>PSD8_DICDI (P02889) Probable 26S proteasome non-ATPase regulatory subunit 8|
           (Vegetative cell protein X) (M4 protein)
          Length = 263

 Score = 73.2 bits (178), Expect = 4e-13
 Identities = 45/103 (43%), Positives = 59/103 (57%), Gaps = 1/103 (0%)
 Frame = +3

Query: 216 KAACKRSDLDASATLLSQLKVLLTKFPSLPPLFQQTPNAVE-ELKLAREIYEHAVLLSVK 392
           K     SD      +L QLK+  T     P       + V+ +L LAREI E   L S+K
Sbjct: 15  KLVAGNSDKAQITPVLVQLKLAATIHLEKPTSLSNVSDKVKKDLVLAREILELISLYSIK 74

Query: 393 MEDQDAFERDFCQLKPYYMDTCGILPPSSMEYPIMGLNLLRLL 521
           ++D D+FER F QLK YY D   I+ PS++EY I+GLNL+RLL
Sbjct: 75  IKDIDSFERTFNQLKTYYYDYKSIIAPSTLEYQIIGLNLMRLL 117

>PSD8_PONPY (Q5RE15) 26S proteasome non-ATPase regulatory subunit 8|
          Length = 257

 Score = 51.6 bits (122), Expect = 1e-06
 Identities = 38/109 (34%), Positives = 56/109 (51%), Gaps = 2/109 (1%)
 Frame = +3

Query: 201 LFERFKAACKRS--DLDASATLLSQLKVLLTKFPSLPPLFQQTPNAVEELKLAREIYEHA 374
           ++E+ K    R   +L      L +LK++L +   LP     T    ++L LAR+I E  
Sbjct: 1   MYEQLKGEWNRKSPNLSKCGEELGRLKLVLLELNFLPTT--GTKLTKQQLILARDILEIG 58

Query: 375 VLLSVKMEDQDAFERDFCQLKPYYMDTCGILPPSSMEYPIMGLNLLRLL 521
              S+  +D  +FER   QLK YY D    LP S+  + ++GLNLL LL
Sbjct: 59  AQWSILRKDIPSFERYMAQLKCYYFDYKEQLPESAYMHQLLGLNLLFLL 107

>PSD8_HUMAN (P48556) 26S proteasome non-ATPase regulatory subunit 8 (26S|
           proteasome regulatory subunit S14) (p31)
          Length = 257

 Score = 51.6 bits (122), Expect = 1e-06
 Identities = 38/109 (34%), Positives = 56/109 (51%), Gaps = 2/109 (1%)
 Frame = +3

Query: 201 LFERFKAACKRS--DLDASATLLSQLKVLLTKFPSLPPLFQQTPNAVEELKLAREIYEHA 374
           ++E+ K    R   +L      L +LK++L +   LP     T    ++L LAR+I E  
Sbjct: 1   MYEQLKGEWNRKSPNLSKCGEELGRLKLVLLELNFLPTT--GTKLTKQQLILARDILEIG 58

Query: 375 VLLSVKMEDQDAFERDFCQLKPYYMDTCGILPPSSMEYPIMGLNLLRLL 521
              S+  +D  +FER   QLK YY D    LP S+  + ++GLNLL LL
Sbjct: 59  AQWSILRKDIPSFERYMAQLKCYYFDYKEQLPESAYMHQLLGLNLLFLL 107

>PSD8_MOUSE (Q9CX56) 26S proteasome non-ATPase regulatory subunit 8 (26S|
           proteasome regulatory subunit S14)
          Length = 257

 Score = 51.2 bits (121), Expect = 2e-06
 Identities = 36/98 (36%), Positives = 51/98 (52%)
 Frame = +3

Query: 228 KRSDLDASATLLSQLKVLLTKFPSLPPLFQQTPNAVEELKLAREIYEHAVLLSVKMEDQD 407
           K  +L      L +LK++L +   LP     T    ++L LAR+I E     S+  +D  
Sbjct: 12  KNPNLSKCGEELGRLKLVLLELNFLPTT--GTKLTKQQLILARDILEIGAQWSILCKDIP 69

Query: 408 AFERDFCQLKPYYMDTCGILPPSSMEYPIMGLNLLRLL 521
           +FER   QLK YY D    LP S+  + ++GLNLL LL
Sbjct: 70  SFERYMAQLKCYYFDYKEQLPESAYMHQLLGLNLLFLL 107

>RPN12_YEAST (P32496) 26S proteasome regulatory subunit RPN12 (Nuclear integrity|
           protein 1)
          Length = 274

 Score = 48.1 bits (113), Expect = 1e-05
 Identities = 38/116 (32%), Positives = 54/116 (46%), Gaps = 1/116 (0%)
 Frame = +3

Query: 177 PKLVEVTQLFERFKAACKRSDLDASATLLSQLKVLLTKFPSL-PPLFQQTPNAVEELKLA 353
           P L E+T+       A +  D  A   LL  +K+ L K   L P L  Q    + +L + 
Sbjct: 2   PSLAELTK---SLSIAFENGDYAACEKLLPPIKIELIKNNLLIPDLSIQNDIYLNDLMIT 58

