ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bart54h06 |
|---|---|
| Clone Library Name | barley_pub |
>PPA1_LYCES (P27061) Acid phosphatase 1 precursor (EC 3.1.3.2) (Apase-1(1))| Length = 255 Score = 87.4 bits (215), Expect = 1e-17 Identities = 37/83 (44%), Positives = 53/83 (63%) Frame = +3 Query: 132 CDSWVLGVEAHNVRDWKTVPASCEGYVGHYMLGSHFRRDSKVVIDQALAYVDSLKLAGNG 311 C +W VE +N+ WKT+P C YV YM+G ++ + V D+A Y S+ L +G Sbjct: 43 CTTWRFVVETNNLSPWKTIPEECADYVKEYMVGPGYKMEIDRVSDEAGEYAKSVDLGDDG 102 Query: 312 KEVWVFDIDETTLSNLPYYAQAR 380 ++VW+FD+DET LSNLPYY+ R Sbjct: 103 RDVWIFDVDETLLSNLPYYSDHR 125
>VSPB_SOYBN (P10743) Stem 31 kDa glycoprotein precursor (Vegetative storage| protein B) Length = 254 Score = 74.3 bits (181), Expect(2) = 3e-17 Identities = 43/105 (40%), Positives = 59/105 (56%), Gaps = 1/105 (0%) Frame = +3 Query: 90 LRPLLGSGKHAG-VACDSWVLGVEAHNVRDWKTVPASCEGYVGHYMLGSHFRRDSKVVID 266 LR G G+ + V C S+ L VEAHN+R +KT+P C Y+ G FR DSK V Sbjct: 28 LRMKTGYGERSSEVKCASFRLAVEAHNIRAFKTIPEECVEPTKDYINGEQFRSDSKTVNQ 87 Query: 267 QALAYVDSLKLAGNGKEVWVFDIDETTLSNLPYYAQARLRGYTVQ 401 QA Y ++ N ++++F ID T LSN+PYY + GY V+ Sbjct: 88 QAFFYASEREVHHN--DIFIFGIDNTVLSNIPYYEK---HGYGVE 127 Score = 32.3 bits (72), Expect(2) = 3e-17 Identities = 13/26 (50%), Positives = 18/26 (69%) Frame = +1 Query: 373 KHGFGATPFNATSFNAYVLQGSAPAL 450 KHG+G FN T ++ +V +G APAL Sbjct: 121 KHGYGVEEFNETLYDEWVNKGDAPAL 146
>VSP2_ARATH (O82122) Vegetative storage protein 2 precursor| Length = 265 Score = 81.6 bits (200), Expect = 8e-16 Identities = 38/82 (46%), Positives = 54/82 (65%), Gaps = 1/82 (1%) Frame = +3 Query: 132 CDSWVLGVEAHNVRDWKTVPASCEGYVGHYMLGS-HFRRDSKVVIDQALAYVDSLKLAGN 308 C SW LGVE N+ D+ TVPA+C+ YV Y++ S ++ DSK V +A Y L L + Sbjct: 52 CRSWHLGVETSNIIDFDTVPANCKDYVEDYLITSKQYQYDSKTVCKEAYFYAKGLALKND 111 Query: 309 GKEVWVFDIDETTLSNLPYYAQ 374 VW+FD+D+T LS++PYYA+ Sbjct: 112 TVNVWIFDLDDTLLSSIPYYAK 133
>VSP1_ARATH (O49195) Vegetative storage protein 1 precursor| Length = 270 Score = 79.0 bits (193), Expect = 5e-15 Identities = 37/82 (45%), Positives = 54/82 (65%), Gaps = 1/82 (1%) Frame = +3 Query: 132 CDSWVLGVEAHNVRDWKTVPASCEGYVGHYMLGS-HFRRDSKVVIDQALAYVDSLKLAGN 308 C SW LGVE N+ ++ TVPA+C+ YV Y++ S ++ DSK V +A Y L L + Sbjct: 57 CRSWHLGVETSNIINFDTVPANCKAYVEDYLITSKQYQYDSKTVNKEAYFYAKGLALKND 116 Query: 309 GKEVWVFDIDETTLSNLPYYAQ 374 VW+FD+D+T LS++PYYA+ Sbjct: 117 TINVWIFDLDDTLLSSIPYYAK 138
