ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart54e05 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_191189.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1338 Score = 280 bits (141), Expect = 5e-72 Identities = 222/249 (89%) Strand = Plus / Plus Query: 297 gcgtccctgccgttcgtggagcggcgcggcgcgcagctcctcctggagggccggccgttc 356 ||||||||||| |||||||||||||||||| || ||| ||||||| |||||||| ||| Sbjct: 148 gcgtccctgcccttcgtggagcggcgcggcaagcgcctcttcctggacggccggcccttc 207 Query: 357 tacatcaacgggtggaactcgtactggctcatggaccacgccgtggagccggcgagccgc 416 ||||||||||||||||||||||||||||||||||||| ||||||||||||| | |||| Sbjct: 208 tacatcaacgggtggaactcgtactggctcatggacctcgccgtggagccgaacacccgc 267 Query: 417 caccgcgtgtccgacatgttccgcgccggcgccgggatgggcctcacggtgtgccgcacc 476 | |||||||||| |||||||||| ||| || | ||||||||||| |||||||||||| Sbjct: 268 ccccgcgtgtccagcatgttccgcaccgccgtctccatgggcctcaccgtgtgccgcacc 327 Query: 477 tgggccttcaacgacggcgcctacaacgcgctccagctctccccggggcacttcgacgag 536 |||||||||||||||||| |||||||||| |||||||||||||| || |||||||||||| Sbjct: 328 tgggccttcaacgacggctcctacaacgccctccagctctcccccggccacttcgacgag 387 Query: 537 cgcgtcttc 545 ||||||||| Sbjct: 388 cgcgtcttc 396 Score = 58.0 bits (29), Expect = 3e-05 Identities = 82/99 (82%), Gaps = 3/99 (3%) Strand = Plus / Plus Query: 153 atggcggcgtgcaacgggctgttcgtgtaccacatcctcggcctggcctccctggtggcc 212 ||||||| | ||||||| ||| || |||||||||||||||| ||||||||| | || Sbjct: 1 atggcggtgggcaacggcctgatcctgtaccacatcctcgggctggcctcctgcatcgcg 60 Query: 213 gtgttctacttctccctcctcggcgaggtggacctccgc 251 || |||||||||| |||||||||||||||||||||| Sbjct: 61 ctggtctacttctc---cctcggcgaggtggacctccgc 96
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 280 bits (141), Expect = 5e-72 Identities = 222/249 (89%) Strand = Plus / Minus Query: 297 gcgtccctgccgttcgtggagcggcgcggcgcgcagctcctcctggagggccggccgttc 356 ||||||||||| |||||||||||||||||| || ||| ||||||| |||||||| ||| Sbjct: 31247847 gcgtccctgcccttcgtggagcggcgcggcaagcgcctcttcctggacggccggcccttc 31247788 Query: 357 tacatcaacgggtggaactcgtactggctcatggaccacgccgtggagccggcgagccgc 416 ||||||||||||||||||||||||||||||||||||| ||||||||||||| | |||| Sbjct: 31247787 tacatcaacgggtggaactcgtactggctcatggacctcgccgtggagccgaacacccgc 31247728 Query: 417 caccgcgtgtccgacatgttccgcgccggcgccgggatgggcctcacggtgtgccgcacc 476 | |||||||||| |||||||||| ||| || | ||||||||||| |||||||||||| Sbjct: 31247727 ccccgcgtgtccagcatgttccgcaccgccgtctccatgggcctcaccgtgtgccgcacc 31247668 Query: 477 tgggccttcaacgacggcgcctacaacgcgctccagctctccccggggcacttcgacgag 536 |||||||||||||||||| |||||||||| |||||||||||||| || |||||||||||| Sbjct: 31247667 tgggccttcaacgacggctcctacaacgccctccagctctcccccggccacttcgacgag 31247608 Query: 537 cgcgtcttc 545 ||||||||| Sbjct: 31247607 cgcgtcttc 31247599 Score = 61.9 bits (31), Expect = 2e-06 Identities = 84/101 (83%), Gaps = 3/101 (2%) Strand = Plus / Minus Query: 151 caatggcggcgtgcaacgggctgttcgtgtaccacatcctcggcctggcctccctggtgg 210 ||||||||| | ||||||| ||| || |||||||||||||||| ||||||||| | | Sbjct: 31247996 caatggcggtgggcaacggcctgatcctgtaccacatcctcgggctggcctcctgcatcg 31247937 Query: 211 ccgtgttctacttctccctcctcggcgaggtggacctccgc 251 | || |||||||||| |||||||||||||||||||||| Sbjct: 31247936 cgctggtctacttctc---cctcggcgaggtggacctccgc 31247899
