Clone Information

BLAST Search Result

Clone Name	bart54e04
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	AIR12_ARATH (Q94BT2) Auxin-induced in root cultures protein 12 p...	105	1e-22
2	TEGU_EBV (P03186) Large tegument protein	34	0.28
3	ABI2_HUMAN (Q9NYB9) Abl interactor 2 (Abelson interactor 2) (Abi...	34	0.28
4	RA51B_HUMAN (O15315) DNA repair protein RAD51 homolog 2 (R51H2) ...	32	0.81
5	ACON_COREF (Q8FTA8) Aconitate hydratase (EC 4.2.1.3)	32	1.1
6	ACON_CORGL (Q8NQ98) Aconitate hydratase (EC 4.2.1.3)	32	1.1
7	AP180_RAT (Q05140) Clathrin coat assembly protein AP180 (Clathri...	32	1.4
8	TISD_MOUSE (P23949) Butyrate response factor 2 (TIS11D protein)	31	1.8
9	T22D2_HUMAN (O75157) TSC22 domain family protein 2 (TSC22-relate...	31	1.8
10	LDB3_MOUSE (Q9JKS4) LIM domain-binding protein 3 (Z-band alterna...	31	1.8
11	ACLY_CAEEL (P53585) Probable ATP-citrate synthase (EC 2.3.3.8) (...	30	3.1
12	IF2_XANCP (Q8P7U7) Translation initiation factor IF-2	30	3.1
13	IF2_XANC8 (Q4UWA2) Translation initiation factor IF-2	30	3.1
14	STK39_RAT (O88506) STE20/SPS1-related proline-alanine-rich prote...	30	3.1
15	STE20_YEAST (Q03497) Serine/threonine-protein kinase STE20 (EC 2...	30	3.1
16	UNG_PRVKA (P52507) Uracil-DNA glycosylase (EC 3.2.2.-) (UDG)	30	3.1
17	CHEB1_PSEAE (O87125) Chemotaxis response regulator protein-gluta...	30	3.1
18	MK07_MOUSE (Q9WVS8) Mitogen-activated protein kinase 7 (EC 2.7.1...	30	4.0
19	ACON_CORJK (Q4JVM4) Aconitate hydratase (EC 4.2.1.3)	30	4.0
20	CPO_DROME (Q01617) Protein couch potato	30	4.0
21	CDSN_PIG (O19084) Corneodesmosin (S protein) (Fragment)	30	4.0
22	GP149_CHICK (Q9DDD1) Probable G-protein coupled receptor 149 (G-...	30	4.0
23	MYC2_MARMO (P20389) N-myc 2 proto-oncogene protein	30	5.3
24	VP40_HHV11 (P10210) Capsid protein P40 (Virion structural protei...	30	5.3
25	AP180_MOUSE (Q61548) Clathrin coat assembly protein AP180 (Clath...	30	5.3
26	SAX1_CHICK (P19601) Homeobox protein SAX-1 (CHOX-3) (Fragment)	30	5.3
27	NCOA6_MOUSE (Q9JL19) Nuclear receptor coactivator 6 (Amplified i...	30	5.3
28	DNAA_BURPS (Q63YW5) Chromosomal replication initiator protein dnaA	30	5.3
29	VGP3_EBVP3 (P68344) Envelope glycoprotein GP340 (Membrane antige...	30	5.3
30	VGP3_EBVA8 (P68343) Envelope glycoprotein GP340 (Membrane antige...	30	5.3
31	IF2_BRUSU (Q8FXT2) Translation initiation factor IF-2	30	5.3
32	IF2_BRUME (Q8YEB3) Translation initiation factor IF-2	30	5.3
33	IF2_BRUAB (Q57AA0) Translation initiation factor IF-2	30	5.3
34	IF2_BRUA2 (Q2YQR7) Translation initiation factor IF-2	30	5.3
35	ACON_CORDI (Q6NH63) Aconitate hydratase (EC 4.2.1.3)	30	5.3
36	PROB_SYNY3 (P73071) Glutamate 5-kinase (EC 2.7.2.11) (Gamma-glut...	30	5.3
37	EF1A_RHYAM (P27634) Elongation factor 1-alpha (EF-1-alpha) (Frag...	30	5.3
38	TAF4_HUMAN (O00268) Transcription initiation factor TFIID subuni...	29	6.9
39	ICP0_HHV2H (P28284) Trans-acting transcriptional protein ICP0 (V...	29	6.9
40	PICA_CAEEL (Q9XZI6) Phosphatidylinositol-binding clathrin assemb...	29	6.9
41	STK39_MOUSE (Q9Z1W9) STE20/SPS1-related proline-alanine-rich pro...	29	6.9
42	SPEG_BRARE (Q696W0) Striated muscle preferentially expressed pro...	29	6.9
43	CPN_DROME (Q02910) Calphotin	29	6.9
44	COG5_HUMAN (Q9UP83) Conserved oligomeric Golgi complex component...	29	6.9
45	VP40_EBV (P03234) Capsid protein P40 (Virion structural protein ...	29	6.9
46	RCOR1_HUMAN (Q9UKL0) REST corepressor 1 (Protein CoREST)	29	9.0
47	CUTL1_HUMAN (P39880) Homeobox protein cut-like 1 (CCAAT displace...	29	9.0
48	PRGR_CANFA (Q9GLW0) Progesterone receptor (PR)	29	9.0
49	TRAC_RHISN (P55419) Probable conjugal transfer protein traC	29	9.0

