ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart55b05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|NM_197301.1| Oryza sativa (japonica cultivar-group) unknown ... 153 7e-34
2dbj|AK100601.1| Oryza sativa (japonica cultivar-group) cDNA clon... 153 7e-34
3dbj|AK073237.1| Oryza sativa (japonica cultivar-group) cDNA clon... 153 7e-34
4gb|AC087192.14| Oryza sativa chromosome 10 BAC OSJNBa0005K07 gen... 139 1e-29
5dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 139 1e-29
6gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 139 1e-29
7gb|AY596585.1| Saccharum officinarum clone SCCCST1003D04, comple... 123 6e-25
8gb|AC113587.16| Mus musculus chromosome 15, clone RP24-424I13, c... 42 1.7
9emb|AL354681.8| Human DNA sequence from clone RP11-534L20 on chr... 42 1.7
10gb|CP000096.1| Pelodictyon luteolum DSM 273, complete genome 40 6.8
11ref|XM_959659.1| Neurospora crassa OR74A hypothetical protein (N... 40 6.8
12ref|XM_325105.1| Neurospora crassa OR74A hypothetical protein (N... 40 6.8
13gb|AC122826.4| Mus musculus BAC clone RP23-209L3 from chromosome... 40 6.8
14gb|AC123786.6| Homo sapiens chromosome 18, clone RP11-63N3, comp... 40 6.8
15gb|AC114461.6| Rattus norvegicus 1 BAC CH230-14J24 (Children's H... 40 6.8
16emb|BX842638.1| Neurospora crassa DNA linkage group I cosmid con... 40 6.8
17emb|BX005109.23| Zebrafish DNA sequence from clone CH211-284K5 i... 40 6.8
18gb|AC084852.4| Homo sapiens chromosome 18, clone CTD-2145J2, com... 40 6.8
19gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome 40 6.8
20gb|AC069027.9|AC069027 Homo sapiens chromosome 18 clone RP11-63N... 40 6.8
21emb|AL773564.8| Zebrafish DNA sequence from clone CH211-204C7, c... 40 6.8

>ref|NM_197301.1| Oryza sativa (japonica cultivar-group) unknown protein
           (OSJNBa0005K07.2), mRNA
          Length = 2259

 Score =  153 bits (77), Expect = 7e-34
 Identities = 137/157 (87%)
 Strand = Plus / Plus

                                                                       
Query: 234 ctggcttcttcacgacaggagccatggctaaagattacccagcatctcctaaagcccagc 293
           |||||||||| || |||| ||||||||||||||| || || || || || ||||| ||||
Sbjct: 133 ctggcttctttactacagcagccatggctaaagagtatcctgcctcccccaaagctcagc 192

                                                                       
Query: 294 atctgcaagaatccaagaagcagcgtctcacctacatacttgtggtgagcgctctctgtg 353
           | ||||||||||||||||||||||| ||||||||||| || ||||||||||| ||||| |
Sbjct: 193 agctgcaagaatccaagaagcagcggctcacctacatcctcgtggtgagcgcgctctgcg 252

                                                
Query: 354 ttgccttctacgtgctcggcgcatggcagaacaccac 390
           | ||||||||||| ||||| || ||||||||||||||
Sbjct: 253 tcgccttctacgtcctcggtgcgtggcagaacaccac 289



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>dbj|AK100601.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023107D05, full
           insert sequence
          Length = 2722

 Score =  153 bits (77), Expect = 7e-34
 Identities = 137/157 (87%)
 Strand = Plus / Plus

                                                                       
Query: 234 ctggcttcttcacgacaggagccatggctaaagattacccagcatctcctaaagcccagc 293
           |||||||||| || |||| ||||||||||||||| || || || || || ||||| ||||
Sbjct: 314 ctggcttctttactacagcagccatggctaaagagtatcctgcctcccccaaagctcagc 373

                                                                       
Query: 294 atctgcaagaatccaagaagcagcgtctcacctacatacttgtggtgagcgctctctgtg 353
           | ||||||||||||||||||||||| ||||||||||| || ||||||||||| ||||| |
Sbjct: 374 agctgcaagaatccaagaagcagcggctcacctacatcctcgtggtgagcgcgctctgcg 433

                                                
Query: 354 ttgccttctacgtgctcggcgcatggcagaacaccac 390
           | ||||||||||| ||||| || ||||||||||||||
Sbjct: 434 tcgccttctacgtcctcggtgcgtggcagaacaccac 470



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>dbj|AK073237.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033005B11, full
           insert sequence
          Length = 2538

 Score =  153 bits (77), Expect = 7e-34
 Identities = 137/157 (87%)
 Strand = Plus / Plus

                                                                       
Query: 234 ctggcttcttcacgacaggagccatggctaaagattacccagcatctcctaaagcccagc 293
           |||||||||| || |||| ||||||||||||||| || || || || || ||||| ||||
Sbjct: 217 ctggcttctttactacagcagccatggctaaagagtatcctgcctcccccaaagctcagc 276

