Clone Name | bart55b01 |
---|---|
Clone Library Name | barley_pub |
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 58.0 bits (29), Expect = 3e-05 Identities = 68/81 (83%) Strand = Plus / Plus Query: 436 ggtgacgctgccgccgttgccgttggtcccgaatgtgaacgtccctatgccgtttgcggc 495 |||||||||||||||| |||||| |||||| |||||||| || |||||||| ||| Sbjct: 32124564 ggtgacgctgccgccgatgccgtccatcccgaccgtgaacgtgcccatgccgttccaggc 32124623 Query: 496 gccgccgccatcagcgtaggc 516 |||||| ||||| |||||||| Sbjct: 32124624 gccgcctccatcggcgtaggc 32124644 Score = 48.1 bits (24), Expect = 0.032 Identities = 39/44 (88%) Strand = Plus / Plus Query: 294 tccccaccgtgccgcaggtgaccctgccgccgatgccggccatc 337 ||||| |||||||| |||||| ||||||||||||||| ||||| Sbjct: 32124548 tccccgccgtgccggcggtgacgctgccgccgatgccgtccatc 32124591 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 138 gcgcgctcctcctcgccggc 157 |||||||||||||||||||| Sbjct: 21350068 gcgcgctcctcctcgccggc 21350087
>gb|AC084320.10| Oryza sativa chromosome 3 BAC OSJNBa0091J19 genomic sequence, complete sequence Length = 178158 Score = 58.0 bits (29), Expect = 3e-05 Identities = 68/81 (83%) Strand = Plus / Plus Query: 436 ggtgacgctgccgccgttgccgttggtcccgaatgtgaacgtccctatgccgtttgcggc 495 |||||||||||||||| |||||| |||||| |||||||| || |||||||| ||| Sbjct: 125689 ggtgacgctgccgccgatgccgtccatcccgaccgtgaacgtgcccatgccgttccaggc 125748 Query: 496 gccgccgccatcagcgtaggc 516 |||||| ||||| |||||||| Sbjct: 125749 gccgcctccatcggcgtaggc 125769 Score = 48.1 bits (24), Expect = 0.032 Identities = 39/44 (88%) Strand = Plus / Plus Query: 294 tccccaccgtgccgcaggtgaccctgccgccgatgccggccatc 337 ||||| |||||||| |||||| ||||||||||||||| ||||| Sbjct: 125673 tccccgccgtgccggcggtgacgctgccgccgatgccgtccatc 125716
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 58.0 bits (29), Expect = 3e-05 Identities = 68/81 (83%) Strand = Plus / Plus Query: 436 ggtgacgctgccgccgttgccgttggtcccgaatgtgaacgtccctatgccgtttgcggc 495 |||||||||||||||| |||||| |||||| |||||||| || |||||||| ||| Sbjct: 32215076 ggtgacgctgccgccgatgccgtccatcccgaccgtgaacgtgcccatgccgttccaggc 32215135 Query: 496 gccgccgccatcagcgtaggc 516 |||||| ||||| |||||||| Sbjct: 32215136 gccgcctccatcggcgtaggc 32215156 Score = 48.1 bits (24), Expect = 0.032 Identities = 39/44 (88%) Strand = Plus / Plus Query: 294 tccccaccgtgccgcaggtgaccctgccgccgatgccggccatc 337 ||||| |||||||| |||||| ||||||||||||||| ||||| Sbjct: 32215060 tccccgccgtgccggcggtgacgctgccgccgatgccgtccatc 32215103 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 138 gcgcgctcctcctcgccggc 157 |||||||||||||||||||| Sbjct: 21343097 gcgcgctcctcctcgccggc 21343116
>ref|NM_186256.1| Oryza sativa (japonica cultivar-group), mRNA Length = 507 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Plus Query: 427 cgtgcccaaggtgacgctgccgccgttgcc 456 ||||||||||||||||||||||||| |||| Sbjct: 435 cgtgcccaaggtgacgctgccgccgatgcc 464 Score = 48.1 bits (24), Expect = 0.032 Identities = 30/32 (93%) Strand = Plus / Plus Query: 427 cgtgcccaaggtgacgctgccgccgttgccgt 458 |||||| |||||||||||||||||| |||||| Sbjct: 393 cgtgccgaaggtgacgctgccgccgatgccgt 424 Score = 48.1 bits (24), Expect = 0.032 Identities = 30/32 (93%) Strand = Plus / Plus Query: 300 ccgtgccgcaggtgaccctgccgccgatgccg 331 |||||||| ||||||| ||||||||||||||| Sbjct: 392 ccgtgccgaaggtgacgctgccgccgatgccg 423 Score = 44.1 bits (22), Expect = 0.50 Identities = 28/30 (93%) Strand = Plus / Plus Query: 427 cgtgcccaaggtgacgctgccgccgttgcc 456 ||||||||||||| ||||||||||| |||| Sbjct: 249 cgtgcccaaggtggcgctgccgccgatgcc 278 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 313 gaccctgccgccgatgccggc 333 ||||||||||||||||||||| Sbjct: 186 gaccctgccgccgatgccggc 206
