Clone Name | bart55b05 |
---|---|
Clone Library Name | barley_pub |
>ref|NM_197301.1| Oryza sativa (japonica cultivar-group) unknown protein (OSJNBa0005K07.2), mRNA Length = 2259 Score = 153 bits (77), Expect = 7e-34 Identities = 137/157 (87%) Strand = Plus / Plus Query: 234 ctggcttcttcacgacaggagccatggctaaagattacccagcatctcctaaagcccagc 293 |||||||||| || |||| ||||||||||||||| || || || || || ||||| |||| Sbjct: 133 ctggcttctttactacagcagccatggctaaagagtatcctgcctcccccaaagctcagc 192 Query: 294 atctgcaagaatccaagaagcagcgtctcacctacatacttgtggtgagcgctctctgtg 353 | ||||||||||||||||||||||| ||||||||||| || ||||||||||| ||||| | Sbjct: 193 agctgcaagaatccaagaagcagcggctcacctacatcctcgtggtgagcgcgctctgcg 252 Query: 354 ttgccttctacgtgctcggcgcatggcagaacaccac 390 | ||||||||||| ||||| || |||||||||||||| Sbjct: 253 tcgccttctacgtcctcggtgcgtggcagaacaccac 289
>dbj|AK100601.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023107D05, full insert sequence Length = 2722 Score = 153 bits (77), Expect = 7e-34 Identities = 137/157 (87%) Strand = Plus / Plus Query: 234 ctggcttcttcacgacaggagccatggctaaagattacccagcatctcctaaagcccagc 293 |||||||||| || |||| ||||||||||||||| || || || || || ||||| |||| Sbjct: 314 ctggcttctttactacagcagccatggctaaagagtatcctgcctcccccaaagctcagc 373 Query: 294 atctgcaagaatccaagaagcagcgtctcacctacatacttgtggtgagcgctctctgtg 353 | ||||||||||||||||||||||| ||||||||||| || ||||||||||| ||||| | Sbjct: 374 agctgcaagaatccaagaagcagcggctcacctacatcctcgtggtgagcgcgctctgcg 433 Query: 354 ttgccttctacgtgctcggcgcatggcagaacaccac 390 | ||||||||||| ||||| || |||||||||||||| Sbjct: 434 tcgccttctacgtcctcggtgcgtggcagaacaccac 470
>dbj|AK073237.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033005B11, full insert sequence Length = 2538 Score = 153 bits (77), Expect = 7e-34 Identities = 137/157 (87%) Strand = Plus / Plus Query: 234 ctggcttcttcacgacaggagccatggctaaagattacccagcatctcctaaagcccagc 293 |||||||||| || |||| ||||||||||||||| || || || || || ||||| |||| Sbjct: 217 ctggcttctttactacagcagccatggctaaagagtatcctgcctcccccaaagctcagc 276 Query: 294 atctgcaagaatccaagaagcagcgtctcacctacatacttgtggtgagcgctctctgtg 353 | ||||||||||||||||||||||| ||||||||||| || ||||||||||| ||||| | Sbjct: 277 agctgcaagaatccaagaagcagcggctcacctacatcctcgtggtgagcgcgctctgcg 336 Query: 354 ttgccttctacgtgctcggcgcatggcagaacaccac 390 | ||||||||||| ||||| || |||||||||||||| Sbjct: 337 tcgccttctacgtcctcggtgcgtggcagaacaccac 373
>gb|AC087192.14| Oryza sativa chromosome 10 BAC OSJNBa0005K07 genomic sequence, complete sequence Length = 113606 Score = 139 bits (70), Expect = 1e-29 Identities = 121/138 (87%) Strand = Plus / Plus Query: 253 agccatggctaaagattacccagcatctcctaaagcccagcatctgcaagaatccaagaa 312 ||||||||||||||| || || || || || ||||| ||||| ||||||||||||||||| Sbjct: 56312 agccatggctaaagagtatcctgcctcccccaaagctcagcagctgcaagaatccaagaa 56371 Query: 313 gcagcgtctcacctacatacttgtggtgagcgctctctgtgttgccttctacgtgctcgg 372 |||||| ||||||||||| || ||||||||||| ||||| || ||||||||||| ||||| Sbjct: 56372 gcagcggctcacctacatcctcgtggtgagcgcgctctgcgtcgccttctacgtcctcgg 56431 Query: 373 cgcatggcagaacaccac 390 || |||||||||||||| Sbjct: 56432 tgcgtggcagaacaccac 56449