                                                                       
Query: 294 atctgcaagaatccaagaagcagcgtctcacctacatacttgtggtgagcgctctctgtg 353
           | ||||||||||||||||||||||| ||||||||||| || ||||||||||| ||||| |
Sbjct: 277 agctgcaagaatccaagaagcagcggctcacctacatcctcgtggtgagcgcgctctgcg 336

                                                
Query: 354 ttgccttctacgtgctcggcgcatggcagaacaccac 390
           | ||||||||||| ||||| || ||||||||||||||
Sbjct: 337 tcgccttctacgtcctcggtgcgtggcagaacaccac 373



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>gb|AC087192.14| Oryza sativa chromosome 10 BAC OSJNBa0005K07 genomic sequence, complete
             sequence
          Length = 113606

 Score =  139 bits (70), Expect = 1e-29
 Identities = 121/138 (87%)
 Strand = Plus / Plus

                                                                         
Query: 253   agccatggctaaagattacccagcatctcctaaagcccagcatctgcaagaatccaagaa 312
             ||||||||||||||| || || || || || ||||| ||||| |||||||||||||||||
Sbjct: 56312 agccatggctaaagagtatcctgcctcccccaaagctcagcagctgcaagaatccaagaa 56371

                                                                         
Query: 313   gcagcgtctcacctacatacttgtggtgagcgctctctgtgttgccttctacgtgctcgg 372
             |||||| ||||||||||| || ||||||||||| ||||| || ||||||||||| |||||
Sbjct: 56372 gcagcggctcacctacatcctcgtggtgagcgcgctctgcgtcgccttctacgtcctcgg 56431

                               
Query: 373   cgcatggcagaacaccac 390
              || ||||||||||||||
Sbjct: 56432 tgcgtggcagaacaccac 56449



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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score =  139 bits (70), Expect = 1e-29
 Identities = 121/138 (87%)
 Strand = Plus / Plus

                                                                            
Query: 253      agccatggctaaagattacccagcatctcctaaagcccagcatctgcaagaatccaagaa 312
                ||||||||||||||| || || || || || ||||| ||||| |||||||||||||||||
Sbjct: 19103741 agccatggctaaagagtatcctgcctcccccaaagctcagcagctgcaagaatccaagaa 19103800

                                                                            
Query: 313      gcagcgtctcacctacatacttgtggtgagcgctctctgtgttgccttctacgtgctcgg 372
                |||||| ||||||||||| || ||||||||||| ||||| || ||||||||||| |||||
Sbjct: 19103801 gcagcggctcacctacatcctcgtggtgagcgcgctctgcgtcgccttctacgtcctcgg 19103860

                                  
Query: 373      cgcatggcagaacaccac 390
                 || ||||||||||||||
Sbjct: 19103861 tgcgtggcagaacaccac 19103878



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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score =  139 bits (70), Expect = 1e-29
 Identities = 121/138 (87%)
 Strand = Plus / Plus

                                                                            
Query: 253      agccatggctaaagattacccagcatctcctaaagcccagcatctgcaagaatccaagaa 312
                ||||||||||||||| || || || || || ||||| ||||| |||||||||||||||||
Sbjct: 19115017 agccatggctaaagagtatcctgcctcccccaaagctcagcagctgcaagaatccaagaa 19115076

                                                                            
Query: 313      gcagcgtctcacctacatacttgtggtgagcgctctctgtgttgccttctacgtgctcgg 372
                |||||| ||||||||||| || ||||||||||| ||||| || ||||||||||| |||||
Sbjct: 19115077 gcagcggctcacctacatcctcgtggtgagcgcgctctgcgtcgccttctacgtcctcgg 19115136

                                  
Query: 373      cgcatggcagaacaccac 390
                 || ||||||||||||||
Sbjct: 19115137 tgcgtggcagaacaccac 19115154



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>gb|AY596585.1| Saccharum officinarum clone SCCCST1003D04, complete sequence
          Length = 2616

 Score =  123 bits (62), Expect = 6e-25
 Identities = 122/142 (85%)
 Strand = Plus / Minus

                                                                        
Query: 249  caggagccatggctaaagattacccagcatctcctaaagcccagcatctgcaagaatcca 308
            ||||||||||||| || || |||||||| ||||| ||||||||||| ||||| |||||||
Sbjct: 2447 caggagccatggcaaaggactacccagcttctcccaaagcccagcagctgcaggaatcca 2388

                                                                        
Query: 309  agaagcagcgtctcacctacatacttgtggtgagcgctctctgtgttgccttctacgtgc 368
            |||||||||| || || ||||| || || || ||||| |||||  | ||||||||||| |
Sbjct: 2387 agaagcagcgcctgacatacatcctcgttgtaagcgcgctctgcatcgccttctacgtcc 2328

