ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart54g08 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|D83178.1| Hordeum vulgare mRNA for endonuclease, complete cds Length = 1180 Score = 256 bits (129), Expect = 7e-65 Identities = 222/253 (87%) Strand = Plus / Plus Query: 270 gtggtccggctccctgcacttcgccgacacccccggcgactgcaagttcagctacgccag 329 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 279 gtggtcccgctccctgcacttcgccgacacccccggcgactgcaagttcagctacgccag 338 Query: 330 ggactgccacgggacgaaaggggagaaggacatgtgcgtcgtcggaggcatcaacaacta 389 ||||||||||| || || ||| | ||| || ||||||| ||||| | |||||||||||| Sbjct: 339 ggactgccacgacaccaaggggaacaagaacgtgtgcgtggtcggggccatcaacaacta 398 Query: 390 caccgccgccctccaagactcctcaagcccgtatagccggacggagagcctgctgttcct 449 ||||||||| ||||| ||||| || ||||| | || || ||||||||||||| ||||||| Sbjct: 399 caccgccgcgctccaggactcgtccagcccatttaacccgacggagagcctgatgttcct 458 Query: 450 gtcgcacttcctgggcgacatccaccagcccatgcactgcggccgcaccgccgacctcgg 509 | |||||||| |||||||| | |||||||| ||||||||||||| | || ||||||||| Sbjct: 459 ggcgcacttcgtgggcgacgtgcaccagccgatgcactgcggccacgtcgacgacctcgg 518 Query: 510 cggccacaccatc 522 |||| |||||||| Sbjct: 519 cggcaacaccatc 531 Score = 143 bits (72), Expect = 7e-31 Identities = 114/128 (89%) Strand = Plus / Plus Query: 122 aggagggccactacatgacctgcaagatcgccgagggtttcctgacgggcgaggcgtcgg 181 |||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| | Sbjct: 131 aggagggccactacatgacctgcaagatcgccgacggtttcctgacgagcgaggcgttga 190 Query: 182 cggcggtgaaggggctcctgccggagtgggccgtcggcgagctcgcggcggcgtgctcgt 241 ||| |||||||| |||||| ||| ||||||| |||||||||||||| || |||||||| Sbjct: 191 cgggggtgaaggcgctcctcccgtcgtgggccaacggcgagctcgcggaggtgtgctcgt 250 Query: 242 ggccggac 249 || ||||| Sbjct: 251 gggcggac 258
>dbj|AB028448.1| Hordeum vulgare Bnuc1 mRNA for nuclease I, complete cds Length = 1283 Score = 218 bits (110), Expect = 1e-53 Identities = 209/242 (86%) Strand = Plus / Plus Query: 281 ccctgcacttcgccgacacccccggcgactgcaagttcagctacgccagggactgccacg 340 ||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| Sbjct: 318 ccctgcacttcgccgacacccccggtgactgcaacttcagctacgccagggactgccacg 377 Query: 341 ggacgaaaggggagaaggacatgtgcgtcgtcggaggcatcaacaactacaccgccgccc 400 || || ||| | |||||| ||||||| || |||| ||||||||||||||||||||| | Sbjct: 378 acaccaaggggaacaaggacgtgtgcgtggtgggagccatcaacaactacaccgccgcgc 437 Query: 401 tccaagactcctcaagcccgtatagccggacggagagcctgctgttcctgtcgcacttcc 460 || | ||| | || ||||||||| || ||||||||||||| |||||||| |||||||| Sbjct: 438 tcgaggacccgtccagcccgtatgacccgacggagagcctgatgttcctggcgcacttcg 497 Query: 461 tgggcgacatccaccagcccatgcactgcggccgcaccgccgacctcggcggccacacca 520 |||||||| | |||||||| |||||||||||| | || ||||||||||||| |||||| Sbjct: 498 tgggcgacgtgcaccagccactgcactgcggccacgtcgacgacctcggcggcaacacca 557 Query: 521 tc 522 || Sbjct: 558 tc 559 Score = 143 bits (72), Expect = 7e-31 Identities = 114/128 (89%) Strand = Plus / Plus Query: 122 aggagggccactacatgacctgcaagatcgccgagggtttcctgacgggcgaggcgtcgg 181 ||||||| |||||||||||||||||||||||||| |||||||||||| ||||||| |||| Sbjct: 159 aggaggggcactacatgacctgcaagatcgccgatggtttcctgacgagcgaggcatcgg 218 Query: 182 cggcggtgaaggggctcctgccggagtgggccgtcggcgagctcgcggcggcgtgctcgt 241 |||||||||||| ||||||||| ||||||| |||||||||||||| || |||| ||| Sbjct: 219 cggcggtgaaggacctcctgccgtcgtgggccaacggcgagctcgcggaggtgtgcgcgt 278 Query: 242 ggccggac 249 || ||||| Sbjct: 279 gggcggac 286
