>SSXT_HUMAN (Q15532) SSXT protein (Synovial sarcoma, translocated to X|
           chromosome) (SYT protein)
          Length = 418

 Score = 64.3 bits (155), Expect = 2e-10
 Identities = 38/87 (43%), Positives = 48/87 (55%), Gaps = 2/87 (2%)
 Frame = +3

Query: 159 IQKYLDENKQLILAILENQNLGKLAECAQYQAQLQKNLLYLAAIADTQPQTSVSRPQMAP 338
           IQK LD+N  LI  I+++QN GK +EC+QYQ  L  NL+YLA IAD+        P  AP
Sbjct: 21  IQKMLDDNNHLIQCIMDSQNKGKTSECSQYQQMLHTNLVYLATIADSNQNMQSLLP--AP 78

Query: 339 PAAS--PGAGHYMSQVPMFPPRTPLTP 413
           P  +   G G      P  PPR+   P
Sbjct: 79  PTQNMPMGPGGMNQSGPPPPPRSHNMP 105

>SSXT_MOUSE (Q62280) SSXT protein (SYT protein) (Synovial sarcoma-associated|
           Ss18-alpha)
          Length = 418

 Score = 63.5 bits (153), Expect = 4e-10
 Identities = 36/85 (42%), Positives = 43/85 (50%)
 Frame = +3

Query: 159 IQKYLDENKQLILAILENQNLGKLAECAQYQAQLQKNLLYLAAIADTQPQTSVSRPQMAP 338
           IQK LDEN  LI  I++ QN GK +EC+QYQ  L  NL+YLA IAD+        P    
Sbjct: 21  IQKMLDENNHLIQCIMDYQNKGKASECSQYQQILHTNLVYLATIADSNQNMQSLLPAPPT 80

Query: 339 PAASPGAGHYMSQVPMFPPRTPLTP 413
                G G      P  PPR+   P
Sbjct: 81  QTMPMGPGGMSQSGPPPPPRSHNMP 105

>S18L1_HUMAN (O75177) SS18-like protein 1 (SYT homolog 1)|
          Length = 396

 Score = 62.8 bits (151), Expect = 7e-10
 Identities = 35/73 (47%), Positives = 43/73 (58%)
 Frame = +3

Query: 144 LSTEQIQKYLDENKQLILAILENQNLGKLAECAQYQAQLQKNLLYLAAIADTQPQTSVSR 323
           ++ + IQK LDEN  LI  ILE Q+ GK AEC QYQ  L +NL+YLA IAD+        
Sbjct: 16  VTQQTIQKMLDENHHLIQCILEYQSKGKTAECTQYQQILHRNLVYLATIADSNQNMQSLL 75

Query: 324 PQMAPPAASPGAG 362
           P  APP  +   G
Sbjct: 76  P--APPTQNMNLG 86

>S18L2_HUMAN (Q9UHA2) SS18-like protein 2 (SYT homolog 2)|
          Length = 77

 Score = 60.5 bits (145), Expect = 3e-09
 Identities = 32/60 (53%), Positives = 41/60 (68%)
 Frame = +3

Query: 144 LSTEQIQKYLDENKQLILAILENQNLGKLAECAQYQAQLQKNLLYLAAIADTQPQTSVSR 323
           ++ E IQ+ L+EN QLI  I+E QN G+  EC QYQ  L +NL+YLA IAD  P TS S+
Sbjct: 16  VNQETIQRLLEENDQLIRCIVEYQNKGRGNECVQYQHVLHRNLIYLATIADASP-TSTSK 74

>S18L2_MOUSE (Q9D174) SS18-like protein 2|
          Length = 77

 Score = 57.8 bits (138), Expect = 2e-08
 Identities = 28/51 (54%), Positives = 36/51 (70%)
 Frame = +3