                                  
Query: 369  tcggcgcatggcagaacaccac 390
            |||| |||||||||||||||||
Sbjct: 2327 tcggtgcatggcagaacaccac 2306



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>gb|AC113587.16| Mus musculus chromosome 15, clone RP24-424I13, complete sequence
          Length = 191054

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 274    agcatctcctaaagcccagca 294
              |||||||||||||||||||||
Sbjct: 105059 agcatctcctaaagcccagca 105039



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>emb|AL354681.8| Human DNA sequence from clone RP11-534L20 on chromosome 1 Contains the
             IKBKE gene for inhibitor of kappa light polypeptide gene
             enhancer in B-cells kinase epsilon, a novel gene, the 5'
             end of the RASSF5 gene for Ras association (RalGDS/AF-6)
             domain family 5, a ribosomal protein L7a (RPL7A)
             pseudogene and a CpG island, complete sequence
          Length = 107689

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 237   gcttcttcacgacaggagcca 257
             |||||||||||||||||||||
Sbjct: 62607 gcttcttcacgacaggagcca 62587



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>gb|CP000096.1| Pelodictyon luteolum DSM 273, complete genome
          Length = 2364842

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 385     caccaccatgccgaatcctg 404
               ||||||||||||||||||||
Sbjct: 2324024 caccaccatgccgaatcctg 2324043



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>ref|XM_959659.1| Neurospora crassa OR74A hypothetical protein (NCU00926.1) partial
           mRNA
          Length = 2217

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 385 caccaccatgccgaatcctgtcag 408
           |||||||||||||||||| |||||
Sbjct: 607 caccaccatgccgaatccagtcag 630



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>ref|XM_325105.1| Neurospora crassa OR74A hypothetical protein (NCU00926.1) partial
           mRNA
          Length = 2217

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 385 caccaccatgccgaatcctgtcag 408
           |||||||||||||||||| |||||
Sbjct: 607 caccaccatgccgaatccagtcag 630



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>gb|AC122826.4| Mus musculus BAC clone RP23-209L3 from chromosome 18, complete sequence
          Length = 197208

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 295   tctgcaagaatccaagaagc 314
             ||||||||||||||||||||
Sbjct: 37632 tctgcaagaatccaagaagc 37613



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>gb|AC123786.6| Homo sapiens chromosome 18, clone RP11-63N3, complete sequence
          Length = 136551

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 285   aagcccagcatctgcaagaa 304
             ||||||||||||||||||||
Sbjct: 35393 aagcccagcatctgcaagaa 35412



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>gb|AC114461.6| Rattus norvegicus 1 BAC CH230-14J24 (Children's Hospital Oakland Research
              Institute) complete sequence
          Length = 238852

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 273    cagcatctcctaaagcccag 292
              ||||||||||||||||||||
Sbjct: 235713 cagcatctcctaaagcccag 235694



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>emb|BX842638.1| Neurospora crassa DNA linkage group I cosmid contig G17B7
          Length = 60687

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 385   caccaccatgccgaatcctgtcag 408
             |||||||||||||||||| |||||
Sbjct: 21466 caccaccatgccgaatccagtcag 21443



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>emb|BX005109.23| Zebrafish DNA sequence from clone CH211-284K5 in linkage group 25,
             complete sequence
          Length = 186632

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 53    tcaggctctcagctcatctc 72
             ||||||||||||||||||||
Sbjct: 65308 tcaggctctcagctcatctc 65289



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>gb|AC084852.4| Homo sapiens chromosome 18, clone CTD-2145J2, complete sequence
          Length = 107640

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 285    aagcccagcatctgcaagaa 304
              ||||||||||||||||||||
Sbjct: 105156 aagcccagcatctgcaagaa 105175



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>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome
          Length = 4352825

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 127     cggacggagctcgggcgggctcaccgga 154
               |||||| |||||||||||| ||||||||
Sbjct: 3116406 cggacgcagctcgggcgggatcaccgga 3116433



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>gb|AC069027.9|AC069027 Homo sapiens chromosome 18 clone RP11-63N3, complete sequence
          Length = 144631

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 285   aagcccagcatctgcaagaa 304
             ||||||||||||||||||||
Sbjct: 35393 aagcccagcatctgcaagaa 35412



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>emb|AL773564.8| Zebrafish DNA sequence from clone CH211-204C7, complete sequence
          Length = 159763

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 53    tcaggctctcagctcatctc 72
             ||||||||||||||||||||
Sbjct: 89120 tcaggctctcagctcatctc 89101


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,041,244
Number of Sequences: 3902068
Number of extensions: 3041244
Number of successful extensions: 47721
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 47628
Number of HSP's gapped (non-prelim): 93
length of query: 505
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 483
effective length of database: 17,147,199,772
effective search space: 8282097489876
effective search space used: 8282097489876
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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