>dbj|AP003376.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0014K08 Length = 177263 Score = 280 bits (141), Expect = 5e-72 Identities = 222/249 (89%) Strand = Plus / Minus Query: 297 gcgtccctgccgttcgtggagcggcgcggcgcgcagctcctcctggagggccggccgttc 356 ||||||||||| |||||||||||||||||| || ||| ||||||| |||||||| ||| Sbjct: 174192 gcgtccctgcccttcgtggagcggcgcggcaagcgcctcttcctggacggccggcccttc 174133 Query: 357 tacatcaacgggtggaactcgtactggctcatggaccacgccgtggagccggcgagccgc 416 ||||||||||||||||||||||||||||||||||||| ||||||||||||| | |||| Sbjct: 174132 tacatcaacgggtggaactcgtactggctcatggacctcgccgtggagccgaacacccgc 174073 Query: 417 caccgcgtgtccgacatgttccgcgccggcgccgggatgggcctcacggtgtgccgcacc 476 | |||||||||| |||||||||| ||| || | ||||||||||| |||||||||||| Sbjct: 174072 ccccgcgtgtccagcatgttccgcaccgccgtctccatgggcctcaccgtgtgccgcacc 174013 Query: 477 tgggccttcaacgacggcgcctacaacgcgctccagctctccccggggcacttcgacgag 536 |||||||||||||||||| |||||||||| |||||||||||||| || |||||||||||| Sbjct: 174012 tgggccttcaacgacggctcctacaacgccctccagctctcccccggccacttcgacgag 173953 Query: 537 cgcgtcttc 545 ||||||||| Sbjct: 173952 cgcgtcttc 173944 Score = 61.9 bits (31), Expect = 2e-06 Identities = 84/101 (83%), Gaps = 3/101 (2%) Strand = Plus / Minus Query: 151 caatggcggcgtgcaacgggctgttcgtgtaccacatcctcggcctggcctccctggtgg 210 ||||||||| | ||||||| ||| || |||||||||||||||| ||||||||| | | Sbjct: 174341 caatggcggtgggcaacggcctgatcctgtaccacatcctcgggctggcctcctgcatcg 174282 Query: 211 ccgtgttctacttctccctcctcggcgaggtggacctccgc 251 | || |||||||||| |||||||||||||||||||||| Sbjct: 174281 cgctggtctacttctc---cctcggcgaggtggacctccgc 174244
>dbj|AP003076.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0481E12 Length = 161563 Score = 280 bits (141), Expect = 5e-72 Identities = 222/249 (89%) Strand = Plus / Minus Query: 297 gcgtccctgccgttcgtggagcggcgcggcgcgcagctcctcctggagggccggccgttc 356 ||||||||||| |||||||||||||||||| || ||| ||||||| |||||||| ||| Sbjct: 2130 gcgtccctgcccttcgtggagcggcgcggcaagcgcctcttcctggacggccggcccttc 2071 Query: 357 tacatcaacgggtggaactcgtactggctcatggaccacgccgtggagccggcgagccgc 416 ||||||||||||||||||||||||||||||||||||| ||||||||||||| | |||| Sbjct: 2070 tacatcaacgggtggaactcgtactggctcatggacctcgccgtggagccgaacacccgc 2011 Query: 417 caccgcgtgtccgacatgttccgcgccggcgccgggatgggcctcacggtgtgccgcacc 476 | |||||||||| |||||||||| ||| || | ||||||||||| |||||||||||| Sbjct: 2010 ccccgcgtgtccagcatgttccgcaccgccgtctccatgggcctcaccgtgtgccgcacc 1951 Query: 477 tgggccttcaacgacggcgcctacaacgcgctccagctctccccggggcacttcgacgag 536 |||||||||||||||||| |||||||||| |||||||||||||| || |||||||||||| Sbjct: 1950 tgggccttcaacgacggctcctacaacgccctccagctctcccccggccacttcgacgag 1891 Query: 537 cgcgtcttc 545 ||||||||| Sbjct: 1890 cgcgtcttc 1882 Score = 61.9 bits (31), Expect = 2e-06 Identities = 84/101 (83%), Gaps = 3/101 (2%) Strand = Plus / Minus Query: 151 caatggcggcgtgcaacgggctgttcgtgtaccacatcctcggcctggcctccctggtgg 210 ||||||||| | ||||||| ||| || |||||||||||||||| ||||||||| | | Sbjct: 2279 caatggcggtgggcaacggcctgatcctgtaccacatcctcgggctggcctcctgcatcg 2220 Query: 211 ccgtgttctacttctccctcctcggcgaggtggacctccgc 251 | || |||||||||| |||||||||||||||||||||| Sbjct: 2219 cgctggtctacttctc---cctcggcgaggtggacctccgc 2182
>gb|AC134344.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0059K16, complete sequence Length = 139615 Score = 48.1 bits (24), Expect = 0.031 Identities = 48/56 (85%) Strand = Plus / Plus Query: 345 ggccggccgttctacatcaacgggtggaactcgtactggctcatggaccacgccgt 400 ||||||||||||||| | ||||||| ||| |||||||||| |||| || |||||| Sbjct: 99456 ggccggccgttctacgtgaacgggttcaacacgtactggctgatggtcctcgccgt 99511 Score = 42.1 bits (21), Expect = 1.9 Identities = 33/37 (89%) Strand = Plus / Plus Query: 459 ctcacggtgtgccgcacctgggccttcaacgacggcg 495 |||||||| ||||| || ||||| ||||||||||||| Sbjct: 99570 ctcacggtttgccggacgtgggcgttcaacgacggcg 99606