>AIR12_ARATH (Q94BT2) Auxin-induced in root cultures protein 12 precursor|
          Length = 252

 Score =  105 bits (261), Expect = 1e-22
 Identities = 54/100 (54%), Positives = 70/100 (70%), Gaps = 1/100 (1%)
 Frame = +3

Query: 222 YAKCEDLPQLGAALHWTYDESKSSLSLAFVAAPAGANG-WVAWALNPTGEGMAGAQALVA 398
           +  CEDLP L + LH+TY+ S SSLS+AFVA P+ ANG WVAWA+NPTG  MAG+QA +A
Sbjct: 40  FDSCEDLPVLNSYLHYTYNSSNSSLSVAFVATPSQANGGWVAWAINPTGTKMAGSQAFLA 99

Query: 399 LKGSGAAAPTVRTYNITGYVPLGKASTPIAFPATDLAADS 518
            +  G AAP V+TYNI+ Y  L +    +AF   +L A+S
Sbjct: 100 YRSGGGAAPVVKTYNISSYSSLVEGK--LAFDFWNLRAES 137

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>TEGU_EBV (P03186) Large tegument protein|
          Length = 3149

 Score = 33.9 bits (76), Expect = 0.28
 Identities = 23/83 (27%), Positives = 35/83 (42%), Gaps = 7/83 (8%)
 Frame = -3

Query: 520 PESAARSVAGNAMGVEALPSGT*PVMLYVLTVGAAAPEPLSATSACAPAMPSPV------ 359
           P S A +   +A    A P+   P      +   A+  P SA  A +P +  P+      
Sbjct: 332 PSSPASAAPASAAPASAAPASAAPASAAPASAAPASAAPASAAPASSPPLFIPIPGLGHT 391

Query: 358 -GLSAQATHPLAPAGAATNASER 293
            G+ A +T P A +GAA    +R
Sbjct: 392 PGVPAPSTPPRASSGAAPQTPKR 414

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>ABI2_HUMAN (Q9NYB9) Abl interactor 2 (Abelson interactor 2) (Abi-2)|
           (Abl-binding protein 3) (AblBP3) (Arg-binding protein 1)
           (ArgBP1)
          Length = 513

 Score = 33.9 bits (76), Expect = 0.28
 Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
 Frame = -3