Query: 144 LSTEQIQKYLDENKQLILAILENQNLGKLAECAQYQAQLQKNLLYLAAIAD 296
           ++ E IQ+ L+EN QLI  I+E QN G+  EC QYQ  L +NL+YLA IAD
Sbjct: 16  VNQETIQRLLEENDQLIRCIVEYQNKGRANECVQYQHVLHRNLIYLATIAD 66

>SC24B_ARATH (Q9M081) Putative protein transport protein Sec24-like At4g32640|
          Length = 1069

 Score = 33.5 bits (75), Expect = 0.44
 Identities = 26/106 (24%), Positives = 41/106 (38%), Gaps = 10/106 (9%)
 Frame = +3

Query: 285 AIADTQPQTSVSRPQMAPPAASPGAGH---YMSQVPMFPPRTPLTPXXXXXXXXXXXXXX 455
           +++   P T  + P M PPA  PGA H    +S +P  PP   + P              
Sbjct: 243 SLSGNPPLTPFTAPSMPPPATFPGAPHGRPAVSGLPYGPPSAQVAPPLGFPGQMQPPRYG 302

Query: 456 XXPFAGQ-------MVARPGAVNGIPQAPQVEQPAYAAGGASSEPS 572
             P   Q        + +PGA   +P   +++       G+SS P+
Sbjct: 303 MGPLPNQSMTNIPTAMGQPGAT--VPGPSRIDPNQIPRPGSSSSPT 346

>EPABA_XENLA (Q98SP8) Embryonic polyadenylate-binding protein-A (Embryonic|
           poly(A) binding protein-A) (ePABP-A) (ePAB-A) (XePABP-A)
          Length = 629

 Score = 33.1 bits (74), Expect = 0.58
 Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 5/93 (5%)
 Frame = +3

Query: 144 LSTEQIQKYLDENKQLILAILENQNLGKLAECAQYQAQL-----QKNLLYLAAIADTQPQ 308
           +ST+ +   L + K+   AIL NQ + +LA        L     Q    +L+A+     +
Sbjct: 358 VSTKPLYVALAQRKEERKAILTNQYMQRLATMRAMPGPLLGSFQQPANYFLSAMPQPPNR 417

Query: 309 TSVSRPQMAPPAASPGAGHYMSQVPMFPPRTPL 407
           T  S   +AP   +P    + S+ P + P TPL
Sbjct: 418 TFYSPNPVAPVRPAPQWASHQSRPPQYQPPTPL 450

>WSP1_SCHPO (O36027) Wiskott-Aldrich syndrome homolog protein 1|
          Length = 574

 Score = 32.3 bits (72), Expect = 0.98
 Identities = 25/88 (28%), Positives = 27/88 (30%)
 Frame = +3

Query: 297 TQPQTSVSRPQMAPPAASPGAGHYMSQVPMFPPRTPLTPXXXXXXXXXXXXXXXXPFAGQ 476
           T P    S P   PP+A P         P  PP  P+ P                P    
Sbjct: 419 TPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAP----------------PLPAG 462

Query: 477 MVARPGAVNGIPQAPQVEQPAYAAGGAS 560
           M A P      P  P    PA AA  AS
Sbjct: 463 MPAAPPLPPAAPAPPPAPAPAPAAPVAS 490

>ICP34_HHV1F (P08353) Infected cell protein ICP34.5 (Neurovirulence factor|
           ICP34.5)
          Length = 263

 Score = 31.6 bits (70), Expect = 1.7
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +3

Query: 294 DTQPQTSVSRPQMAPPAASPGAGHYMSQVPMFPPRTP 404
           + +P  +  RP+  PP A PG G   S  P  P R P
Sbjct: 93  EARPTAAAPRPRSPPPGAGPGGGANPSHPPSRPFRLP 129

>ICP34_HHV1N (P37319) Infected cell protein ICP34.5 (Neurovirulence factor|
           ICP34.5)
          Length = 245

 Score = 31.6 bits (70), Expect = 1.7
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +3

Query: 294 DTQPQTSVSRPQMAPPAASPGAGHYMSQVPMFPPRTP 404
           + +P  +  RP+  PP A PG G   S  P  P R P
Sbjct: 87  EARPTAAAPRPRSPPPGAGPGGGANPSHPPSRPFRLP 123

