496 |||||| |||||| |||||||||||||| Sbjct: 157952 cgccggcggccaactggcgcgacacgct 157979
>dbj|AK068286.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013149K15, full insert sequence Length = 1478 Score = 44.1 bits (22), Expect = 0.44 Identities = 43/50 (86%) Strand = Plus / Plus Query: 447 tgcaacttcgacctctacgagtcgccggtggccaattggcgcgacacgct 496 |||||||||||||| | | ||||||||| ||| | |||||||||||||| Sbjct: 467 tgcaacttcgacctgttccagtcgccggcggcgcagtggcgcgacacgct 516
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 44.1 bits (22), Expect = 0.44 Identities = 28/30 (93%) Strand = Plus / Plus Query: 66 gcgctggacgccaccttcgccggcgtcagc 95 |||||||| ||||||||||||| ||||||| Sbjct: 2254129 gcgctggaggccaccttcgccgccgtcagc 2254158
>gb|AC097277.6| Oryza sativa chromosome 3 BAC OSJNBa0022C08 genomic sequence, complete sequence Length = 150155 Score = 42.1 bits (21), Expect = 1.7 Identities = 42/49 (85%) Strand = Plus / Plus Query: 449 caacttcgacctctacgagtcgccggtggccaattggcgcgacacgctc 497 |||||||||||| | |||||| || | ||||| ||||||||||||||| Sbjct: 14022 caacttcgacctgttcgagtcccccgccgccaactggcgcgacacgctc 14070
>gb|AY523973.1|AY523972S2 Azospirillum brasilense plasmid 90 MDa, partial sequence Length = 67651 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 377 cgacggcggcgagggcaccga 397 ||||||||||||||||||||| Sbjct: 53176 cgacggcggcgagggcaccga 53196
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 42.1 bits (21), Expect = 1.7 Identities = 42/49 (85%) Strand = Plus / Minus Query: 449 caacttcgacctctacgagtcgccggtggccaattggcgcgacacgctc 497 |||||||||||| | |||||| || | ||||| ||||||||||||||| Sbjct: 27290373 caacttcgacctgttcgagtcccccgccgccaactggcgcgacacgctc 27290325
>gb|AE008877.1| Salmonella typhimurium LT2, section 181 of 220 of the complete genome Length = 22492 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Minus Query: 305 ggtgacgggccacggcgtgccggaggcgg 333 ||||||| ||||||||| ||||||||||| Sbjct: 16566 ggtgacgcgccacggcgagccggaggcgg 16538
>gb|AE008800.1| Salmonella typhimurium LT2, section 104 of 220 of the complete genome Length = 22908 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Minus Query: 305 ggtgacgggccacggcgtgccggaggcgg 333 ||||||| ||||||||| ||||||||||| Sbjct: 17349 ggtgacgcgccacggcgagccggaggcgg 17321
>emb|AL627274.1| Salmonella enterica serovar Typhi (Salmonella typhi) strain CT18, complete chromosome; segment 10/20 Length = 256050 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Minus Query: 305 ggtgacgggccacggcgtgccggaggcgg 333 ||||||| ||||||||| ||||||||||| Sbjct: 5223 ggtgacgcgccacggcgagccggaggcgg 5195
>emb|AL627280.1| Salmonella enterica serovar Typhi (Salmonella typhi) strain CT18, complete chromosome; segment 16/20 Length = 245050 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Plus Query: 305 ggtgacgggccacggcgtgccggaggcgg 333 ||||||| ||||||||| ||||||||||| Sbjct: 106525 ggtgacgcgccacggcgagccggaggcgg 106553
>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome Length = 3561584 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Plus Query: 344 tgcgaccgacgcggtgcgggcgttccacg 372 |||| ||||||||||||| |||||||||| Sbjct: 643657 tgcgcccgacgcggtgcgcgcgttccacg 643685
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 42.1 bits (21), Expect = 1.7 Identities = 42/49 (85%) Strand = Plus / Minus Query: 449 caacttcgacctctacgagtcgccggtggccaattggcgcgacacgctc 497 |||||||||||| | |||||| || | ||||| ||||||||||||||| Sbjct: 27381696 caacttcgacctgttcgagtcccccgccgccaactggcgcgacacgctc 27381648
>gb|CP000026.1| Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150 Length = 4585229 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Minus Query: 305 ggtgacgggccacggcgtgccggaggcgg 333 ||||||| ||||||||| ||||||||||| Sbjct: 3802263 ggtgacgcgccacggcgagccggaggcgg 3802235 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Plus Query: 305 ggtgacgggccacggcgtgccggaggcgg 333 ||||||| ||||||||| ||||||||||| Sbjct: 695996 ggtgacgcgccacggcgagccggaggcgg 696024
>gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome Length = 4791961 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Plus Query: 305 ggtgacgggccacggcgtgccggaggcgg 333 ||||||| ||||||||| ||||||||||| Sbjct: 3820015 ggtgacgcgccacggcgagccggaggcgg 3820043 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Plus Query: 305 ggtgacgggccacggcgtgccggaggcgg 333 ||||||| ||||||||| ||||||||||| Sbjct: 698490 ggtgacgcgccacggcgagccggaggcgg 698518
>gb|AE017220.1| Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67, complete genome Length = 4755700 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Minus Query: 305 ggtgacgggccacggcgtgccggaggcgg 333 ||||||| ||||||||| ||||||||||| Sbjct: 3954944 ggtgacgcgccacggcgagccggaggcgg 3954916 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Minus Query: 305 ggtgacgggccacggcgtgccggaggcgg 333 ||||||| ||||||||| ||||||||||| Sbjct: 2363556 ggtgacgcgccacggcgagccggaggcgg 2363528
>ref|XM_482202.1| Oryza sativa (japonica cultivar-group), mRNA Length = 888 Score = 40.1 bits (20), Expect = 6.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 469 cgccggtggccaattggcgcgacacgct 496 |||||| |||||| |||||||||||||| Sbjct: 665 cgccggcggccaactggcgcgacacgct 692
>gb|AC134928.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone B1164G01, complete sequence Length = 151938 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 12 accatgtcggccgcctcctctccc 35 ||||| |||||||||||||||||| Sbjct: 59500 accatctcggccgcctcctctccc 59477
>gb|AC144742.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0052F16, complete sequence Length = 162082 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 12 accatgtcggccgcctcctctccc 35 ||||| |||||||||||||||||| Sbjct: 3496 accatctcggccgcctcctctccc 3473
>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome Length = 2584158 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 98 cctcgtcgcctccggtctcacgca 121 ||||||||||||||| |||||||| Sbjct: 623624 cctcgtcgcctccggcctcacgca 623601
>gb|CP000058.1| Pseudomonas syringae pv. phaseolicola 1448A, complete genome Length = 5928787 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 369 cacggtgccgacggcggcgagggc 392 ||||||||||||||||||| |||| Sbjct: 3559476 cacggtgccgacggcggcgtgggc 3559499
>emb|AL591788.1|SME591788 Sinorhizobium meliloti 1021 complete chromosome; segment 7/12 Length = 306250 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 319 gcgtgccggaggcggcgatg 338 |||||||||||||||||||| Sbjct: 292990 gcgtgccggaggcggcgatg 292971
>emb|X53002.1|HSINTB5 Human mRNA for integrin beta-5 subunit Length = 3416 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 239 gtgcagcgaccgcgccgccg 258 |||||||||||||||||||| Sbjct: 298 gtgcagcgaccgcgccgccg 317
>emb|BX572599.1| Rhodopseudomonas palustris CGA009 complete genome; segment 7/16 Length = 349142 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 319 gcgtgccggaggcggcgatg 338 |||||||||||||||||||| Sbjct: 134329 gcgtgccggaggcggcgatg 134348
>emb|AL939119.1|SCO939119 Streptomyces coelicolor A3(2) complete genome; segment 16/29 Length = 299050 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 264 gccgccgtccgcctggccgc 283 |||||||||||||||||||| Sbjct: 163442 gccgccgtccgcctggccgc 163461
>emb|AL939108.1|SCO939108 Streptomyces coelicolor A3(2) complete genome; segment 5/29 Length = 339650 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 377 cgacggcggcgagggcaccg 396 |||||||||||||||||||| Sbjct: 181680 cgacggcggcgagggcaccg 181699
>gb|AE012550.1| Xanthomonas campestris pv. campestris str. ATCC 33913, section 458 of 460 of the complete genome Length = 11023 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 375 gccgacggcggcgagggcac 394 |||||||||||||||||||| Sbjct: 2428 gccgacggcggcgagggcac 2409
