ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart54f07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1VG50_ICHV1 (Q00130) Hypothetical gene 50 protein 30 2.4
2NO20_MEDTR (P93329) Early nodulin 20 precursor (N-20) 29 4.1

>VG50_ICHV1 (Q00130) Hypothetical gene 50 protein|
          Length = 670

 Score = 29.6 bits (65), Expect = 2.4
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = -1

Query: 128 HCRQQGHGHGDGARGSPARH 69
           H    GHGHG G RG P  H
Sbjct: 643 HGHGHGHGHGHGGRGPPGGH 662



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>NO20_MEDTR (P93329) Early nodulin 20 precursor (N-20)|
          Length = 268

 Score = 28.9 bits (63), Expect = 4.1
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = +1

Query: 22  SPPRTRASSFLSLHHPWRAGLPRAPSPWPWP 114
           SPP  R+S+   + HP R  LP  PSP P P
Sbjct: 141 SPPTPRSST--PIPHPPRRSLPSPPSPSPSP 169


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,135,532
Number of Sequences: 219361
Number of extensions: 201927
Number of successful extensions: 1042
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 982
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1033
length of database: 80,573,946
effective HSP length: 18
effective length of database: 76,625,448
effective search space used: 1839010752
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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