Query: 514 SAARSVAGN-AMGVEALPSGT*PVMLYVLTVGAAAPEPLSATSACAPAMPSPVGLSAQAT 338
           S++R  +G+ ++GV        P  ++    G+A   PL ATSA APA   P  + + +T
Sbjct: 256 SSSRENSGSGSVGVPIAVPTPSPPSVFPAPAGSAGTPPLPATSASAPAPLVPATVPS-ST 314

Query: 337 HPLAPAGAATNASE 296
            P A AG A N ++
Sbjct: 315 APNAAAGGAPNLAD 328

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>RA51B_HUMAN (O15315) DNA repair protein RAD51 homolog 2 (R51H2) (RAD51-like|
           protein 1) (Rad51B)
          Length = 384

 Score = 32.3 bits (72), Expect = 0.81
 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 6/57 (10%)
 Frame = -3

Query: 388 ACAPAMPSPVGLSAQATHPLAPAGAATNASERDDLDSS*VQC------SAAPSCGRS 236
           ACAP M +  G+ AQ +   +PA  +T  S  D+     V C      +  P CG++
Sbjct: 59  ACAPKMQTAYGIKAQRSADFSPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKT 115

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>ACON_COREF (Q8FTA8) Aconitate hydratase (EC 4.2.1.3)|
          Length = 937

 Score = 32.0 bits (71), Expect = 1.1
 Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
 Frame = +3

Query: 363 GEGMAGAQALVALKGSGAAA--PTVRTYNITGYVPLGKASTPIAFPATDLAADSG 521
           G G+ G +A  A+ G   +   P V  + +TG +P+G  +T +    T++  D G
Sbjct: 218 GWGVGGIEAEAAMLGQPVSMLIPRVVGFKLTGEIPVGVTATDVVLTITEMLRDHG 272

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>ACON_CORGL (Q8NQ98) Aconitate hydratase (EC 4.2.1.3)|
          Length = 939

 Score = 32.0 bits (71), Expect = 1.1
 Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
 Frame = +3

Query: 363 GEGMAGAQALVALKGSGAAA--PTVRTYNITGYVPLGKASTPIAFPATDLAADSG 521
           G G+ G +A  A+ G   +   P V  + +TG +P+G  +T +    T++  D G
Sbjct: 218 GWGVGGIEAEAAMLGQPVSMLIPRVVGFKLTGEIPVGVTATDVVLTITEMLRDHG 272

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>AP180_RAT (Q05140) Clathrin coat assembly protein AP180 (Clathrin|
           coat-associated protein AP180) (91 kDa
           synaptosomal-associated protein)
          Length = 915

 Score = 31.6 bits (70), Expect = 1.4
 Identities = 28/108 (25%), Positives = 47/108 (43%), Gaps = 4/108 (3%)
 Frame = -3

Query: 520 PESAARSVAGNAMGVEALPSGT*PVMLYVLTVGAAAPE-PLSATSACAPAMPSPVGLSAQ 344
           P +     + +A    A+ + T  V L+     A+  E P ++  A APA P+PV  +  
Sbjct: 409 PTTTTEPASASASATTAVTAATTEVDLFGDAFAASPGEAPAASEGATAPATPAPVAAALD 468

Query: 343 A---THPLAPAGAATNASERDDLDSS*VQCSAAPSCGRSSHLAYVFPA 209
           A     P AP+  +  A+   DL +     ++AP    ++  A   PA
Sbjct: 469 ACSGNDPFAPSEGSAEAAPELDLFAMKPPETSAPVVTPTASTAPPVPA 516

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>TISD_MOUSE (P23949) Butyrate response factor 2 (TIS11D protein)|
          Length = 367

 Score = 31.2 bits (69), Expect = 1.8
 Identities = 27/102 (26%), Positives = 41/102 (40%), Gaps = 8/102 (7%)
 Frame = -3