>MYST3_MOUSE (Q8BZ21) Histone acetyltransferase MYST3 (EC 2.3.1.48) (EC 2.3.1.-)|
            (MYST protein 3) (MOZ, YBF2/SAS3, SAS2 and TIP60 protein
            3) (Monocytic leukemia zinc finger protein) (Monocytic
            leukemia zinc finger homolog)
          Length = 2003

 Score = 31.6 bits (70), Expect = 1.7
 Identities = 21/50 (42%), Positives = 25/50 (50%), Gaps = 11/50 (22%)
 Frame = -3

Query: 327  EDGLQRS--VAEYQQSQPNTKDSSEAELDTEHIPP---------TFPGSD 211
            E G+Q S   A  Q S+ NTKD  EAE D+E   P         T PGS+
Sbjct: 1338 EPGIQGSFLAANMQDSRENTKDKDEAEPDSEEDQPSHEASVVSETMPGSE 1387

>ICP34_HHV1D (P37318) Infected cell protein ICP34.5 (Neurovirulence factor|
           ICP34.5)
          Length = 252

 Score = 31.2 bits (69), Expect = 2.2
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +3

Query: 294 DTQPQTSVSRPQMAPPAASPGAGHYMSQVPMFPPRTP 404
           + +P  +  RP+  PP A PG G   S  P  P R P
Sbjct: 94  EARPTAAAPRPRSPPPGAGPGGGADPSHPPSRPFRLP 130

>DYSF_HUMAN (O75923) Dysferlin (Dystrophy-associated fer-1-like protein)|
           (Fer-1-like protein 1)
          Length = 2080

 Score = 31.2 bits (69), Expect = 2.2
 Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 8/89 (8%)
 Frame = +3

Query: 171 LDENKQLILAILENQNLGKLAECAQYQAQLQKNLL-------YLAAIADTQPQ-TSVSRP 326
           LD+  +L + + +++ +G+     + +  L++ L        + A + DT+ Q T  S  
Sbjct: 59  LDQGSELHVVVKDHETMGRNRFLGEAKVPLREVLATPSLSASFNAPLLDTKKQPTGASLV 118

Query: 327 QMAPPAASPGAGHYMSQVPMFPPRTPLTP 413
                   PGA      VP+FPP TPL P
Sbjct: 119 LQVSYTPLPGA------VPLFPPPTPLEP 141

>YG3D_YEAST (P53281) Protein YGR136W|
          Length = 241

 Score = 30.8 bits (68), Expect = 2.9
 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
 Frame = +3

Query: 291 ADTQPQTSVSRPQMAPPAASPGAGHYMSQ---VPMFPP 395
           A+    ++VSRP + PP+  P A  Y SQ    P  PP
Sbjct: 120 AEAASSSTVSRPSVPPPSYEPAASQYPSQQVSAPYAPP 157

>CSKI2_HUMAN (Q8WXE0) Caskin-2|
          Length = 1202

 Score = 30.0 bits (66), Expect = 4.9
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +3

Query: 303 PQTSVSRPQMAPPAASPGAGHYMSQVPMFPPRTP 404
           PQ S S P   PP  +P A  Y++  P  PP  P
Sbjct: 759 PQGSPSSPAPGPPPGAPWAFSYLAGPPATPPDPP 792

>DMD_CAEEL (Q9TW65) Dystrophin-1|
          Length = 3674

 Score = 30.0 bits (66), Expect = 4.9
 Identities = 19/59 (32%), Positives = 24/59 (40%)
 Frame = +3

Query: 189 LILAILENQNLGKLAECAQYQAQLQKNLLYLAAIADTQPQTSVSRPQMAPPAASPGAGH 365
           L LA++    +    E  Q Q Q    LL    +  +QP TS S     PP   P A H
Sbjct: 229 LYLAMISTSKIETELEAQQIQQQKVAALLASHKMLSSQPSTSSSSALQIPPQTPPTAHH 287