>ref|XM_476609.1| Oryza sativa (japonica cultivar-group), mRNA Length = 858 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Plus Query: 427 cgtgcccaaggtgacgctgccgccgttgcc 456 ||||||||||||||||||||||||| |||| Sbjct: 562 cgtgcccaaggtgacgctgccgccgatgcc 591 Score = 48.1 bits (24), Expect = 0.032 Identities = 30/32 (93%) Strand = Plus / Plus Query: 427 cgtgcccaaggtgacgctgccgccgttgccgt 458 |||||| |||||||||||||||||| |||||| Sbjct: 520 cgtgccgaaggtgacgctgccgccgatgccgt 551 Score = 48.1 bits (24), Expect = 0.032 Identities = 30/32 (93%) Strand = Plus / Plus Query: 300 ccgtgccgcaggtgaccctgccgccgatgccg 331 |||||||| ||||||| ||||||||||||||| Sbjct: 519 ccgtgccgaaggtgacgctgccgccgatgccg 550
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Plus Query: 427 cgtgcccaaggtgacgctgccgccgttgcc 456 ||||||||||||||||||||||||| |||| Sbjct: 2214484 cgtgcccaaggtgacgctgccgccgatgcc 2214513 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Plus Query: 427 cgtgcccaaggtgacgctgccgccgttgcc 456 ||||||||||||||||||||||||| |||| Sbjct: 2212349 cgtgcccaaggtgacgctgccgccgatgcc 2212378 Score = 50.1 bits (25), Expect = 0.008 Identities = 28/29 (96%) Strand = Plus / Plus Query: 428 gtgcccaaggtgacgctgccgccgttgcc 456 |||||||||||||||||||||||| |||| Sbjct: 2209483 gtgcccaaggtgacgctgccgccgatgcc 2209511 Score = 48.1 bits (24), Expect = 0.032 Identities = 30/32 (93%) Strand = Plus / Plus Query: 427 cgtgcccaaggtgacgctgccgccgttgccgt 458 |||||| |||||||||||||||||| |||||| Sbjct: 2214442 cgtgccgaaggtgacgctgccgccgatgccgt 2214473 Score = 48.1 bits (24), Expect = 0.032 Identities = 30/32 (93%) Strand = Plus / Plus Query: 300 ccgtgccgcaggtgaccctgccgccgatgccg 331 |||||||| ||||||| ||||||||||||||| Sbjct: 2214441 ccgtgccgaaggtgacgctgccgccgatgccg 2214472 Score = 48.1 bits (24), Expect = 0.032 Identities = 30/32 (93%) Strand = Plus / Plus Query: 427 cgtgcccaaggtgacgctgccgccgttgccgt 458 |||||| |||||||||||||||||| |||||| Sbjct: 2212307 cgtgccgaaggtgacgctgccgccgatgccgt 2212338 Score = 48.1 bits (24), Expect = 0.032 Identities = 30/32 (93%) Strand = Plus / Plus Query: 300 ccgtgccgcaggtgaccctgccgccgatgccg 331 |||||||| ||||||| ||||||||||||||| Sbjct: 2212306 ccgtgccgaaggtgacgctgccgccgatgccg 2212337 Score = 48.1 bits (24), Expect = 0.032 Identities = 30/32 (93%) Strand = Plus / Plus Query: 427 cgtgcccaaggtgacgctgccgccgttgccgt 458 |||||| |||||||||||||||||| |||||| Sbjct: 2209440 cgtgccgaaggtgacgctgccgccgatgccgt 2209471 Score = 48.1 bits (24), Expect = 0.032 Identities = 30/32 (93%) Strand = Plus / Plus Query: 300 ccgtgccgcaggtgaccctgccgccgatgccg 331 |||||||| ||||||| ||||||||||||||| Sbjct: 2209439 ccgtgccgaaggtgacgctgccgccgatgccg 2209470 Score = 44.1 bits (22), Expect = 0.50 Identities = 28/30 (93%) Strand = Plus / Plus Query: 427 cgtgcccaaggtgacgctgccgccgttgcc 456 ||||||||||||| ||||||||||| |||| Sbjct: 2214298 cgtgcccaaggtggcgctgccgccgatgcc 2214327 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 313 gaccctgccgccgatgccggc 333 ||||||||||||||||||||| Sbjct: 2214235 gaccctgccgccgatgccggc 2214255 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 441 cgctgccgccgttgccgttg 460 |||||||||||||||||||| Sbjct: 10087527 cgctgccgccgttgccgttg 10087508