Query: 502 SVAGNAMGVEALPSGT*PVMLYVLTVGAAAPEPLSATSACAPAMPSPVGLSAQATHPLAP 323
           S +G   G    P G    +L         P P S+ S+C+ +  S    SA +T   AP
Sbjct: 234 SFSGFPSGHHQPPGGLESPLLLDSPTSRTPPPPSSSASSCSSSASSCSSASAASTPSGAP 293

Query: 322 AGAATNASE--------RDDLDSS*VQCSAAPSCGRSSHLAY 221
              AT A+          +DL S    C++  S G ++  A+
Sbjct: 294 TCCATAAAAALLYGPGGAEDLLSPGAPCASCSSSGANNAFAF 335

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>T22D2_HUMAN (O75157) TSC22 domain family protein 2 (TSC22-related-inducible|
           leucine zipper protein 4)
          Length = 780

 Score = 31.2 bits (69), Expect = 1.8
 Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
 Frame = -3

Query: 520 PESAARSVAGNAMGVEALPSGT*PVMLYVLTVGAAAPEP----LSATSACAPAMPSPVGL 353
           P+S      G +  + A+P G   V+  V  V AA P P    +S TS   P +P+P+  
Sbjct: 478 PQSVPPPQMGGSGPLSAVPGGPHAVVPGVPNVPAAVPAPSVPSVSTTSVTMPNVPAPLAQ 537

Query: 352 SAQ 344
           S Q
Sbjct: 538 SQQ 540

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>LDB3_MOUSE (Q9JKS4) LIM domain-binding protein 3 (Z-band alternatively spliced|
           PDZ-motif protein) (Protein cypher) (Protein oracle)
          Length = 723

 Score = 31.2 bits (69), Expect = 1.8
 Identities = 26/72 (36%), Positives = 33/72 (45%), Gaps = 7/72 (9%)
 Frame = -3

Query: 415 APEPLSATSACAPAMPSPVGLS-----AQATHPLA--PAGAATNASERDDLDSS*VQCSA 257
           A  PL   SA +PA  SP+  S     A ATH  A   AG A +  E     +S    +A
Sbjct: 309 ATSPLLPASAQSPAAASPIAASPTLATAAATHAAAASAAGPAASPVENPRPQASAYSPAA 368

Query: 256 APSCGRSSHLAY 221
           A S   S+H +Y
Sbjct: 369 AASPAPSAHTSY 380

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>ACLY_CAEEL (P53585) Probable ATP-citrate synthase (EC 2.3.3.8) (ATP-citrate|
           (pro-S-)-lyase) (Citrate cleavage enzyme)
          Length = 1106

 Score = 30.4 bits (67), Expect = 3.1
 Identities = 20/67 (29%), Positives = 28/67 (41%)
 Frame = -3

Query: 520 PESAARSVAGNAMGVEALPSGT*PVMLYVLTVGAAAPEPLSATSACAPAMPSPVGLSAQA 341
           PE+   ++ G A+GV+ +P+    V     T G     P   T     A PSP   +   
Sbjct: 419 PETHMTAIVGAALGVKPMPT----VPTAPQTTGQFLLSPERNTGGTERAPPSPAANATPT 474

Query: 340 THPLAPA 320
            HPL  A
Sbjct: 475 EHPLTTA 481

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>IF2_XANCP (Q8P7U7) Translation initiation factor IF-2|
          Length = 916

 Score = 30.4 bits (67), Expect = 3.1
 Identities = 18/37 (48%), Positives = 21/37 (56%)
 Frame = -3

Query: 421 AAAPEPLSATSACAPAMPSPVGLSAQATHPLAPAGAA 311
           AAAP P SA +A AP+ PS       A  P  PAGA+
Sbjct: 204 AAAPAPSSAPAARAPSSPS------SAPRPARPAGAS 234