>gb|AC136224.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0006B22, complete sequence Length = 166052 Score = 48.1 bits (24), Expect = 0.031 Identities = 48/56 (85%) Strand = Plus / Plus Query: 345 ggccggccgttctacatcaacgggtggaactcgtactggctcatggaccacgccgt 400 ||||||||||||||| | ||||||| ||| |||||||||| |||| || |||||| Sbjct: 18616 ggccggccgttctacgtgaacgggttcaacacgtactggctgatggtcctcgccgt 18671 Score = 42.1 bits (21), Expect = 1.9 Identities = 33/37 (89%) Strand = Plus / Plus Query: 459 ctcacggtgtgccgcacctgggccttcaacgacggcg 495 |||||||| ||||| || ||||| ||||||||||||| Sbjct: 18730 ctcacggtttgccggacgtgggcgttcaacgacggcg 18766
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 48.1 bits (24), Expect = 0.031 Identities = 48/56 (85%) Strand = Plus / Plus Query: 345 ggccggccgttctacatcaacgggtggaactcgtactggctcatggaccacgccgt 400 ||||||||||||||| | ||||||| ||| |||||||||| |||| || |||||| Sbjct: 14683162 ggccggccgttctacgtgaacgggttcaacacgtactggctgatggtcctcgccgt 14683217 Score = 42.1 bits (21), Expect = 1.9 Identities = 33/37 (89%) Strand = Plus / Plus Query: 459 ctcacggtgtgccgcacctgggccttcaacgacggcg 495 |||||||| ||||| || ||||| ||||||||||||| Sbjct: 14683276 ctcacggtttgccggacgtgggcgttcaacgacggcg 14683312
>gb|AC160469.5| Mus musculus chromosome 5, clone RP23-318I19, complete sequence Length = 221860 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Plus Query: 226 ccctcctcggcgaggtggacctc 248 ||||||||||||||||||||||| Sbjct: 183301 ccctcctcggcgaggtggacctc 183323
>emb|AL606694.3|OSJN00110 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0078D11, complete sequence Length = 115006 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Plus Query: 318 cggcgcggcgcgcagctcctcct 340 ||||||||||||||||||||||| Sbjct: 44916 cggcgcggcgcgcagctcctcct 44938
>gb|BC051118.1| Mus musculus furry homolog-like (Drosophila), mRNA (cDNA clone MGC:59201 IMAGE:5400243), complete cds Length = 5059 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Plus Query: 226 ccctcctcggcgaggtggacctc 248 ||||||||||||||||||||||| Sbjct: 399 ccctcctcggcgaggtggacctc 421
>ref|NM_028194.1| Mus musculus furry homolog-like (Drosophila) (Fryl), mRNA Length = 5059 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Plus Query: 226 ccctcctcggcgaggtggacctc 248 ||||||||||||||||||||||| Sbjct: 399 ccctcctcggcgaggtggacctc 421
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Plus Query: 318 cggcgcggcgcgcagctcctcct 340 ||||||||||||||||||||||| Sbjct: 28158479 cggcgcggcgcgcagctcctcct 28158501
>ref|XM_344235.2| PREDICTED: Rattus norvegicus similar to 2510002A14Rik protein (predicted) (LOC364144), mRNA Length = 9048 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Plus Query: 226 ccctcctcggcgaggtggacctc 248 ||||||||||||||||||||||| Sbjct: 4847 ccctcctcggcgaggtggacctc 4869
>dbj|AB093265.1| Mus musculus mRNA for mKIAA0826 protein Length = 5274 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Plus Query: 226 ccctcctcggcgaggtggacctc 248 ||||||||||||||||||||||| Sbjct: 629 ccctcctcggcgaggtggacctc 651
>gb|AC108848.12| Mus musculus chromosome 5, clone RP23-300K5, complete sequence Length = 231380 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Minus Query: 226 ccctcctcggcgaggtggacctc 248 ||||||||||||||||||||||| Sbjct: 130781 ccctcctcggcgaggtggacctc 130759