Query: 354 REIYEHAVLLSVKMEDQDAFERDFCQLKPYYMDTCGILPPSSMEYPIMGLNLLRLL 521
           + I E   L S++  + D+FE  F QLKPYY      L  S  +  ++ L LL LL
Sbjct: 59  KRILEVGALASIQTFNFDSFENYFNQLKPYYFSNNHKLSESDKKSKLISLYLLNLL 114

>DSC2_BOVIN (P33545) Desmocollin-2 precursor (Epithelial type 2 desmocollin)|
           (Fragment)
          Length = 863

 Score = 30.8 bits (68), Expect = 2.4
 Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 5/63 (7%)
 Frame = +3

Query: 234 SDLDASATLLSQLKV-LLTKFPSLPPLFQQTPN----AVEELKLAREIYEHAVLLSVKME 398
           +D D   TL ++LK  ++ +FP+LP LF   P          KL RE+ +    L +K++
Sbjct: 222 TDQDEPDTLHTRLKYSIIEQFPALPTLFSMHPTTGVITTSSSKLDRELID-KYQLKIKVQ 280

Query: 399 DQD 407
           D D
Sbjct: 281 DMD 283

>Y1997_XANAC (Q8PL09) UPF0274 protein XAC1997|
          Length = 204

 Score = 29.6 bits (65), Expect = 5.3
 Identities = 30/111 (27%), Positives = 42/111 (37%), Gaps = 14/111 (12%)
 Frame = +2

Query: 8   SPRGGVYTAAALSPPRRSISSYLHRRRREP*IPQTNXXXXXXXXXXXXXXXXDADGSEVG 187
           SP     +AAAL+P  R + +Y   + ++  +P+                   A  +   
Sbjct: 50  SPEAVYGSAAALAPGLRLLHNYFRNQGQDEVLPRLALAVLQLERRFVRDASTVA--TVAS 107

Query: 188 GGDAAVRTLQ--------------GGLQAQRSRRLRDPPLAAQGAPHQVPQ 298
           G DAA R  Q              GGL AQ    LR P +  QG PH + Q
Sbjct: 108 GIDAAARQAQQLGDSSHPDVLGSLGGLYAQTISHLR-PKVMVQGNPHYLGQ 157

>KCNG2_RAT (Q9QYU3) Potassium voltage-gated channel subfamily G member 2|
           (Voltage-gated potassium channel subunit Kv6.2) (Cardiac
           potassium channel subunit)
          Length = 480

 Score = 29.6 bits (65), Expect = 5.3
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = -3

Query: 108 WGI*GSRLLRCKYDEIERRGGESAAAVYTPP 16
           WGI  +RL RC    + RR  E+A A  TPP
Sbjct: 122 WGIDEARLERCCLRRLRRREEEAAEARATPP 152

>ARHG1_RAT (Q9Z1I6) Rho guanine nucleotide exchange factor 1 (Lbc's second|
           cousin)
          Length = 919

 Score = 29.3 bits (64), Expect = 6.9
 Identities = 12/41 (29%), Positives = 24/41 (58%)
 Frame = +3

Query: 354 REIYEHAVLLSVKMEDQDAFERDFCQLKPYYMDTCGILPPS 476
           +E+ E+ + L V ++  +  E +FC+L+P+      IL P+
Sbjct: 866 QEVEENLLSLEVVIKQLEELEEEFCRLRPFLSQLGEILSPN 906

>ARHG1_MOUSE (Q61210) Rho guanine nucleotide exchange factor 1 (Lymphoid blast|
           crisis-like 2) (Lbc's second cousin)
          Length = 920

 Score = 29.3 bits (64), Expect = 6.9
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +3

Query: 354 REIYEHAVLLSVKMEDQDAFERDFCQLKPYYMDTCGILPPS 476
           +EI E+ + L V +   +  E +FC+L+P      G L P+
Sbjct: 867 QEIEENLLSLEVAIRQLEELEEEFCRLRPLLSQLGGTLSPN 907

>CAPP_SYNP6 (P06516) Phosphoenolpyruvate carboxylase (EC 4.1.1.31) (PEPCase)|
            (PEPC)
          Length = 1053

 Score = 29.3 bits (64), Expect = 6.9
 Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
 Frame = +3

Query: 279  LLTKFPSLPPLFQQTPNAVEEL--KLAREIYEHAVLLSVKMEDQDAFERDFCQLKPYYMD 452
            LL  F    P F+   + VE    K+  +I  H V      EDQ+ FER F Q+   +  
Sbjct: 907  LLRYFYEKWPFFRMVISKVEMTLAKVDLQIAHHYVHELANPEDQERFERVFSQIAAEFQL 966

Query: 453  TCGIL 467
            TC ++
Sbjct: 967  TCHLV 971

>HIC1_MOUSE (Q9R1Y5) Hypermethylated in cancer 1 protein (Hic-1)|
          Length = 892

 Score = 28.9 bits (63), Expect = 9.0
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = -3

Query: 69  DEIERRGGESAAAVYTPPLGLCP 1
           + +E RGG+ AA+   PPLGL P
Sbjct: 513 ERLEERGGDPAASPGGPPLGLVP 535


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,313,343
Number of Sequences: 219361
Number of extensions: 946541
Number of successful extensions: 3495
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 3357
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3493
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3985467738
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)