>ref|XM_474151.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 873 Score = 190 bits (96), Expect = 3e-45 Identities = 228/272 (83%) Strand = Plus / Plus Query: 122 aggagggccactacatgacctgcaagatcgccgagggtttcctgacgggcgaggcgtcgg 181 ||||||||||||||||| ||||||||||||||||||||||||||| |||||| || Sbjct: 86 aggagggccactacatggtgtgcaagatcgccgagggtttcctgacgaaggaggcggcga 145 Query: 182 cggcggtgaaggggctcctgccggagtgggccgtcggcgagctcgcggcggcgtgctcgt 241 |||||||||||| |||||| || | |||||||| |||||||||||||| ||||||||| Sbjct: 146 cggcggtgaaggagctcctccccgggtgggccggcggcgagctcgcggaaacgtgctcgt 205 Query: 242 ggccggacgccgtgcggcgccagatgccgtggtccggctccctgcacttcgccgacaccc 301 || ||||| ||| |||| || | | |||||| || |||| |||||||||||||||| Sbjct: 206 gggcggacaccgagcggttccggtaccggtggtcgagccccctccacttcgccgacaccc 265 Query: 302 ccggcgactgcaagttcagctacgccagggactgccacgggacgaaaggggagaaggaca 361 ||||||||||| |||||| ||||||| |||| |||||| || || || |||||||||| Sbjct: 266 ccggcgactgccagttcaactacgcccgggattgccacaacacaaacggtgagaaggaca 325 Query: 362 tgtgcgtcgtcggaggcatcaacaactacacc 393 |||| || ||||||| ||||||||||||||| Sbjct: 326 tgtgtgtggtcggagcgatcaacaactacacc 357
>dbj|AK106059.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-206-F11, full insert sequence Length = 1146 Score = 190 bits (96), Expect = 3e-45 Identities = 228/272 (83%) Strand = Plus / Plus Query: 122 aggagggccactacatgacctgcaagatcgccgagggtttcctgacgggcgaggcgtcgg 181 ||||||||||||||||| ||||||||||||||||||||||||||| |||||| || Sbjct: 112 aggagggccactacatggtgtgcaagatcgccgagggtttcctgacgaaggaggcggcga 171 Query: 182 cggcggtgaaggggctcctgccggagtgggccgtcggcgagctcgcggcggcgtgctcgt 241 |||||||||||| |||||| || | |||||||| |||||||||||||| ||||||||| Sbjct: 172 cggcggtgaaggagctcctccccgggtgggccggcggcgagctcgcggaaacgtgctcgt 231 Query: 242 ggccggacgccgtgcggcgccagatgccgtggtccggctccctgcacttcgccgacaccc 301 || ||||| ||| |||| || | | |||||| || |||| |||||||||||||||| Sbjct: 232 gggcggacaccgagcggttccggtaccggtggtcgagccccctccacttcgccgacaccc 291 Query: 302 ccggcgactgcaagttcagctacgccagggactgccacgggacgaaaggggagaaggaca 361 ||||||||||| |||||| ||||||| |||| |||||| || || || |||||||||| Sbjct: 292 ccggcgactgccagttcaactacgcccgggattgccacaacacaaacggtgagaaggaca 351 Query: 362 tgtgcgtcgtcggaggcatcaacaactacacc 393 |||| || ||||||| ||||||||||||||| Sbjct: 352 tgtgtgtggtcggagcgatcaacaactacacc 383
>emb|AJ311603.1|HVU311603 Hordeum vulgare mRNA for putative nuclease (bnuc2 gene) Length = 1139 Score = 147 bits (74), Expect = 4e-32 Identities = 203/246 (82%) Strand = Plus / Plus Query: 283 ctgcacttcgccgacacccccggcgactgcaagttcagctacgccagggactgccacggg 342 ||||||||||| |||||||| ||||||||||||||||||||| |||||||||||| Sbjct: 299 ctgcacttcgctgacaccccaaaagactgcaagttcagctacgcccgggactgccacgac 358 Query: 343 acgaaaggggagaaggacatgtgcgtcgtcggaggcatcaacaactacaccgccgccctc 402 || || ||| | |||||| |||||| ||||| | ||| |||||||||||||||||||| Sbjct: 359 accaaggggaacaaggacgcgtgcgtggtcggggccattaacaactacaccgccgccctg 418 Query: 403 caagactcctcaagcccgtatagccggacggagagcctgctgttcctgtcgcacttcctg 462 || ||| | || | ||||||| ||||||||||||||| |||||||| | |||||| | Sbjct: 419 caggacccatctaatccgtataatcggacggagagcctgatgttcctggcccacttcgtc 478 Query: 463 ggcgacatccaccagcccatgcactgcggccgcaccgccgacctcggcggccacaccatc 522 |||||| | |||||||| |||||||||||||| | |||||||||||| |||||||| Sbjct: 479 ggcgacgtgcaccagccgctgcactgcggccgcgtggaagacctcggcggcaacaccatc 538 Query: 523 gtcgtc 528 ||||| Sbjct: 539 ctcgtc 544 Score = 117 bits (59), Expect = 4e-23 Identities = 110/127 (86%) Strand = Plus / Plus Query: 122 aggagggccactacatgacctgcaagatcgccgagggtttcctgacgggcgaggcgtcgg 181 ||||||| |||||||||||||||||||||||||| |||||||||||| |||||||||| Sbjct: 138 aggaggggcactacatgacctgcaagatcgccgatggtttcctgacgaaggaggcgtcgg 197 Query: 182 cggcggtgaaggggctcctgccggagtgggccgtcggcgagctcgcggcggcgtgctcgt 241 ||| |||||||| ||||| ||| || |||| |||||||||||||| || |||||||| Sbjct: 198 cgggggtgaaggatctcctcccgtcgtcggccaacggcgagctcgcggaggtgtgctcgt 257 Query: 242 ggccgga 248 || |||| Sbjct: 258 gggcgga 264
>emb|AL606690.3|OSJN00080 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0060D06, complete sequence Length = 151506 Score = 113 bits (57), Expect = 6e-22 Identities = 144/173 (83%) Strand = Plus / Plus Query: 155 agggtttcctgacgggcgaggcgtcggcggcggtgaaggggctcctgccggagtgggccg 214 |||||||||||||| |||||| || |||||||||||| |||||| || | |||||||| Sbjct: 60308 agggtttcctgacgaaggaggcggcgacggcggtgaaggagctcctccccgggtgggccg 60367 Query: 215 tcggcgagctcgcggcggcgtgctcgtggccggacgccgtgcggcgccagatgccgtggt 274 |||||||||||||| ||||||||||| ||||| ||| |||| || | | ||||| Sbjct: 60368 gcggcgagctcgcggaaacgtgctcgtgggcggacaccgagcggttccggtaccggtggt 60427 Query: 275 ccggctccctgcacttcgccgacacccccggcgactgcaagttcagctacgcc 327 | || |||| ||||||||||||||||||||||||||| |||||| ||||||| Sbjct: 60428 cgagccccctccacttcgccgacacccccggcgactgccagttcaactacgcc 60480 Score = 52.0 bits (26), Expect = 0.002 Identities = 38/42 (90%) Strand = Plus / Plus Query: 352 gagaaggacatgtgcgtcgtcggaggcatcaacaactacacc 393 |||||||||||||| || ||||||| ||||||||||||||| Sbjct: 61417 gagaaggacatgtgtgtggtcggagcgatcaacaactacacc 61458 Score = 48.1 bits (24), Expect = 0.030 Identities = 33/36 (91%) Strand = Plus / Plus Query: 122 aggagggccactacatgacctgcaagatcgccgagg 157 ||||||||||||||||| |||||||||||||||| Sbjct: 60190 aggagggccactacatggtgtgcaagatcgccgagg 60225
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 113 bits (57), Expect = 6e-22 Identities = 144/173 (83%) Strand = Plus / Plus Query: 155 agggtttcctgacgggcgaggcgtcggcggcggtgaaggggctcctgccggagtgggccg 214 |||||||||||||| |||||| || |||||||||||| |||||| || | |||||||| Sbjct: 33288047 agggtttcctgacgaaggaggcggcgacggcggtgaaggagctcctccccgggtgggccg 33288106 Query: 215 tcggcgagctcgcggcggcgtgctcgtggccggacgccgtgcggcgccagatgccgtggt 274 |||||||||||||| ||||||||||| ||||| ||| |||| || | | ||||| Sbjct: 33288107 gcggcgagctcgcggaaacgtgctcgtgggcggacaccgagcggttccggtaccggtggt 33288166 Query: 275 ccggctccctgcacttcgccgacacccccggcgactgcaagttcagctacgcc 327 | || |||| ||||||||||||||||||||||||||| |||||| ||||||| Sbjct: 33288167 cgagccccctccacttcgccgacacccccggcgactgccagttcaactacgcc 33288219 Score = 52.0 bits (26), Expect = 0.002 Identities = 38/42 (90%) Strand = Plus / Plus Query: 352 gagaaggacatgtgcgtcgtcggaggcatcaacaactacacc 393 |||||||||||||| || ||||||| ||||||||||||||| Sbjct: 33289156 gagaaggacatgtgtgtggtcggagcgatcaacaactacacc 33289197 Score = 48.1 bits (24), Expect = 0.030 Identities = 33/36 (91%) Strand = Plus / Plus Query: 122 aggagggccactacatgacctgcaagatcgccgagg 157 ||||||||||||||||| |||||||||||||||| Sbjct: 33287929 aggagggccactacatggtgtgcaagatcgccgagg 33287964