>gb|BC103811.1| Homo sapiens potassium channel, subfamily K, member 7, mRNA (cDNA clone IMAGE:40000341), partial cds Length = 910 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Minus Query: 137 gcacaggcagcaggcaatggcg 158 |||||||||||||||||||||| Sbjct: 478 gcacaggcagcaggcaatggcg 457
>gb|BC103810.1| Homo sapiens potassium channel, subfamily K, member 7, transcript variant D, mRNA (cDNA clone MGC:118784 IMAGE:40000339), complete cds Length = 1091 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Minus Query: 137 gcacaggcagcaggcaatggcg 158 |||||||||||||||||||||| Sbjct: 478 gcacaggcagcaggcaatggcg 457
>gb|BC103809.1| Homo sapiens potassium channel, subfamily K, member 7, transcript variant B, mRNA (cDNA clone MGC:118782 IMAGE:40000336), complete cds Length = 985 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Minus Query: 137 gcacaggcagcaggcaatggcg 158 |||||||||||||||||||||| Sbjct: 479 gcacaggcagcaggcaatggcg 458
>ref|NM_033456.1| Homo sapiens potassium channel, subfamily K, member 7 (KCNK7), transcript variant E, mRNA Length = 1478 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Minus Query: 137 gcacaggcagcaggcaatggcg 158 |||||||||||||||||||||| Sbjct: 666 gcacaggcagcaggcaatggcg 645
>ref|NM_033455.1| Homo sapiens potassium channel, subfamily K, member 7 (KCNK7), transcript variant D, mRNA Length = 1485 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Minus Query: 137 gcacaggcagcaggcaatggcg 158 |||||||||||||||||||||| Sbjct: 666 gcacaggcagcaggcaatggcg 645
>ref|NM_033348.1| Homo sapiens potassium channel, subfamily K, member 7 (KCNK7), transcript variant B, mRNA Length = 1388 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Minus Query: 137 gcacaggcagcaggcaatggcg 158 |||||||||||||||||||||| Sbjct: 666 gcacaggcagcaggcaatggcg 645
>ref|NM_033347.1| Homo sapiens potassium channel, subfamily K, member 7 (KCNK7), transcript variant A, mRNA Length = 1312 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Minus Query: 137 gcacaggcagcaggcaatggcg 158 |||||||||||||||||||||| Sbjct: 666 gcacaggcagcaggcaatggcg 645
>ref|NM_005714.1| Homo sapiens potassium channel, subfamily K, member 7 (KCNK7), transcript variant C, mRNA Length = 1577 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Minus Query: 137 gcacaggcagcaggcaatggcg 158 |||||||||||||||||||||| Sbjct: 666 gcacaggcagcaggcaatggcg 645
>ref|XM_806743.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053506567.10) partial mRNA Length = 906 Score = 44.1 bits (22), Expect = 0.48 Identities = 25/26 (96%) Strand = Plus / Minus Query: 417 caccgcgtgtccgacatgttccgcgc 442 |||||| ||||||||||||||||||| Sbjct: 780 caccgcctgtccgacatgttccgcgc 755
>ref|XM_811323.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053507049.10) partial mRNA Length = 906 Score = 44.1 bits (22), Expect = 0.48 Identities = 25/26 (96%) Strand = Plus / Minus Query: 417 caccgcgtgtccgacatgttccgcgc 442 |||||| ||||||||||||||||||| Sbjct: 780 caccgcttgtccgacatgttccgcgc 755
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 44.1 bits (22), Expect = 0.48 Identities = 58/70 (82%) Strand = Plus / Plus Query: 451 ggatgggcctcacggtgtgccgcacctgggccttcaacgacggcgcctacaacgcgctcc 510 ||||||| ||| | || |||||||||||||| |||| |||||||| | | |||||||| Sbjct: 11720709 ggatggggctctccgtctgccgcacctgggcgttcagcgacggcggccccggcgcgctcc 11720768 Query: 511 agctctcccc 520 || ||||||| Sbjct: 11720769 agatctcccc 11720778