>S25K_SOYBN (P10742) Stem 31 kDa glycoprotein precursor (Vegetative storage| protein VSP25) (Fragment) Length = 291 Score = 73.6 bits (179), Expect = 2e-13 Identities = 39/93 (41%), Positives = 54/93 (58%) Frame = +3 Query: 126 VACDSWVLGVEAHNVRDWKTVPASCEGYVGHYMLGSHFRRDSKVVIDQALAYVDSLKLAG 305 V C SW L VEAHN+ ++T+P C Y+ G +R DSK V QA Y L++ Sbjct: 37 VKCASWRLAVEAHNIFGFETIPEECVEATKEYIHGEQYRSDSKTVNQQAYFYARDLEV-- 94 Query: 306 NGKEVWVFDIDETTLSNLPYYAQARLRGYTVQR 404 + K+ +VF ID T LSN+PYY + GY V++ Sbjct: 95 HPKDTFVFSIDGTVLSNIPYY---KKHGYGVEK 124 Score = 33.5 bits (75), Expect = 0.25 Identities = 13/26 (50%), Positives = 20/26 (76%) Frame = +1 Query: 373 KHGFGATPFNATSFNAYVLQGSAPAL 450 KHG+G FN+T ++ +V +G+APAL Sbjct: 117 KHGYGVEKFNSTLYDEWVNKGNAPAL 142
>VSPA_SOYBN (P15490) Stem 28 kDa glycoprotein precursor (Vegetative storage| protein A) Length = 254 Score = 73.6 bits (179), Expect = 2e-13 Identities = 39/93 (41%), Positives = 54/93 (58%) Frame = +3 Query: 126 VACDSWVLGVEAHNVRDWKTVPASCEGYVGHYMLGSHFRRDSKVVIDQALAYVDSLKLAG 305 V C SW L VEAHN+ ++T+P C Y+ G +R DSK V QA Y L++ Sbjct: 40 VKCASWRLAVEAHNIFGFETIPEECVEATKEYIHGEQYRSDSKTVNQQAYFYARDLEV-- 97 Query: 306 NGKEVWVFDIDETTLSNLPYYAQARLRGYTVQR 404 + K+ +VF ID T LSN+PYY + GY V++ Sbjct: 98 HPKDTFVFSIDGTVLSNIPYY---KKHGYGVEK 127 Score = 33.5 bits (75), Expect = 0.25 Identities = 13/26 (50%), Positives = 20/26 (76%) Frame = +1 Query: 373 KHGFGATPFNATSFNAYVLQGSAPAL 450 KHG+G FN+T ++ +V +G+APAL Sbjct: 120 KHGYGVEKFNSTLYDEWVNKGNAPAL 145
>CYF_PSINU (Q8WI07) Apocytochrome f precursor| Length = 321 Score = 33.9 bits (76), Expect = 0.19 Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 3/84 (3%) Frame = +3 Query: 21 VNIRMPTSAAD--VDEAVVA-PLIHALRPLLGSGKHAGVACDSWVLGVEAHNVRDWKTVP 191 V+I +P S V EAVV P ++ +LG+GK G+ + ++ E + + +P Sbjct: 66 VDIEVPQSVFPNTVFEAVVKIPYDKQIKQVLGNGKKGGINVGAVLILPEGFELAPYNRIP 125 Query: 192 ASCEGYVGHYMLGSHFRRDSKVVI 263 A + +G L ++R D + +I Sbjct: 126 AEMKDKIGDLALFQNYRPDKRNII 149
>MMPL8_MYCTU (O07800) Putative membrane protein mmpL8| Length = 1089 Score = 30.8 bits (68), Expect = 1.6 Identities = 18/50 (36%), Positives = 26/50 (52%) Frame = +3 Query: 150 GVEAHNVRDWKTVPASCEGYVGHYMLGSHFRRDSKVVIDQALAYVDSLKL 299 G+ +N D KT+PAS E +G+ L HF S ++I + L S L Sbjct: 418 GLARYNYDDRKTLPASVESSIGYAALDKHF--PSNLIIPEYLFIQSSTDL 465
>RPOB_GRATL (Q6B8R8) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta subunit) (RNA polymerase beta subunit) Length = 1120 Score = 30.0 bits (66), Expect = 2.8 Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 5/70 (7%) Frame = +3 Query: 75 PLIHALRPLLGSGKHAGVACDSWVLGVEAHN-----VRDWKTVPASCEGYVGHYMLGSHF 239 PL+ + ++G+G A +A DS + + N V K + EGY HY L ++ Sbjct: 591 PLLFPEKSIVGTGLEAKIAKDSGMTIISRTNGTVSYVSGTKIGIQNKEGYTIHYRLKKYY 650 Query: 240 RRDSKVVIDQ 269 R + I+Q Sbjct: 651 RSNQDTCINQ 660