>PAT1_YEAST (P25644) Topoisomerase II-associated protein PAT1|
          Length = 796

 Score = 29.6 bits (65), Expect = 6.4
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +3

Query: 300 QPQTSVSRP-QMAPPAASPGAGHYMSQVPMFPPRTPL 407
           QP +    P Q APP   PG    M+Q+PM P + P+
Sbjct: 182 QPASGQPGPSQFAPPPPPPGVNVNMNQMPMGPVQVPV 218

>APLP_LOCMI (Q9U943) Apolipophorins precursor [Contains: Apolipophorin-2|
           (Apolipophorin II) (apoLp-2); Apolipophorin-1
           (Apolipophorin I) (apoLp-1)]
          Length = 3380

 Score = 29.6 bits (65), Expect = 6.4
 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 6/57 (10%)
 Frame = -3

Query: 378 PVTCNALPLGMQQVVPSEDGLQRSVAEYQQS------QPNTKDSSEAELDTEHIPPT 226
           PV  N     + + + SEDG+ +S    +Q+       PNTK S+ +E+D   I PT
Sbjct: 111 PVLANFKGSSINKQLCSEDGVNQSSLNIKQAILSLLQTPNTKSSTVSEVDVFGICPT 167

>ID4_MOUSE (P41139) DNA-binding protein inhibitor ID-4 (Inhibitor of DNA|
           binding 4)
          Length = 161

 Score = 29.3 bits (64), Expect = 8.3
 Identities = 24/76 (31%), Positives = 34/76 (44%)
 Frame = +3

Query: 183 KQLILAILENQNLGKLAECAQYQAQLQKNLLYLAAIADTQPQTSVSRPQMAPPAASPGAG 362
           ++L+  I  N+ + K+ E  Q+       +L L    +T P      P  APP    GA 
Sbjct: 76  RRLVPTIPPNKKVSKV-EILQHVIDY---ILDLQLALETHPALLRQPPPPAPPLHPAGA- 130

Query: 363 HYMSQVPMFPPRTPLT 410
                 P+ PPRTPLT
Sbjct: 131 -----CPVAPPRTPLT 141

>TPP2_HUMAN (P29144) Tripeptidyl-peptidase 2 (EC 3.4.14.10)|
           (Tripeptidyl-peptidase II) (TPP-II) (Tripeptidyl
           aminopeptidase)
          Length = 1248

 Score = 29.3 bits (64), Expect = 8.3
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -3

Query: 387 TLAPVTCNALPLGMQQVVPSEDGLQRSVAEYQQSQPNT 274
           TL PV+    PLG + V+P+   L   V  Y   QP +
Sbjct: 795 TLRPVSAKTKPLGSRDVLPNNRQLYEMVLTYNFHQPKS 832

>EP300_HUMAN (Q09472) E1A-associated protein p300 (EC 2.3.1.48)|
          Length = 2414

 Score = 29.3 bits (64), Expect = 8.3
 Identities = 30/107 (28%), Positives = 35/107 (32%), Gaps = 14/107 (13%)
 Frame = +3

Query: 291  ADTQPQTSVSRPQMAPPAASPGAGHYMSQVPMFPPRTPLTPXXXXXXXXXXXXXXXXPFA 470
            A   P T++  P   PPA  PG     SQ    PPR   TP                P A
Sbjct: 851  AQQPPATTIPAPVPTPPAMPPGP---QSQALHPPPRQTPTPPTTQLPQQVQPSLPAAPSA 907

Query: 471  GQMVARP------GAVNGIPQAP--------QVEQPAYAAGGASSEP 569
             Q   +P       A    P AP         + QPA +  G  S P
Sbjct: 908  DQPQQQPRSQQSTAASVPTPNAPLLPPQPATPLSQPAVSIEGQVSNP 954

>BCCP_ARATH (Q42533) Biotin carboxyl carrier protein of acetyl-CoA carboxylase,|
           chloroplast precursor (BCCP)
          Length = 280