>dbj|AP004583.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBb0005N06 Length = 140639 Score = 44.1 bits (22), Expect = 0.48 Identities = 58/70 (82%) Strand = Plus / Plus Query: 451 ggatgggcctcacggtgtgccgcacctgggccttcaacgacggcgcctacaacgcgctcc 510 ||||||| ||| | || |||||||||||||| |||| |||||||| | | |||||||| Sbjct: 69251 ggatggggctctccgtctgccgcacctgggcgttcagcgacggcggccccggcgcgctcc 69310 Query: 511 agctctcccc 520 || ||||||| Sbjct: 69311 agatctcccc 69320
>gb|AF110524.1|AF110524 Homo sapiens two pore domain K+ channel subunit C mRNA, complete cds Length = 1577 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Minus Query: 137 gcacaggcagcaggcaatggcg 158 |||||||||||||||||||||| Sbjct: 666 gcacaggcagcaggcaatggcg 645
>gb|AF110523.1|AF110523 Homo sapiens two pore domain K+ channel subunit B mRNA, complete cds Length = 1388 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Minus Query: 137 gcacaggcagcaggcaatggcg 158 |||||||||||||||||||||| Sbjct: 666 gcacaggcagcaggcaatggcg 645
>gb|AF110522.1|AF110522 Homo sapiens two pore domain K+ channel subunit A mRNA, complete cds Length = 1312 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Minus Query: 137 gcacaggcagcaggcaatggcg 158 |||||||||||||||||||||| Sbjct: 666 gcacaggcagcaggcaatggcg 645
>dbj|AP001362.5| Homo sapiens genomic DNA, chromosome 11, clone:RP11-856B14, complete sequence Length = 211382 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Plus Query: 137 gcacaggcagcaggcaatggcg 158 |||||||||||||||||||||| Sbjct: 74363 gcacaggcagcaggcaatggcg 74384
>ref|NM_118972.3| Arabidopsis thaliana hydrolase, hydrolyzing O-glycosyl compounds AT4G28320 mRNA, complete cds Length = 1651 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Plus Query: 366 gggtggaactcgtactggctcatggacca 394 |||||||||||||| ||| |||||||||| Sbjct: 423 gggtggaactcgtattggttcatggacca 451
>ref|XM_530574.1| PREDICTED: Pan troglodytes LOC460114 (LOC460114), mRNA Length = 1013 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 222 ttctccctcctcggcgaggtg 242 ||||||||||||||||||||| Sbjct: 254 ttctccctcctcggcgaggtg 274
>ref|NM_031847.2| Homo sapiens microtubule-associated protein 2 (MAP2), transcript variant 4, mRNA Length = 5470 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 222 ttctccctcctcggcgaggtg 242 ||||||||||||||||||||| Sbjct: 820 ttctccctcctcggcgaggtg 840
>ref|NM_031845.2| Homo sapiens microtubule-associated protein 2 (MAP2), transcript variant 2, mRNA Length = 5377 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 222 ttctccctcctcggcgaggtg 242 ||||||||||||||||||||| Sbjct: 820 ttctccctcctcggcgaggtg 840
>ref|NM_001039538.1| Homo sapiens microtubule-associated protein 2 (MAP2), transcript variant 5, mRNA Length = 5844 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 222 ttctccctcctcggcgaggtg 242 ||||||||||||||||||||| Sbjct: 1194 ttctccctcctcggcgaggtg 1214
>ref|NM_002374.3| Homo sapiens microtubule-associated protein 2 (MAP2), transcript variant 1, mRNA Length = 9445 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 222 ttctccctcctcggcgaggtg 242 ||||||||||||||||||||| Sbjct: 4888 ttctccctcctcggcgaggtg 4908
>gb|BC038857.1| Homo sapiens microtubule-associated protein 2, transcript variant 5, mRNA (cDNA clone IMAGE:5223046), complete cds Length = 2286 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 222 ttctccctcctcggcgaggtg 242 ||||||||||||||||||||| Sbjct: 1183 ttctccctcctcggcgaggtg 1203
>gb|BC027583.1| Homo sapiens microtubule-associated protein 2, mRNA (cDNA clone IMAGE:4837202), complete cds Length = 1870 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 222 ttctccctcctcggcgaggtg 242 ||||||||||||||||||||| Sbjct: 892 ttctccctcctcggcgaggtg 912