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 139 bits (70), Expect = 1e-29 Identities = 121/138 (87%) Strand = Plus / Plus Query: 253 agccatggctaaagattacccagcatctcctaaagcccagcatctgcaagaatccaagaa 312 ||||||||||||||| || || || || || ||||| ||||| ||||||||||||||||| Sbjct: 19103741 agccatggctaaagagtatcctgcctcccccaaagctcagcagctgcaagaatccaagaa 19103800 Query: 313 gcagcgtctcacctacatacttgtggtgagcgctctctgtgttgccttctacgtgctcgg 372 |||||| ||||||||||| || ||||||||||| ||||| || ||||||||||| ||||| Sbjct: 19103801 gcagcggctcacctacatcctcgtggtgagcgcgctctgcgtcgccttctacgtcctcgg 19103860 Query: 373 cgcatggcagaacaccac 390 || |||||||||||||| Sbjct: 19103861 tgcgtggcagaacaccac 19103878
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 139 bits (70), Expect = 1e-29 Identities = 121/138 (87%) Strand = Plus / Plus Query: 253 agccatggctaaagattacccagcatctcctaaagcccagcatctgcaagaatccaagaa 312 ||||||||||||||| || || || || || ||||| ||||| ||||||||||||||||| Sbjct: 19115017 agccatggctaaagagtatcctgcctcccccaaagctcagcagctgcaagaatccaagaa 19115076 Query: 313 gcagcgtctcacctacatacttgtggtgagcgctctctgtgttgccttctacgtgctcgg 372 |||||| ||||||||||| || ||||||||||| ||||| || ||||||||||| ||||| Sbjct: 19115077 gcagcggctcacctacatcctcgtggtgagcgcgctctgcgtcgccttctacgtcctcgg 19115136 Query: 373 cgcatggcagaacaccac 390 || |||||||||||||| Sbjct: 19115137 tgcgtggcagaacaccac 19115154
>gb|AY596585.1| Saccharum officinarum clone SCCCST1003D04, complete sequence Length = 2616 Score = 123 bits (62), Expect = 6e-25 Identities = 122/142 (85%) Strand = Plus / Minus Query: 249 caggagccatggctaaagattacccagcatctcctaaagcccagcatctgcaagaatcca 308 ||||||||||||| || || |||||||| ||||| ||||||||||| ||||| ||||||| Sbjct: 2447 caggagccatggcaaaggactacccagcttctcccaaagcccagcagctgcaggaatcca 2388 Query: 309 agaagcagcgtctcacctacatacttgtggtgagcgctctctgtgttgccttctacgtgc 368 |||||||||| || || ||||| || || || ||||| ||||| | ||||||||||| | Sbjct: 2387 agaagcagcgcctgacatacatcctcgttgtaagcgcgctctgcatcgccttctacgtcc 2328 Query: 369 tcggcgcatggcagaacaccac 390 |||| ||||||||||||||||| Sbjct: 2327 tcggtgcatggcagaacaccac 2306
>gb|AC113587.16| Mus musculus chromosome 15, clone RP24-424I13, complete sequence Length = 191054 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 274 agcatctcctaaagcccagca 294 ||||||||||||||||||||| Sbjct: 105059 agcatctcctaaagcccagca 105039
>emb|AL354681.8| Human DNA sequence from clone RP11-534L20 on chromosome 1 Contains the IKBKE gene for inhibitor of kappa light polypeptide gene enhancer in B-cells kinase epsilon, a novel gene, the 5' end of the RASSF5 gene for Ras association (RalGDS/AF-6) domain family 5, a ribosomal protein L7a (RPL7A) pseudogene and a CpG island, complete sequence Length = 107689 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 237 gcttcttcacgacaggagcca 257 ||||||||||||||||||||| Sbjct: 62607 gcttcttcacgacaggagcca 62587
>gb|CP000096.1| Pelodictyon luteolum DSM 273, complete genome Length = 2364842 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 385 caccaccatgccgaatcctg 404 |||||||||||||||||||| Sbjct: 2324024 caccaccatgccgaatcctg 2324043
>ref|XM_959659.1| Neurospora crassa OR74A hypothetical protein (NCU00926.1) partial mRNA Length = 2217 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 385 caccaccatgccgaatcctgtcag 408 |||||||||||||||||| ||||| Sbjct: 607 caccaccatgccgaatccagtcag 630