>dbj|AP004010.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1351_C05 Length = 112465 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Plus Query: 427 cgtgcccaaggtgacgctgccgccgttgcc 456 ||||||||||||||||||||||||| |||| Sbjct: 82386 cgtgcccaaggtgacgctgccgccgatgcc 82415 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Plus Query: 427 cgtgcccaaggtgacgctgccgccgttgcc 456 ||||||||||||||||||||||||| |||| Sbjct: 80251 cgtgcccaaggtgacgctgccgccgatgcc 80280 Score = 50.1 bits (25), Expect = 0.008 Identities = 28/29 (96%) Strand = Plus / Plus Query: 428 gtgcccaaggtgacgctgccgccgttgcc 456 |||||||||||||||||||||||| |||| Sbjct: 77385 gtgcccaaggtgacgctgccgccgatgcc 77413 Score = 48.1 bits (24), Expect = 0.032 Identities = 30/32 (93%) Strand = Plus / Plus Query: 427 cgtgcccaaggtgacgctgccgccgttgccgt 458 |||||| |||||||||||||||||| |||||| Sbjct: 82344 cgtgccgaaggtgacgctgccgccgatgccgt 82375 Score = 48.1 bits (24), Expect = 0.032 Identities = 30/32 (93%) Strand = Plus / Plus Query: 300 ccgtgccgcaggtgaccctgccgccgatgccg 331 |||||||| ||||||| ||||||||||||||| Sbjct: 82343 ccgtgccgaaggtgacgctgccgccgatgccg 82374 Score = 48.1 bits (24), Expect = 0.032 Identities = 30/32 (93%) Strand = Plus / Plus Query: 427 cgtgcccaaggtgacgctgccgccgttgccgt 458 |||||| |||||||||||||||||| |||||| Sbjct: 80209 cgtgccgaaggtgacgctgccgccgatgccgt 80240 Score = 48.1 bits (24), Expect = 0.032 Identities = 30/32 (93%) Strand = Plus / Plus Query: 300 ccgtgccgcaggtgaccctgccgccgatgccg 331 |||||||| ||||||| ||||||||||||||| Sbjct: 80208 ccgtgccgaaggtgacgctgccgccgatgccg 80239 Score = 48.1 bits (24), Expect = 0.032 Identities = 30/32 (93%) Strand = Plus / Plus Query: 427 cgtgcccaaggtgacgctgccgccgttgccgt 458 |||||| |||||||||||||||||| |||||| Sbjct: 77342 cgtgccgaaggtgacgctgccgccgatgccgt 77373 Score = 48.1 bits (24), Expect = 0.032 Identities = 30/32 (93%) Strand = Plus / Plus Query: 300 ccgtgccgcaggtgaccctgccgccgatgccg 331 |||||||| ||||||| ||||||||||||||| Sbjct: 77341 ccgtgccgaaggtgacgctgccgccgatgccg 77372 Score = 44.1 bits (22), Expect = 0.50 Identities = 28/30 (93%) Strand = Plus / Plus Query: 427 cgtgcccaaggtgacgctgccgccgttgcc 456 ||||||||||||| ||||||||||| |||| Sbjct: 82200 cgtgcccaaggtggcgctgccgccgatgcc 82229 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 313 gaccctgccgccgatgccggc 333 ||||||||||||||||||||| Sbjct: 82137 gaccctgccgccgatgccggc 82157
>dbj|AK108823.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-151-F04, full insert sequence Length = 858 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Plus Query: 427 cgtgcccaaggtgacgctgccgccgttgcc 456 ||||||||||||||||||||||||| |||| Sbjct: 562 cgtgcccaaggtgacgctgccgccgatgcc 591 Score = 48.1 bits (24), Expect = 0.032 Identities = 30/32 (93%) Strand = Plus / Plus Query: 427 cgtgcccaaggtgacgctgccgccgttgccgt 458 |||||| |||||||||||||||||| |||||| Sbjct: 520 cgtgccgaaggtgacgctgccgccgatgccgt 551 Score = 48.1 bits (24), Expect = 0.032 Identities = 30/32 (93%) Strand = Plus / Plus Query: 300 ccgtgccgcaggtgaccctgccgccgatgccg 331 |||||||| ||||||| ||||||||||||||| Sbjct: 519 ccgtgccgaaggtgacgctgccgccgatgccg 550