>emb|AL161572.2|ATCHRIV68 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 68 Length = 199749 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Minus Query: 366 gggtggaactcgtactggctcatggacca 394 |||||||||||||| ||| |||||||||| Sbjct: 135278 gggtggaactcgtattggttcatggacca 135250
>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome Length = 7074893 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 190 tcggcctggcctccctggtgg 210 ||||||||||||||||||||| Sbjct: 3277817 tcggcctggcctccctggtgg 3277837
>gb|U34065.1|HSMAP14 Human microtubule-associated protein-2 (MAP-2) gene, exon 14 Length = 149 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 222 ttctccctcctcggcgaggtg 242 ||||||||||||||||||||| Sbjct: 56 ttctccctcctcggcgaggtg 76
>emb|BX829247.1|CNS0A3IM Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL84ZB04 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1601 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Plus Query: 366 gggtggaactcgtactggctcatggacca 394 |||||||||||||| ||| |||||||||| Sbjct: 424 gggtggaactcgtattggttcatggacca 452
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 461 cacggtgtgccgcacctgggc 481 ||||||||||||||||||||| Sbjct: 7250019 cacggtgtgccgcacctgggc 7250039 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 320 gcgcggcgcgcagctcctcctgga 343 |||||||||||||| ||||||||| Sbjct: 8551992 gcgcggcgcgcagcgcctcctgga 8551969
>gb|AC006385.3|AC006385 Homo sapiens BAC clone RP11-559J5 from 2, complete sequence Length = 173508 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 222 ttctccctcctcggcgaggtg 242 ||||||||||||||||||||| Sbjct: 22542 ttctccctcctcggcgaggtg 22562
>gb|U89330.1|HSU89330 Human alternatively spliced microtubule-associated protein 2 (MAP2) mRNA, complete cds Length = 5595 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 222 ttctccctcctcggcgaggtg 242 ||||||||||||||||||||| Sbjct: 4628 ttctccctcctcggcgaggtg 4648
>gb|U89329.1|HSU89329 Human alternatively spliced microtubule-associated protein 2C (MAP2) mRNA, complete cds Length = 1539 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 222 ttctccctcctcggcgaggtg 242 ||||||||||||||||||||| Sbjct: 572 ttctccctcctcggcgaggtg 592
>dbj|AB209330.1| Homo sapiens mRNA for microtubule-associated protein 2 isoform 2 variant protein Length = 2547 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 222 ttctccctcctcggcgaggtg 242 ||||||||||||||||||||| Sbjct: 738 ttctccctcctcggcgaggtg 758
>gb|M25668.1|HUMMAP2A Human microtubule associated protein 2 (MAP2) mRNA, partial sequence Length = 3206 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 222 ttctccctcctcggcgaggtg 242 ||||||||||||||||||||| Sbjct: 3161 ttctccctcctcggcgaggtg 3181
>gb|U10467.1|TAU10467 Triticum aestivum Chinese spring bZIP protein (EmBP-1a) mRNA, partial cds Length = 945 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 402 gagccggcgagccgccaccgc 422 ||||||||||||||||||||| Sbjct: 36 gagccggcgagccgccaccgc 56
>gb|U01828.1|HSU01828 Human microtubule-associated protein 2 (MAP2) mRNA, complete cds Length = 5968 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 222 ttctccctcctcggcgaggtg 242 ||||||||||||||||||||| Sbjct: 4888 ttctccctcctcggcgaggtg 4908
>ref|NM_197562.1| Oryza sativa (japonica cultivar-group) putative nucleoid DNA binding protein (OSJNBa0040D23.21), mRNA Length = 1194 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 48 ccgccttcttgaagcagagg 67 |||||||||||||||||||| Sbjct: 919 ccgccttcttgaagcagagg 900