>gb|AY105439.1| Zea mays PCO064225 mRNA sequence Length = 1193 Score = 58.0 bits (29), Expect = 3e-05 Identities = 53/61 (86%) Strand = Plus / Plus Query: 419 cgtatagccggacggagagcctgctgttcctgtcgcacttcctgggcgacatccaccagc 478 |||||| || ||||||||||||| |||||||| | |||||| | |||||| ||||||||| Sbjct: 511 cgtataacctgacggagagcctgatgttcctggcacacttcgtcggcgacgtccaccagc 570 Query: 479 c 479 | Sbjct: 571 c 571 Score = 48.1 bits (24), Expect = 0.030 Identities = 102/128 (79%) Strand = Plus / Plus Query: 122 aggagggccactacatgacctgcaagatcgccgagggtttcctgacgggcgaggcgtcgg 181 ||||||||||| |||| |||||||||||||||| | |||| ||| ||||| ||| Sbjct: 208 aggagggccacatcatggtctgcaagatcgccgagaagtacctgtcggagaaggcggcgg 267 Query: 182 cggcggtgaaggggctcctgccggagtgggccgtcggcgagctcgcggcggcgtgctcgt 241 |||||||| ||| ||| |||||||||| ||| | ||| ||||| || ||| |||| ||| Sbjct: 268 cggcggtgcaggcgctgctgccggagtcggcgggcggggagctgtcgacggtgtgcccgt 327 Query: 242 ggccggac 249 || ||||| Sbjct: 328 gggcggac 335 Score = 40.1 bits (20), Expect = 7.2 Identities = 29/32 (90%) Strand = Plus / Plus Query: 361 atgtgcgtcgtcggaggcatcaacaactacac 392 |||||||||||||| | |||||||||||||| Sbjct: 447 atgtgcgtcgtcggggctatcaacaactacac 478
>gb|AF140355.1|AF140355 Crithidia luciliae 3'-nucleotidase/nuclease gene, complete cds Length = 1134 Score = 50.1 bits (25), Expect = 0.008 Identities = 31/33 (93%) Strand = Plus / Plus Query: 454 cacttcctgggcgacatccaccagcccatgcac 486 |||||| |||||||||||||||||||| ||||| Sbjct: 436 cacttcatgggcgacatccaccagcccctgcac 468
>ref|XM_550001.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1290 Score = 48.1 bits (24), Expect = 0.030 Identities = 45/52 (86%) Strand = Plus / Plus Query: 173 aggcgtcggcggcggtgaaggggctcctgccggagtgggccgtcggcgagct 224 ||||| ||||||||||| ||| ||| |||||||||| ||||| ||| ||||| Sbjct: 177 aggcggcggcggcggtggaggagctgctgccggagtcggccggcggggagct 228 Score = 46.1 bits (23), Expect = 0.12 Identities = 44/51 (86%) Strand = Plus / Plus Query: 429 gacggagagcctgctgttcctgtcgcacttcctgggcgacatccaccagcc 479 ||||||||||||| |||||||| | |||||| | |||||| | |||||||| Sbjct: 442 gacggagagcctgatgttcctggcccacttcgtcggcgacgtgcaccagcc 492
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 48.1 bits (24), Expect = 0.030 Identities = 45/52 (86%) Strand = Plus / Plus Query: 173 aggcgtcggcggcggtgaaggggctcctgccggagtgggccgtcggcgagct 224 ||||| ||||||||||| ||| ||| |||||||||| ||||| ||| ||||| Sbjct: 1565424 aggcggcggcggcggtggaggagctgctgccggagtcggccggcggggagct 1565475 Score = 46.1 bits (23), Expect = 0.12 Identities = 44/51 (86%) Strand = Plus / Plus Query: 429 gacggagagcctgctgttcctgtcgcacttcctgggcgacatccaccagcc 479 ||||||||||||| |||||||| | |||||| | |||||| | |||||||| Sbjct: 1567241 gacggagagcctgatgttcctggcccacttcgtcggcgacgtgcaccagcc 1567291
>dbj|AP002538.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0408F06 Length = 137462 Score = 48.1 bits (24), Expect = 0.030 Identities = 45/52 (86%) Strand = Plus / Plus Query: 173 aggcgtcggcggcggtgaaggggctcctgccggagtgggccgtcggcgagct 224 ||||| ||||||||||| ||| ||| |||||||||| ||||| ||| ||||| Sbjct: 2655 aggcggcggcggcggtggaggagctgctgccggagtcggccggcggggagct 2706 Score = 46.1 bits (23), Expect = 0.12 Identities = 44/51 (86%) Strand = Plus / Plus Query: 429 gacggagagcctgctgttcctgtcgcacttcctgggcgacatccaccagcc 479 ||||||||||||| |||||||| | |||||| | |||||| | |||||||| Sbjct: 4472 gacggagagcctgatgttcctggcccacttcgtcggcgacgtgcaccagcc 4522