>ref|NM_002213.3| Homo sapiens integrin, beta 5 (ITGB5), mRNA Length = 3392 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 239 gtgcagcgaccgcgccgccg 258 |||||||||||||||||||| Sbjct: 259 gtgcagcgaccgcgccgccg 278
>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome Length = 5148708 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 375 gccgacggcggcgagggcac 394 |||||||||||||||||||| Sbjct: 5123014 gccgacggcggcgagggcac 5122995
>gb|AY787762.1| Streptomyces filamentosus strain NRRL 11379 daptomycin biosynthetic gene cluster, partial sequence Length = 127559 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 218 catcccggtgatcgacctcgggtg 241 ||||| |||||||||||||||||| Sbjct: 116324 catccgggtgatcgacctcgggtg 116347
>gb|AC026342.34| Homo sapiens 3 BAC RP11-559L12 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 109490 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 239 gtgcagcgaccgcgccgccg 258 |||||||||||||||||||| Sbjct: 95458 gtgcagcgaccgcgccgccg 95477
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 373 gtgccgacggcggcgagggc 392 |||||||||||||||||||| Sbjct: 2866616 gtgccgacggcggcgagggc 2866635
>dbj|AP004193.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1756_G07 Length = 149457 Score = 40.1 bits (20), Expect = 6.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 469 cgccggtggccaattggcgcgacacgct 496 |||||| |||||| |||||||||||||| Sbjct: 3199 cgccggcggccaactggcgcgacacgct 3226
>ref|XM_310823.2| Anopheles gambiae str. PEST ENSANGP00000014822 (ENSANGG00000012333), partial mRNA Length = 6747 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 319 gcgtgccggaggcggcgatg 338 |||||||||||||||||||| Sbjct: 2585 gcgtgccggaggcggcgatg 2604
>gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, complete sequence Length = 3131724 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 89 cgtcagcggcctcgtcgcct 108 |||||||||||||||||||| Sbjct: 824081 cgtcagcggcctcgtcgcct 824100
>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence Length = 3716413 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 84 gccggcgtcagcggcctcgt 103 |||||||||||||||||||| Sbjct: 2289077 gccggcgtcagcggcctcgt 2289096
>gb|BC006541.2| Homo sapiens integrin, beta 5, mRNA (cDNA clone MGC:2338 IMAGE:2958666), complete cds Length = 3392 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 239 gtgcagcgaccgcgccgccg 258 |||||||||||||||||||| Sbjct: 259 gtgcagcgaccgcgccgccg 278
>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence Length = 2914771 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 375 gccgacggcggcgagggcac 394 |||||||||||||||||||| Sbjct: 234488 gccgacggcggcgagggcac 234507
>gb|AC145927.3| Gallus gallus BAC clone CH261-29M22 from chromosome unknown, complete sequence Length = 227692 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 249 cgcgccgccgtggttgccgccgtc 272 ||||||||||| |||||||||||| Sbjct: 171233 cgcgccgccgttgttgccgccgtc 171210
>gb|J05633.1|HUMINTB5A Human integrin beta-5 subunit mRNA, complete cds Length = 3117 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 239 gtgcagcgaccgcgccgccg 258 |||||||||||||||||||| Sbjct: 8 gtgcagcgaccgcgccgccg 27 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,547,693 Number of Sequences: 3902068 Number of extensions: 2547693 Number of successful extensions: 58033 Number of sequences better than 10.0: 60 Number of HSP's better than 10.0 without gapping: 61 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 56031 Number of HSP's gapped (non-prelim): 1990 length of query: 509 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 487 effective length of database: 17,147,199,772 effective search space: 8350686288964 effective search space used: 8350686288964 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