>PTK2_CANGA (Q6FRE7) Serine/threonine-protein kinase PTK2 (EC 2.7.11.1)| Length = 777 Score = 29.6 bits (65), Expect = 3.6 Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 1/36 (2%) Frame = +2 Query: 344 HPLQPPLLRPSTASGLHR-STRPASTHTCYRGARQP 448 HP+ P++ T GLH S PA THT P Sbjct: 566 HPIPSPMVGTDTNGGLHSDSENPAGTHTTEESVETP 601
>PYRD_SACCA (Q6V3X0) Dihydroorotate dehydrogenase (EC 1.3.3.1) (Dihydroorotate| oxidase) (DHOdehase) (DHODase) (DHOD) Length = 314 Score = 29.3 bits (64), Expect = 4.7 Identities = 20/73 (27%), Positives = 35/73 (47%) Frame = +3 Query: 231 SHFRRDSKVVIDQALAYVDSLKLAGNGKEVWVFDIDETTLSNLPYYAQARLRGYTVQRDQ 410 +HF + ++ LAYV+S+ GNG + D+D+ ++ P + G V+ Sbjct: 175 AHFDIMAGILNQYPLAYVNSINSVGNGLYI---DVDKESVVVKPKNGFGGIGGEYVKPTA 231 Query: 411 LQRIRATGERASP 449 L +RA R +P Sbjct: 232 LANVRAFYTRLNP 244
>PYRD_SACBA (Q7Z894) Dihydroorotate dehydrogenase (EC 1.3.3.1) (Dihydroorotate| oxidase) (DHOdehase) (DHODase) (DHOD) Length = 314 Score = 29.3 bits (64), Expect = 4.7 Identities = 20/73 (27%), Positives = 36/73 (49%) Frame = +3 Query: 231 SHFRRDSKVVIDQALAYVDSLKLAGNGKEVWVFDIDETTLSNLPYYAQARLRGYTVQRDQ 410 +HF +K++ + LAYV+S+ GNG + D+++ ++ P + G V+ Sbjct: 175 AHFDIMAKILNEFPLAYVNSINSVGNGLFI---DVEKESVVVKPKNGFGGIGGEYVKPTA 231 Query: 411 LQRIRATGERASP 449 L +RA R P Sbjct: 232 LANVRAFYTRLRP 244
>RPOB_CYACA (Q9TM35) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta subunit) (RNA polymerase beta subunit) Length = 1081 Score = 29.3 bits (64), Expect = 4.7 Identities = 13/31 (41%), Positives = 19/31 (61%) Frame = +3 Query: 75 PLIHALRPLLGSGKHAGVACDSWVLGVEAHN 167 PLI RPL+G+G A +A DS ++ + N Sbjct: 552 PLIFPERPLVGTGLEAQIAKDSGIMAISRSN 582
>PYRD_YEAST (P28272) Dihydroorotate dehydrogenase (EC 1.3.3.1) (Dihydroorotate| oxidase) (DHOdehase) (DHODase) (DHOD) Length = 314 Score = 28.9 bits (63), Expect = 6.2 Identities = 20/73 (27%), Positives = 36/73 (49%) Frame = +3 Query: 231 SHFRRDSKVVIDQALAYVDSLKLAGNGKEVWVFDIDETTLSNLPYYAQARLRGYTVQRDQ 410 +HF +K++ + LAYV+S+ GNG + D+++ ++ P + G V+ Sbjct: 175 AHFDIMAKILNEFPLAYVNSINSIGNGLFI---DVEKESVVVKPKNGFGGIGGEYVKPTA 231 Query: 411 LQRIRATGERASP 449 L +RA R P Sbjct: 232 LANVRAFYTRLRP 244
>PYRD_SACPA (Q7Z891) Dihydroorotate dehydrogenase (EC 1.3.3.1) (Dihydroorotate| oxidase) (DHOdehase) (DHODase) (DHOD) Length = 314 Score = 28.9 bits (63), Expect = 6.2 Identities = 20/73 (27%), Positives = 36/73 (49%) Frame = +3 Query: 231 SHFRRDSKVVIDQALAYVDSLKLAGNGKEVWVFDIDETTLSNLPYYAQARLRGYTVQRDQ 410 +HF +K++ + LAYV+S+ GNG + D+++ ++ P + G V+ Sbjct: 175 AHFDIMAKILNEFPLAYVNSINSIGNGLFI---DVEKESVVVKPKNGFGGIGGEYVKPTA 231 Query: 411 LQRIRATGERASP 449 L +RA R P Sbjct: 232 LANVRAFYTRLRP 244