>dbj|AP002860.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0409B08 Length = 134673 Score = 48.1 bits (24), Expect = 0.030 Identities = 45/52 (86%) Strand = Plus / Plus Query: 173 aggcgtcggcggcggtgaaggggctcctgccggagtgggccgtcggcgagct 224 ||||| ||||||||||| ||| ||| |||||||||| ||||| ||| ||||| Sbjct: 131072 aggcggcggcggcggtggaggagctgctgccggagtcggccggcggggagct 131123 Score = 46.1 bits (23), Expect = 0.12 Identities = 44/51 (86%) Strand = Plus / Plus Query: 429 gacggagagcctgctgttcctgtcgcacttcctgggcgacatccaccagcc 479 ||||||||||||| |||||||| | |||||| | |||||| | |||||||| Sbjct: 132889 gacggagagcctgatgttcctggcccacttcgtcggcgacgtgcaccagcc 132939
>dbj|AK071917.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013071I09, full insert sequence Length = 3171 Score = 48.1 bits (24), Expect = 0.030 Identities = 45/52 (86%) Strand = Plus / Minus Query: 173 aggcgtcggcggcggtgaaggggctcctgccggagtgggccgtcggcgagct 224 ||||| ||||||||||| ||| ||| |||||||||| ||||| ||| ||||| Sbjct: 134 aggcggcggcggcggtggaggagctgctgccggagtcggccggcggggagct 83
>dbj|AK059608.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-030-F03, full insert sequence Length = 1290 Score = 48.1 bits (24), Expect = 0.030 Identities = 45/52 (86%) Strand = Plus / Plus Query: 173 aggcgtcggcggcggtgaaggggctcctgccggagtgggccgtcggcgagct 224 ||||| ||||||||||| ||| ||| |||||||||| ||||| ||| ||||| Sbjct: 177 aggcggcggcggcggtggaggagctgctgccggagtcggccggcggggagct 228 Score = 46.1 bits (23), Expect = 0.12 Identities = 44/51 (86%) Strand = Plus / Plus Query: 429 gacggagagcctgctgttcctgtcgcacttcctgggcgacatccaccagcc 479 ||||||||||||| |||||||| | |||||| | |||||| | |||||||| Sbjct: 442 gacggagagcctgatgttcctggcccacttcgtcggcgacgtgcaccagcc 492
>dbj|AK120005.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-186-A02, full insert sequence Length = 1537 Score = 46.1 bits (23), Expect = 0.12 Identities = 44/51 (86%) Strand = Plus / Minus Query: 429 gacggagagcctgctgttcctgtcgcacttcctgggcgacatccaccagcc 479 ||||||||||||| |||||||| | |||||| | |||||| | |||||||| Sbjct: 749 gacggagagcctgatgttcctggcccacttcgtcggcgacgtgcaccagcc 699
>gb|AC130728.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0663C08, complete sequence Length = 142196 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Minus Query: 308 actgcaagttcagctacgccag 329 |||||||||||||||||||||| Sbjct: 112943 actgcaagttcagctacgccag 112922
>emb|BX572593.1| Rhodopseudomonas palustris CGA009 complete genome; segment 1/16 Length = 349315 Score = 44.1 bits (22), Expect = 0.46 Identities = 28/30 (93%) Strand = Plus / Plus Query: 484 cactgcggccgcaccgccgacctcggcggc 513 |||||||| |||||||||||||| |||||| Sbjct: 84415 cactgcgggcgcaccgccgaccttggcggc 84444
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Plus Query: 169 ggcgaggcgtcggcggcggtga 190 |||||||||||||||||||||| Sbjct: 23397164 ggcgaggcgtcggcggcggtga 23397185 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 289 ttcgccgacacccccggcgactgca 313 ||||||| ||||||||||||||||| Sbjct: 5924436 ttcgccgtcacccccggcgactgca 5924460
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 44.1 bits (22), Expect = 0.46 Identities = 25/26 (96%) Strand = Plus / Plus Query: 124 gagggccactacatgacctgcaagat 149 |||||||||||||| ||||||||||| Sbjct: 28863210 gagggccactacattacctgcaagat 28863235 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 176 cgtcggcggcggtgaaggggc 196 ||||||||||||||||||||| Sbjct: 7803216 cgtcggcggcggtgaaggggc 7803236