>ref|XM_325105.1| Neurospora crassa OR74A hypothetical protein (NCU00926.1) partial mRNA Length = 2217 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 385 caccaccatgccgaatcctgtcag 408 |||||||||||||||||| ||||| Sbjct: 607 caccaccatgccgaatccagtcag 630
>gb|AC122826.4| Mus musculus BAC clone RP23-209L3 from chromosome 18, complete sequence Length = 197208 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 295 tctgcaagaatccaagaagc 314 |||||||||||||||||||| Sbjct: 37632 tctgcaagaatccaagaagc 37613
>gb|AC123786.6| Homo sapiens chromosome 18, clone RP11-63N3, complete sequence Length = 136551 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 285 aagcccagcatctgcaagaa 304 |||||||||||||||||||| Sbjct: 35393 aagcccagcatctgcaagaa 35412
>gb|AC114461.6| Rattus norvegicus 1 BAC CH230-14J24 (Children's Hospital Oakland Research Institute) complete sequence Length = 238852 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 273 cagcatctcctaaagcccag 292 |||||||||||||||||||| Sbjct: 235713 cagcatctcctaaagcccag 235694
>emb|BX842638.1| Neurospora crassa DNA linkage group I cosmid contig G17B7 Length = 60687 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 385 caccaccatgccgaatcctgtcag 408 |||||||||||||||||| ||||| Sbjct: 21466 caccaccatgccgaatccagtcag 21443
>emb|BX005109.23| Zebrafish DNA sequence from clone CH211-284K5 in linkage group 25, complete sequence Length = 186632 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 53 tcaggctctcagctcatctc 72 |||||||||||||||||||| Sbjct: 65308 tcaggctctcagctcatctc 65289
>gb|AC084852.4| Homo sapiens chromosome 18, clone CTD-2145J2, complete sequence Length = 107640 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 285 aagcccagcatctgcaagaa 304 |||||||||||||||||||| Sbjct: 105156 aagcccagcatctgcaagaa 105175
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome Length = 4352825 Score = 40.1 bits (20), Expect = 6.8 Identities = 26/28 (92%) Strand = Plus / Plus Query: 127 cggacggagctcgggcgggctcaccgga 154 |||||| |||||||||||| |||||||| Sbjct: 3116406 cggacgcagctcgggcgggatcaccgga 3116433
>gb|AC069027.9|AC069027 Homo sapiens chromosome 18 clone RP11-63N3, complete sequence Length = 144631 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 285 aagcccagcatctgcaagaa 304 |||||||||||||||||||| Sbjct: 35393 aagcccagcatctgcaagaa 35412
>emb|AL773564.8| Zebrafish DNA sequence from clone CH211-204C7, complete sequence Length = 159763 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 53 tcaggctctcagctcatctc 72 |||||||||||||||||||| Sbjct: 89120 tcaggctctcagctcatctc 89101 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,041,244 Number of Sequences: 3902068 Number of extensions: 3041244 Number of successful extensions: 47721 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 21 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 47628 Number of HSP's gapped (non-prelim): 93 length of query: 505 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 483 effective length of database: 17,147,199,772 effective search space: 8282097489876 effective search space used: 8282097489876 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)