>ref|NM_186254.2| Oryza sativa (japonica cultivar-group), mRNA Length = 817 Score = 50.1 bits (25), Expect = 0.008 Identities = 28/29 (96%) Strand = Plus / Plus Query: 428 gtgcccaaggtgacgctgccgccgttgcc 456 |||||||||||||||||||||||| |||| Sbjct: 508 gtgcccaaggtgacgctgccgccgatgcc 536 Score = 48.1 bits (24), Expect = 0.032 Identities = 30/32 (93%) Strand = Plus / Plus Query: 427 cgtgcccaaggtgacgctgccgccgttgccgt 458 |||||| |||||||||||||||||| |||||| Sbjct: 465 cgtgccgaaggtgacgctgccgccgatgccgt 496 Score = 48.1 bits (24), Expect = 0.032 Identities = 30/32 (93%) Strand = Plus / Plus Query: 300 ccgtgccgcaggtgaccctgccgccgatgccg 331 |||||||| ||||||| ||||||||||||||| Sbjct: 464 ccgtgccgaaggtgacgctgccgccgatgccg 495
>dbj|AK108897.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-152-F01, full insert sequence Length = 817 Score = 50.1 bits (25), Expect = 0.008 Identities = 28/29 (96%) Strand = Plus / Plus Query: 428 gtgcccaaggtgacgctgccgccgttgcc 456 |||||||||||||||||||||||| |||| Sbjct: 508 gtgcccaaggtgacgctgccgccgatgcc 536 Score = 48.1 bits (24), Expect = 0.032 Identities = 30/32 (93%) Strand = Plus / Plus Query: 427 cgtgcccaaggtgacgctgccgccgttgccgt 458 |||||| |||||||||||||||||| |||||| Sbjct: 465 cgtgccgaaggtgacgctgccgccgatgccgt 496 Score = 48.1 bits (24), Expect = 0.032 Identities = 30/32 (93%) Strand = Plus / Plus Query: 300 ccgtgccgcaggtgaccctgccgccgatgccg 331 |||||||| ||||||| ||||||||||||||| Sbjct: 464 ccgtgccgaaggtgacgctgccgccgatgccg 495
>emb|BX842583.1| Mycobacterium tuberculosis H37Rv complete genome; segment 12/13 Length = 349606 Score = 44.1 bits (22), Expect = 0.50 Identities = 22/22 (100%) Strand = Plus / Minus Query: 441 cgctgccgccgttgccgttggt 462 |||||||||||||||||||||| Sbjct: 132782 cgctgccgccgttgccgttggt 132761 Score = 44.1 bits (22), Expect = 0.50 Identities = 22/22 (100%) Strand = Plus / Minus Query: 441 cgctgccgccgttgccgttggt 462 |||||||||||||||||||||| Sbjct: 132182 cgctgccgccgttgccgttggt 132161
>emb|BX248346.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 13/14 Length = 316050 Score = 44.1 bits (22), Expect = 0.50 Identities = 22/22 (100%) Strand = Plus / Minus Query: 441 cgctgccgccgttgccgttggt 462 |||||||||||||||||||||| Sbjct: 142174 cgctgccgccgttgccgttggt 142153
>gb|U18082.1|SPU18082 Streptomyces peucetius daunorubicin and doxorubicin resistance determinant (drrAB) gene, partial cds, and aklavinone C-11 hydroxylase (dnrF) gene, complete cds Length = 2201 Score = 44.1 bits (22), Expect = 0.50 Identities = 22/22 (100%) Strand = Plus / Minus Query: 349 ggcggtgttgccgcccatgccc 370 |||||||||||||||||||||| Sbjct: 1323 ggcggtgttgccgcccatgccc 1302
>gb|U09844.1|SPU09844 Streptomyces peucetius caesius aklavinone C-11 hydroxylase (dnrF) gene, complete cds Length = 2200 Score = 44.1 bits (22), Expect = 0.50 Identities = 22/22 (100%) Strand = Plus / Minus Query: 349 ggcggtgttgccgcccatgccc 370 |||||||||||||||||||||| Sbjct: 1322 ggcggtgttgccgcccatgccc 1301
>ref|XM_468118.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1920 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 400 gacgatggcgccgatgcccgc 420 ||||||||||||||||||||| Sbjct: 115 gacgatggcgccgatgcccgc 135