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Minus Query: 308 actgcaagttcagctacgccag 329 |||||||||||||||||||||| Sbjct: 29334286 actgcaagttcagctacgccag 29334265 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 169 ggcgaggcgtcggcggcggtgaag 192 ||||||||| |||||||||||||| Sbjct: 21778643 ggcgaggcggcggcggcggtgaag 21778620 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 217 ggcgagctcgcggcggcgtg 236 |||||||||||||||||||| Sbjct: 4357349 ggcgagctcgcggcggcgtg 4357368
>dbj|AP004182.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1199_H01 Length = 107252 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Plus Query: 169 ggcgaggcgtcggcggcggtga 190 |||||||||||||||||||||| Sbjct: 78388 ggcgaggcgtcggcggcggtga 78409
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Minus Query: 45 ccggctgcttcaggccgtcctc 66 |||||||||||||||||||||| Sbjct: 5488685 ccggctgcttcaggccgtcctc 5488664 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 437 gcctgctgttcctgtcgcac 456 |||||||||||||||||||| Sbjct: 1506984 gcctgctgttcctgtcgcac 1507003
>dbj|AP004278.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0468G03 Length = 143918 Score = 44.1 bits (22), Expect = 0.46 Identities = 25/26 (96%) Strand = Plus / Plus Query: 124 gagggccactacatgacctgcaagat 149 |||||||||||||| ||||||||||| Sbjct: 13254 gagggccactacattacctgcaagat 13279
>dbj|AP004276.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0453G03 Length = 144480 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Plus Query: 169 ggcgaggcgtcggcggcggtga 190 |||||||||||||||||||||| Sbjct: 17061 ggcgaggcgtcggcggcggtga 17082
>ref|XM_477103.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2292 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 289 ttcgccgacacccccggcgactgca 313 ||||||| ||||||||||||||||| Sbjct: 1046 ttcgccgtcacccccggcgactgca 1022
>gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete genome Length = 6093698 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 178 tcggcggcggtgaaggggctc 198 ||||||||||||||||||||| Sbjct: 3385402 tcggcggcggtgaaggggctc 3385382
>ref|XM_284542.6| PREDICTED: Mus musculus hypothetical protein LOC620538 (LOC620538), mRNA Length = 5131 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 215 tcggcgagctcgcggcggcgtgctc 239 |||||||||||||||||||| |||| Sbjct: 100 tcggcgagctcgcggcggcgcgctc 76
>dbj|AK079552.1| Mus musculus adult male hypothalamus cDNA, RIKEN full-length enriched library, clone:A230061D21 product:hypothetical TPR repeat/Ankyrin-repeat/Ankyrin repeat region circular profile/Yeast DNA-binding domain containing protein, full insert sequence Length = 2845 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 215 tcggcgagctcgcggcggcgtgctc 239 |||||||||||||||||||| |||| Sbjct: 101 tcggcgagctcgcggcggcgcgctc 77
>gb|AC126677.3| Mus musculus BAC clone RP24-156D14 from chromosome 9, complete sequence Length = 152468 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 215 tcggcgagctcgcggcggcgtgctc 239 |||||||||||||||||||| |||| Sbjct: 37471 tcggcgagctcgcggcggcgcgctc 37495