>ref|NM_197560.1| Oryza sativa (japonica cultivar-group) putative nucleoid DNA binding protein (OSJNBa0040D23.19), mRNA Length = 1242 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 48 ccgccttcttgaagcagagg 67 |||||||||||||||||||| Sbjct: 970 ccgccttcttgaagcagagg 951
>ref|XM_415323.1| PREDICTED: Gallus gallus similar to hypothetical protein FLJ14827 (LOC417034), partial mRNA Length = 1425 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 4 ccagacatcccactccacta 23 |||||||||||||||||||| Sbjct: 918 ccagacatcccactccacta 899
>gb|AY452461.1| Ptychomnion cygnisetum voucher Holz & Franzaring CH 00-72 (NY) large ribosomal RNA subunit gene, partial sequence Length = 1126 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 310 tcgtggagcggcgcggcgcg 329 |||||||||||||||||||| Sbjct: 216 tcgtggagcggcgcggcgcg 197
>gb|AY452434.1| Euptychium robustum voucher Streimann 56137 (NY) large ribosomal RNA subunit gene, partial sequence Length = 1126 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 310 tcgtggagcggcgcggcgcg 329 |||||||||||||||||||| Sbjct: 216 tcgtggagcggcgcggcgcg 197
>gb|AY452418.1| Cladomnion ericoides voucher Streimann 51478 (NY) large ribosomal RNA subunit gene, partial sequence Length = 1057 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 310 tcgtggagcggcgcggcgcg 329 |||||||||||||||||||| Sbjct: 187 tcgtggagcggcgcggcgcg 168
>gb|AY386265.1| Bovine papular stomatitis virus strain BV-AR02, complete genome Length = 134431 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 317 gcggcgcggcgcgcagctcc 336 |||||||||||||||||||| Sbjct: 67809 gcggcgcggcgcgcagctcc 67828
>ref|XM_532743.2| PREDICTED: Canis familiaris similar to ephrin receptor EphB6 precursor (LOC475519), mRNA Length = 3252 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 309 ttcgtggagcggcgcggcgcgcag 332 ||||||||||||||||| |||||| Sbjct: 280 ttcgtggagcggcgcggggcgcag 303
>emb|AL939115.1|SCO939115 Streptomyces coelicolor A3(2) complete genome; segment 12/29 Length = 276800 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 321 cgcggcgcgcagctcctcct 340 |||||||||||||||||||| Sbjct: 153589 cgcggcgcgcagctcctcct 153570
>emb|AL591985.1|RME591985 Sinorhizobium meliloti 1021 complete pSymB Length = 1683333 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 247 tccgctttcccggcctcctc 266 |||||||||||||||||||| Sbjct: 916715 tccgctttcccggcctcctc 916734
>emb|AJ400877.1|HSA400877 Homo sapiens ASCL3 gene, CEGP1 gene, C11orf14 gene, C11orf15 gene, C11orf16 gene and C11orf17 gene Length = 256164 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 255 cccggcctcctcccgtcccc 274 |||||||||||||||||||| Sbjct: 18333 cccggcctcctcccgtcccc 18314
>gb|AC074196.14| Oryza sativa chromosome 10 BAC OSJNBa0040D23 genomic sequence, complete sequence Length = 134102 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 48 ccgccttcttgaagcagagg 67 |||||||||||||||||||| Sbjct: 115708 ccgccttcttgaagcagagg 115689 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 48 ccgccttcttgaagcagagg 67 |||||||||||||||||||| Sbjct: 104989 ccgccttcttgaagcagagg 104970
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 437 ccgcgccggcgccgggatgg 456 |||||||||||||||||||| Sbjct: 2063774 ccgcgccggcgccgggatgg 2063755
>emb|BX470158.9| Zebrafish DNA sequence from clone CH211-113P5 in linkage group 8, complete sequence Length = 119483 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 198 gcctccctggtggccgtgtt 217 |||||||||||||||||||| Sbjct: 96699 gcctccctggtggccgtgtt 96718