>ref|NM_195286.1| Oryza sativa (japonica cultivar-group) putative proline-rich cell wall protein (OSJNBa0040E17.25), mRNA Length = 657 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 315 ccctgccgccgatgccggccatcgt 339 ||||||||||||| ||||||||||| Sbjct: 314 ccctgccgccgatcccggccatcgt 338 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 319 gccgccgatgccggccatcgtcgt 342 ||||||| |||||||||||||||| Sbjct: 246 gccgccgctgccggccatcgtcgt 269
>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome Length = 7074893 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 362 cccatgcccaaggtcaccctc 382 ||||||||||||||||||||| Sbjct: 3314500 cccatgcccaaggtcaccctc 3314480
>gb|AC097278.6| Oryza sativa chromosome 10 BAC OSJNBa0040E17 genomic sequence, complete sequence Length = 151673 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 315 ccctgccgccgatgccggccatcgt 339 ||||||||||||| ||||||||||| Sbjct: 109034 ccctgccgccgatcccggccatcgt 109058 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 319 gccgccgatgccggccatcgtcgt 342 ||||||| |||||||||||||||| Sbjct: 108966 gccgccgctgccggccatcgtcgt 108989
>gb|L77912.1|MZEPAL Zea mays phenylalanine ammonia-lyase mRNA, complete cds Length = 2488 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 401 acgatggcgccgatgcccgccattg 425 |||||||||||| |||||||||||| Sbjct: 136 acgatggcgccgttgcccgccattg 112
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 315 ccctgccgccgatgccggccatcgt 339 ||||||||||||| ||||||||||| Sbjct: 5957279 ccctgccgccgatcccggccatcgt 5957255 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 491 gcggcgccgccgccatcagc 510 |||||||||||||||||||| Sbjct: 19013007 gcggcgccgccgccatcagc 19012988 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 319 gccgccgatgccggccatcgtcgt 342 ||||||| |||||||||||||||| Sbjct: 5957347 gccgccgctgccggccatcgtcgt 5957324
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 445 gccgccgttgccgttggtccc 465 ||||||||||||||||||||| Sbjct: 20860611 gccgccgttgccgttggtccc 20860591
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 400 gacgatggcgccgatgcccgc 420 ||||||||||||||||||||| Sbjct: 33156663 gacgatggcgccgatgcccgc 33156683
>dbj|AP003613.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0458E11 Length = 148798 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 445 gccgccgttgccgttggtccc 465 ||||||||||||||||||||| Sbjct: 115286 gccgccgttgccgttggtccc 115266
>dbj|AP004257.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1369_G08 Length = 104190 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 400 gacgatggcgccgatgcccgc 420 ||||||||||||||||||||| Sbjct: 72323 gacgatggcgccgatgcccgc 72343
>gb|AF065769.1|AF065769 Stealth virus 1 clone 3B417 T3 Length = 795 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 441 cgctgccgccgttgccgttgg 461 ||||||||||||||||||||| Sbjct: 517 cgctgccgccgttgccgttgg 497
>gb|AY103647.1| Zea mays PCO142084 mRNA sequence Length = 2598 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 401 acgatggcgccgatgcccgccattg 425 |||||||||||| |||||||||||| Sbjct: 132 acgatggcgccgttgcccgccattg 108
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 315 ccctgccgccgatgccggccatcgt 339 ||||||||||||| ||||||||||| Sbjct: 5958465 ccctgccgccgatcccggccatcgt 5958441 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 491 gcggcgccgccgccatcagc 510 |||||||||||||||||||| Sbjct: 19024261 gcggcgccgccgccatcagc 19024242 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 319 gccgccgatgccggccatcgtcgt 342 ||||||| |||||||||||||||| Sbjct: 5958533 gccgccgctgccggccatcgtcgt 5958510