>dbj|AP005107.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0431E05 Length = 146091 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 176 cgtcggcggcggtgaaggggc 196 ||||||||||||||||||||| Sbjct: 17598 cgtcggcggcggtgaaggggc 17618
>dbj|AP004651.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0091G06 Length = 161851 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 176 cgtcggcggcggtgaaggggc 196 ||||||||||||||||||||| Sbjct: 115714 cgtcggcggcggtgaaggggc 115734
>dbj|AP003748.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1136_A05 Length = 120823 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 289 ttcgccgacacccccggcgactgca 313 ||||||| ||||||||||||||||| Sbjct: 66884 ttcgccgtcacccccggcgactgca 66908
>dbj|AK120944.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023037N02, full insert sequence Length = 2827 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 289 ttcgccgacacccccggcgactgca 313 ||||||| ||||||||||||||||| Sbjct: 1276 ttcgccgtcacccccggcgactgca 1252
>gb|DQ232586.1| Rhodobacter sphaeroides 2.4.1 plasmid A, partial sequence Length = 114045 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 179 cggcggcggtgaaggggctc 198 |||||||||||||||||||| Sbjct: 24228 cggcggcggtgaaggggctc 24247 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 179 cggcggcggtgaaggggctc 198 |||||||||||||||||||| Sbjct: 23412 cggcggcggtgaaggggctc 23431
>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome Length = 3188609 Score = 40.1 bits (20), Expect = 7.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 443 tgttcctgtcgcacttcctgggcgacat 470 ||||||||||| ||||||| |||||||| Sbjct: 2787738 tgttcctgtcggacttcctcggcgacat 2787711
>gb|AC136228.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0672D07, complete sequence Length = 136465 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 217 ggcgagctcgcggcggcgtg 236 |||||||||||||||||||| Sbjct: 111956 ggcgagctcgcggcggcgtg 111975
>gb|AC135421.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0012G21, complete sequence Length = 135750 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 169 ggcgaggcgtcggcggcggtgaag 192 ||||||||| |||||||||||||| Sbjct: 31052 ggcgaggcggcggcggcggtgaag 31029
>gb|AC114637.9| Mus musculus chromosome 3, clone RP24-119G15, complete sequence Length = 179087 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 2 aggacagagagagggccaag 21 |||||||||||||||||||| Sbjct: 25862 aggacagagagagggccaag 25881
>ref|XM_362563.1| Magnaporthe grisea 70-15 hypothetical protein (MG08146.4) partial mRNA Length = 1659 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 138 gacctgcaagatcgccgagg 157 |||||||||||||||||||| Sbjct: 1632 gacctgcaagatcgccgagg 1651
>emb|CR956405.10| Pig DNA sequence from clone CH242-240K6 on chromosome 17, complete sequence Length = 135681 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 48 gctgcttcaggccgtcctcc 67 |||||||||||||||||||| Sbjct: 28464 gctgcttcaggccgtcctcc 28445
>gb|AC121797.3| Mus musculus BAC clone RP23-424C23 from chromosome 3, complete sequence Length = 177109 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 2 aggacagagagagggccaag 21 |||||||||||||||||||| Sbjct: 19359 aggacagagagagggccaag 19340
>ref|XM_505956.1| Yarrowia lipolytica CLIB122, YALI0F27643g predicted mRNA Length = 1920 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 431 cggagagcctgctgttcctg 450 |||||||||||||||||||| Sbjct: 980 cggagagcctgctgttcctg 961