>emb|CR385236.1| Gallus gallus finished cDNA, clone ChEST548m18 Length = 1365 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 4 ccagacatcccactccacta 23 |||||||||||||||||||| Sbjct: 855 ccagacatcccactccacta 836
>gb|AF323118.1|AF323118 Sinorhizobium meliloti regulator NitR gene, complete cds Length = 820 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 247 tccgctttcccggcctcctc 266 |||||||||||||||||||| Sbjct: 531 tccgctttcccggcctcctc 512
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 270 tcccccggcgcgtccccgtcccac 293 ||||||| |||||||||||||||| Sbjct: 24105877 tcccccgccgcgtccccgtcccac 24105854
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 48 ccgccttcttgaagcagagg 67 |||||||||||||||||||| Sbjct: 20475560 ccgccttcttgaagcagagg 20475541 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 48 ccgccttcttgaagcagagg 67 |||||||||||||||||||| Sbjct: 20464841 ccgccttcttgaagcagagg 20464822
>gb|AC079296.5| Homo sapiens chromosome 11, clone RP11-467K18, complete sequence Length = 194686 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 255 cccggcctcctcccgtcccc 274 |||||||||||||||||||| Sbjct: 88893 cccggcctcctcccgtcccc 88874
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 404 gccggcgagccgccaccgcg 423 |||||||||||||||||||| Sbjct: 2894890 gccggcgagccgccaccgcg 2894909 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 439 gcgccggcgccgggatgggc 458 |||||||||||||||||||| Sbjct: 2700815 gcgccggcgccgggatgggc 2700796
>dbj|AK107573.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-130-D05, full insert sequence Length = 1204 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 52 cttcttgaagcagaggctcc 71 |||||||||||||||||||| Sbjct: 445 cttcttgaagcagaggctcc 464
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 48 ccgccttcttgaagcagagg 67 |||||||||||||||||||| Sbjct: 20486832 ccgccttcttgaagcagagg 20486813 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 48 ccgccttcttgaagcagagg 67 |||||||||||||||||||| Sbjct: 20476113 ccgccttcttgaagcagagg 20476094
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 270 tcccccggcgcgtccccgtcccac 293 ||||||| |||||||||||||||| Sbjct: 24034083 tcccccgccgcgtccccgtcccac 24034060
>emb|AL772418.4|CNS08C9W Oryza sativa chromosome 12, . Partial sequence from BAC OJ1473_A04 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 32463 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 270 tcccccggcgcgtccccgtcccac 293 ||||||| |||||||||||||||| Sbjct: 20951 tcccccgccgcgtccccgtcccac 20928
>dbj|AB070944.1| Streptomyces avermitilis polyketide-4 biosynthetic gene cluster Length = 19601 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 320 gcgcggcgcgcagctcctcctgga 343 |||||||||||||| ||||||||| Sbjct: 3932 gcgcggcgcgcagcgcctcctgga 3909 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,788,101 Number of Sequences: 3902068 Number of extensions: 3788101 Number of successful extensions: 84782 Number of sequences better than 10.0: 76 Number of HSP's better than 10.0 without gapping: 76 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 83229 Number of HSP's gapped (non-prelim): 1549 length of query: 549 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 526 effective length of database: 17,143,297,704 effective search space: 9017374592304 effective search space used: 9017374592304 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