>gb|U27613.1|SVU27613 Stealth virus 1 clone 3B310T3 Length = 672 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 441 cgctgccgccgttgccgttgg 461 ||||||||||||||||||||| Sbjct: 518 cgctgccgccgttgccgttgg 498
>gb|CP000002.2| Bacillus licheniformis ATCC 14580, complete genome Length = 4222334 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 310 ggtgaccctgccgccgatgccggc 333 ||||| |||||||||||||||||| Sbjct: 426631 ggtgatcctgccgccgatgccggc 426654
>ref|XM_514985.1| PREDICTED: Pan troglodytes armadillo repeat protein (LOC458656), mRNA Length = 1633 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 156 gcagcacgtgtgacgccgcc 175 |||||||||||||||||||| Sbjct: 1229 gcagcacgtgtgacgccgcc 1210
>ref|NM_197283.1| Oryza sativa (japonica cultivar-group) putative stress-responsive protein (OSJNBb0091N21.27), mRNA Length = 890 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 491 gcggcgccgccgccatcagc 510 |||||||||||||||||||| Sbjct: 133 gcggcgccgccgccatcagc 152
>gb|AC139170.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0058P12, complete sequence Length = 173073 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 134 gcgtgcgcgctcctcctcgccggc 157 |||| ||||||||||||||||||| Sbjct: 105570 gcgtccgcgctcctcctcgccggc 105547
>gb|AE017333.1| Bacillus licheniformis DSM 13, complete genome Length = 4222645 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 310 ggtgaccctgccgccgatgccggc 333 ||||| |||||||||||||||||| Sbjct: 426443 ggtgatcctgccgccgatgccggc 426466
>gb|AC133003.3| Oryza sativa chromosome 3 BAC OSJNBa0010D22 genomic sequence, complete sequence Length = 190055 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 138 gcgcgctcctcctcgccggc 157 |||||||||||||||||||| Sbjct: 42979 gcgcgctcctcctcgccggc 42998
>gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome Length = 3814139 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 301 cgtgccgcaggtgaccctgccgcc 324 |||||||| ||||||||||||||| Sbjct: 3185490 cgtgccgctggtgaccctgccgcc 3185513
>gb|CP000359.1| Deinococcus geothermalis DSM 11300, complete genome Length = 2467205 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 180 acctggccgacacgacaccggagg 203 |||||||||||||||| ||||||| Sbjct: 2450445 acctggccgacacgacgccggagg 2450468
>gb|AC093693.4| Homo sapiens BAC clone RP11-761E14 from 7, complete sequence Length = 47886 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 374 gtcaccctccccacagtgcc 393 |||||||||||||||||||| Sbjct: 22086 gtcaccctccccacagtgcc 22105
>gb|AC145985.2| Pan troglodytes BAC clone RP43-17I24 from 7, complete sequence Length = 162953 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 374 gtcaccctccccacagtgcc 393 |||||||||||||||||||| Sbjct: 74356 gtcaccctccccacagtgcc 74337
>ref|NM_001670.1| Homo sapiens armadillo repeat gene deletes in velocardiofacial syndrome (ARVCF), mRNA Length = 4031 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 156 gcagcacgtgtgacgccgcc 175 |||||||||||||||||||| Sbjct: 2750 gcagcacgtgtgacgccgcc 2731
>emb|AL445310.9| Human DNA sequence from clone RP11-61P11 on chromosome 9, complete sequence Length = 175993 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 223 caccgtacctggcctgccta 242 |||||||||||||||||||| Sbjct: 84370 caccgtacctggcctgccta 84351