>PYRD_SACMI (Q7Z893) Dihydroorotate dehydrogenase (EC 1.3.3.1) (Dihydroorotate| oxidase) (DHOdehase) (DHODase) (DHOD) Length = 314 Score = 28.9 bits (63), Expect = 6.2 Identities = 20/73 (27%), Positives = 36/73 (49%) Frame = +3 Query: 231 SHFRRDSKVVIDQALAYVDSLKLAGNGKEVWVFDIDETTLSNLPYYAQARLRGYTVQRDQ 410 +HF +K++ + LAYV+S+ GNG + D+++ ++ P + G V+ Sbjct: 175 AHFDIIAKILNEFPLAYVNSINSIGNGLFI---DVEKESVVVKPKNGFGGIGGEYVKPTA 231 Query: 411 LQRIRATGERASP 449 L +RA R P Sbjct: 232 LANVRAFYTRLRP 244
>PLB3_CANAL (Q9UVX1) Lysophospholipase 3 precursor (EC 3.1.1.5) (Phospholipase| B 3) Length = 754 Score = 28.9 bits (63), Expect = 6.2 Identities = 24/79 (30%), Positives = 35/79 (44%), Gaps = 1/79 (1%) Frame = +3 Query: 84 HALRPLLGSGKHA-GVACDSWVLGVEAHNVRDWKTVPASCEGYVGHYMLGSHFRRDSKVV 260 H L LL S + G++ +W++G A N DW +V G + L S + Sbjct: 209 HGLGGLLDSSTYVVGLSGGNWLVGSLALN--DWLSVGDIVNGKSTIWQLQDSILNPSGMR 266 Query: 261 IDQALAYVDSLKLAGNGKE 317 ID+ +AY L A KE Sbjct: 267 IDKTIAYYYGLAQAVQAKE 285
>CCKN1_XENLA (P50144) Cholecystokinin type 1 precursor [Contains:| Cholecystokinin (CCK)] Length = 123 Score = 28.9 bits (63), Expect = 6.2 Identities = 19/57 (33%), Positives = 29/57 (50%) Frame = +3 Query: 249 SKVVIDQALAYVDSLKLAGNGKEVWVFDIDETTLSNLPYYAQARLRGYTVQRDQLQR 419 S + I LA + + A ++ V ++D+ TLS LP YA+A G Q+ QR Sbjct: 3 SGICICLLLAMLSASSKAHQSEDAVVTEMDQLTLSQLPRYARASSAG---QKKSFQR 56
>HEL_HAEIN (P26093) Lipoprotein E precursor (Outer membrane protein P4) (OMP| P4) Length = 274 Score = 28.5 bits (62), Expect = 8.1 Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 9/57 (15%) Frame = +3 Query: 222 MLGSHFRRDSKVVIDQALAY---------VDSLKLAGNGKEVWVFDIDETTLSNLPY 365 +LG ++ +DS +ALAY D K+A K+ V D+DET L N PY Sbjct: 41 VLGLNWMQDSGEY--KALAYQAYNAAKVAFDHAKVAKGKKKAVVADLDETMLDNSPY 95
>THII_PSEPK (Q88CY4) Thiamine biosynthesis protein thiI| Length = 484 Score = 28.5 bits (62), Expect = 8.1 Identities = 11/31 (35%), Positives = 18/31 (58%) Frame = +3 Query: 147 LGVEAHNVRDWKTVPASCEGYVGHYMLGSHF 239 L VE + + D+ + A C+ + GH + G HF Sbjct: 79 LQVEEYPLGDFDDIVAKCKHHFGHLLAGKHF 109 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.315 0.126 0.406 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 47,491,963 Number of Sequences: 219361 Number of extensions: 844459 Number of successful extensions: 3083 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 2980 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3076 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2735358828 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits)