>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence Length = 3806533 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 248 acgccgtgcggcgccagatg 267 |||||||||||||||||||| Sbjct: 3428086 acgccgtgcggcgccagatg 3428067
>emb|BX640595.13| Zebrafish DNA sequence from clone CH211-117K11 in linkage group 2, complete sequence Length = 121429 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 34 atggggttcctccggctgcttcag 57 ||||| |||||||||||||||||| Sbjct: 86090 atgggtttcctccggctgcttcag 86067
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 210 ggccgtcggcgagctcgcgg 229 |||||||||||||||||||| Sbjct: 2769018 ggccgtcggcgagctcgcgg 2769037
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 146 agatcgccgagggtttcctg 165 |||||||||||||||||||| Sbjct: 17310943 agatcgccgagggtttcctg 17310924
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 174 ggcgtcggcggcggtgaagg 193 |||||||||||||||||||| Sbjct: 1406836 ggcgtcggcggcggtgaagg 1406817
>dbj|AP005317.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0579G08 Length = 164452 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 146 agatcgccgagggtttcctg 165 |||||||||||||||||||| Sbjct: 83626 agatcgccgagggtttcctg 83607
>gb|AY084035.1| Yarrowia lipolytica Bem1p (BEM1) gene, complete cds Length = 4694 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 431 cggagagcctgctgttcctg 450 |||||||||||||||||||| Sbjct: 2312 cggagagcctgctgttcctg 2293
>dbj|AK106805.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-116-C03, full insert sequence Length = 935 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 217 ggcgagctcgcggcggcgtg 236 |||||||||||||||||||| Sbjct: 316 ggcgagctcgcggcggcgtg 297
>gb|AY623658.2| Aeromicrobium erythreum putative transcriptional repressor and putative dehydrogenase/reductase genes, complete cds; erythromycin biosynthesis gene cluster, complete sequence; putative oxidoreductase and LipN genes, complete cds; monoamine oxidase gene, partial cds; and unknown gene Length = 61845 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 215 tcggcgagctcgcggcggcg 234 |||||||||||||||||||| Sbjct: 54079 tcggcgagctcgcggcggcg 54060
>gb|AE015451.1| Pseudomonas putida KT2440 complete genome Length = 6181863 Score = 40.1 bits (20), Expect = 7.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 281 ccctgcacttcgccgacacccccggcga 308 |||||| |||||||| |||||||||||| Sbjct: 488293 ccctgcgcttcgccgtcacccccggcga 488266
>emb|CR382132.1| Yarrowia lipolytica chromosome F of strain CLIB122 of Yarrowia lipolytica Length = 4003362 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 431 cggagagcctgctgttcctg 450 |||||||||||||||||||| Sbjct: 3506021 cggagagcctgctgttcctg 3506040 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,248,122 Number of Sequences: 3902068 Number of extensions: 3248122 Number of successful extensions: 65893 Number of sequences better than 10.0: 54 Number of HSP's better than 10.0 without gapping: 59 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 63986 Number of HSP's gapped (non-prelim): 1902 length of query: 534 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 511 effective length of database: 17,143,297,704 effective search space: 8760225126744 effective search space used: 8760225126744 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