>emb|BX029397.1|CNS08UUH Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 5-PRIME end of clone FK0AAA43DG01 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 467 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 494 gcgccgccgccatcagcgta 513 |||||||||||||||||||| Sbjct: 440 gcgccgccgccatcagcgta 421
>emb|X62276.1|AVNANH A.viscosus nanH gene for sialidase Length = 4512 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 441 cgctgccgccgttgccgttg 460 |||||||||||||||||||| Sbjct: 1802 cgctgccgccgttgccgttg 1783
>emb|BX572596.1| Rhodopseudomonas palustris CGA009 complete genome; segment 4/16 Length = 348942 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 432 ccaaggtgacgctgccgccg 451 |||||||||||||||||||| Sbjct: 1032 ccaaggtgacgctgccgccg 1013
>gb|AC091122.10| Oryza sativa chromosome 10 BAC OSJNBb0091N21 genomic sequence, complete sequence Length = 151991 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 491 gcggcgccgccgccatcagc 510 |||||||||||||||||||| Sbjct: 65657 gcggcgccgccgccatcagc 65676
>dbj|AK092664.1| Homo sapiens cDNA FLJ35345 fis, clone PROST2016351, moderately similar to P120 PROTEIN Length = 2344 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 156 gcagcacgtgtgacgccgcc 175 |||||||||||||||||||| Sbjct: 1196 gcagcacgtgtgacgccgcc 1177
>gb|AF324972.1|AF324972 Drosophila melanica dopa decarboxylase (Ddc) gene, exon 4 and partial cds Length = 1134 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 423 ttgtcgtgcccaaggtgacg 442 |||||||||||||||||||| Sbjct: 538 ttgtcgtgcccaaggtgacg 519
>emb|BX649559.12| Zebrafish DNA sequence from clone DKEY-33C3 in linkage group 3, complete sequence Length = 143056 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 387 cagtgccgcaggtgacgatg 406 |||||||||||||||||||| Sbjct: 3030 cagtgccgcaggtgacgatg 3049
>gb|AC005663.2| Homo sapiens chromosome 22 clone p888c9 map 22q11, complete sequence Length = 103122 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 156 gcagcacgtgtgacgccgcc 175 |||||||||||||||||||| Sbjct: 26815 gcagcacgtgtgacgccgcc 26834
>gb|AC000074.2| Homo sapiens Chromosome 22q11.2 Cosmid Clone 20b In DGCR Region, complete sequence Length = 44450 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 156 gcagcacgtgtgacgccgcc 175 |||||||||||||||||||| Sbjct: 10757 gcagcacgtgtgacgccgcc 10776
>gb|BC053229.1| Danio rerio actin related protein 2/3 complex, subunit 1B, mRNA (cDNA clone MGC:64056 IMAGE:6793975), complete cds Length = 1594 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 387 cagtgccgcaggtgacgatg 406 |||||||||||||||||||| Sbjct: 333 cagtgccgcaggtgacgatg 314
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 444 tgccgccgttgccgttggtc 463 |||||||||||||||||||| Sbjct: 10742158 tgccgccgttgccgttggtc 10742139
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 134 gcgtgcgcgctcctcctcgccggc 157 |||| ||||||||||||||||||| Sbjct: 4889323 gcgtccgcgctcctcctcgccggc 4889346
>gb|AF465237.2| Serratia marcescens YgfF (ygfF), response regulator protein RssB (rssB), and sensor protein RssA (rssA) genes, complete cds Length = 3451 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 172 cgcccgcaacctggccgaca 191 |||||||||||||||||||| Sbjct: 3236 cgcccgcaacctggccgaca 3255
>ref|NM_213156.1| Danio rerio actin related protein 2/3 complex, subunit 1B (arpc1b), mRNA Length = 1594 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 387 cagtgccgcaggtgacgatg 406 |||||||||||||||||||| Sbjct: 333 cagtgccgcaggtgacgatg 314