 Score = 29.3 bits (64), Expect = 8.3
 Identities = 16/38 (42%), Positives = 17/38 (44%)
 Frame = +3

Query: 300 QPQTSVSRPQMAPPAASPGAGHYMSQVPMFPPRTPLTP 413
           QP       QMAPPAA   A    S     PP +P TP
Sbjct: 161 QPNQPSYAQQMAPPAAPAAAAPAPSTPASLPPPSPPTP 198

>VGLG_HHV2H (P13290) Glycoprotein G|
          Length = 699

 Score = 29.3 bits (64), Expect = 8.3
 Identities = 26/98 (26%), Positives = 33/98 (33%), Gaps = 5/98 (5%)
 Frame = +3

Query: 285 AIADTQPQTSV-SRPQMAPPAASPGAGHYMSQVPMFPPRTPLTPXXXXXXXXXXXXXXXX 461
           A+A      SV S P  A  AA+PGAGH  +         P TP                
Sbjct: 408 AVASPPATASVESSPLPAAAAATPGAGHTNTSSASAAKTPPTTPAPTTPPPTSTHATPRP 467

Query: 462 PFAGQMVARPGAVN----GIPQAPQVEQPAYAAGGASS 563
              G     PG       G   AP  + P  A+  A++
Sbjct: 468 TTPGPQTTPPGPATPGPVGASAAPTADSPLTASPPATA 505

>TBB_PLESA (Q92268) Tubulin beta chain (Beta tubulin)|
          Length = 446

 Score = 29.3 bits (64), Expect = 8.3
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = -3

Query: 330 SEDGLQRSVAEYQQSQPNTKDSSEAELDTE 241
           +E  +Q  VAEYQQ Q  T D  E E + E
Sbjct: 411 AESNMQDLVAEYQQYQDATADEEEGEYEEE 440

>HCFC1_HUMAN (P51610) Host cell factor (HCF) (HCF-1) (C1 factor) (VP16 accessory|
           protein) (VCAF) (CFF) [Contains: HCF N-terminal chain 1;
           HCF N-terminal chain 2; HCF N-terminal chain 3; HCF
           N-terminal chain 4; HCF N-terminal chain 5; HCF
           N-terminal chain
          Length = 2035

 Score = 29.3 bits (64), Expect = 8.3
 Identities = 17/52 (32%), Positives = 26/52 (50%)
 Frame = -3

Query: 381 APVTCNALPLGMQQVVPSEDGLQRSVAEYQQSQPNTKDSSEAELDTEHIPPT 226
           APVT  +LP G++ VVP++   Q +V             + A   T+ IPP+
Sbjct: 512 APVTVTSLPAGVRMVVPTQSA-QGTVIGSSPQMSGMAALAAAAAATQKIPPS 562

>RL1_HHV11 (O12396) Neurovirulence factor RL1 (Neurovirulence factor ICP34.5)|
          Length = 248

 Score = 29.3 bits (64), Expect = 8.3
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = +3

Query: 294 DTQPQTSVSRPQMAPPAASPGAGHYMSQVPMFPPRTP 404
           + +P  +  RP+  PP   PG G   S  P  P R P
Sbjct: 93  EARPTAAAPRPRPPPPGVGPGGGADPSHPPSRPFRLP 129

>ICP34_HHV11 (P36313) Infected cell protein ICP34.5 (Neurovirulence factor|
           ICP34.5)
          Length = 248

 Score = 29.3 bits (64), Expect = 8.3
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = +3

Query: 294 DTQPQTSVSRPQMAPPAASPGAGHYMSQVPMFPPRTP 404
           + +P  +  RP+  PP   PG G   S  P  P R P
Sbjct: 93  EARPTAAAPRPRPPPPGVGPGGGADPSHPPSRPFRLP 129


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,306,582
Number of Sequences: 219361
Number of extensions: 1152532
Number of successful extensions: 4803
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 4411
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4779
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4815021120
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)