>dbj|AP005172.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBb0002J01 Length = 130152 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 441 cgctgccgccgttgccgttg 460 |||||||||||||||||||| Sbjct: 60203 cgctgccgccgttgccgttg 60184
>dbj|AK105133.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-101-H11, full insert sequence Length = 642 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 138 gcgcgctcctcctcgccggc 157 |||||||||||||||||||| Sbjct: 213 gcgcgctcctcctcgccggc 232
>dbj|AK070130.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023046C06, full insert sequence Length = 3171 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 134 gcgtgcgcgctcctcctcgccggc 157 |||| ||||||||||||||||||| Sbjct: 238 gcgtccgcgctcctcctcgccggc 261
>dbj|AK060639.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-027-D09, full insert sequence Length = 1229 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 491 gcggcgccgccgccatcagc 510 |||||||||||||||||||| Sbjct: 146 gcggcgccgccgccatcagc 165
>gb|AC006239.5|AC006239 Homo sapiens chromosome 9, clone hRPK.467_F_21, complete sequence Length = 195032 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 223 caccgtacctggcctgccta 242 |||||||||||||||||||| Sbjct: 152063 caccgtacctggcctgccta 152082
>gb|U51269.1|HSU51269 Human armadillo repeat protein mRNA, complete cds Length = 4031 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 156 gcagcacgtgtgacgccgcc 175 |||||||||||||||||||| Sbjct: 2750 gcagcacgtgtgacgccgcc 2731
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 134 gcgtgcgcgctcctcctcgccggc 157 |||| ||||||||||||||||||| Sbjct: 4908107 gcgtccgcgctcctcctcgccggc 4908130
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 444 tgccgccgttgccgttggtc 463 |||||||||||||||||||| Sbjct: 10741857 tgccgccgttgccgttggtc 10741838
>emb|AL831795.4|CNS08CA8 Oryza sativa chromosome 12, . BAC OSJNBb0085N21 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 135105 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 444 tgccgccgttgccgttggtc 463 |||||||||||||||||||| Sbjct: 107005 tgccgccgttgccgttggtc 106986
>emb|AL731876.3|CNS08C8G Oryza sativa chromosome 12, . BAC OJ1194_E11 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 119388 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 444 tgccgccgttgccgttggtc 463 |||||||||||||||||||| Sbjct: 8507 tgccgccgttgccgttggtc 8488
>gb|L06898.1|ACYSIALID Actinomyces viscosus sialidase (nanH) gene, complete cds Length = 4284 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 441 cgctgccgccgttgccgttg 460 |||||||||||||||||||| Sbjct: 1393 cgctgccgccgttgccgttg 1374 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,432,010 Number of Sequences: 3902068 Number of extensions: 3432010 Number of successful extensions: 78870 Number of sequences better than 10.0: 65 Number of HSP's better than 10.0 without gapping: 70 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 77240 Number of HSP's gapped (non-prelim): 1626 length of query: 572 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 549 effective length of database: 17,143,297,704 effective search space: 9411670439496 effective search space used: 9411670439496 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)