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>IF2_XANC8 (Q4UWA2) Translation initiation factor IF-2|
          Length = 902

 Score = 30.4 bits (67), Expect = 3.1
 Identities = 18/37 (48%), Positives = 21/37 (56%)
 Frame = -3

Query: 421 AAAPEPLSATSACAPAMPSPVGLSAQATHPLAPAGAA 311
           AAAP P SA +A AP+ PS       A  P  PAGA+
Sbjct: 190 AAAPAPSSAPAARAPSSPS------SAPRPARPAGAS 220

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>STK39_RAT (O88506) STE20/SPS1-related proline-alanine-rich protein kinase (EC|
           2.7.11.1) (Ste-20-related kinase)
           (Serine/threonine-protein kinase 39) (Pancreatic
           serine/threonine-protein kinase) (PS/TK) (PSTK1)
          Length = 553

 Score = 30.4 bits (67), Expect = 3.1
 Identities = 18/50 (36%), Positives = 21/50 (42%)
 Frame = -3

Query: 469 LPSGT*PVMLYVLTVGAAAPEPLSATSACAPAMPSPVGLSAQATHPLAPA 320
           LP    PV        AA   P  A +  APA P+P   +A A  P A A
Sbjct: 13  LPQQAAPVTAAAAAPAAATSAPAPAPAPAAPAAPAPAPAAAPAPAPAAQA 62



 Score = 30.0 bits (66), Expect = 4.0
 Identities = 22/42 (52%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
 Frame = -3

Query: 427 VGAAAPEPLSATSACAPAMPSPVGLSAQATHPL---APAGAA 311
           V AAA  P +ATSA APA P+P   +A A  P    APA AA
Sbjct: 20  VTAAAAAPAAATSAPAPA-PAPAAPAAPAPAPAAAPAPAPAA 60

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>STE20_YEAST (Q03497) Serine/threonine-protein kinase STE20 (EC 2.7.11.1)|
          Length = 939

 Score = 30.4 bits (67), Expect = 3.1
 Identities = 19/47 (40%), Positives = 23/47 (48%)
 Frame = -3

Query: 415 APEPLSATSACAPAMPSPVGLSAQATHPLAPAGAATNASERDDLDSS 275
           AP+P S+ SA AP + SPV  SA    PL    A T  +      SS
Sbjct: 476 APKPPSSASASAPIIKSPVMNSAANVSPLKQTHAPTTPNRTSPNRSS 522

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>UNG_PRVKA (P52507) Uracil-DNA glycosylase (EC 3.2.2.-) (UDG)|
          Length = 316

 Score = 30.4 bits (67), Expect = 3.1
 Identities = 21/55 (38%), Positives = 27/55 (49%)
 Frame = -3

Query: 466 PSGT*PVMLYVLTVGAAAPEPLSATSACAPAMPSPVGLSAQATHPLAPAGAATNA 302
           P G  P +  V+   AAA    +AT+A A A   P G  A A+ P  P+ AA  A
Sbjct: 10  PCGLPPGVRLVVPAAAAASASNAATAAAAAA---PAGAGAGASKPARPSAAARPA 61

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>CHEB1_PSEAE (O87125) Chemotaxis response regulator protein-glutamate|
           methylesterase of group 1 operon (EC 3.1.1.61)
          Length = 368

 Score = 30.4 bits (67), Expect = 3.1
 Identities = 16/40 (40%), Positives = 25/40 (62%)
 Frame = -3

Query: 412 PEPLSATSACAPAMPSPVGLSAQATHPLAPAGAATNASER 293
           P P + +S+ APA  S VG SA+     +PA A+T+A+ +
Sbjct: 141 PLPSATSSSHAPASSSSVGASARVGAGASPAPASTSAAPK 180

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>MK07_MOUSE (Q9WVS8) Mitogen-activated protein kinase 7 (EC 2.7.11.24)|
           (Extracellular signal-regulated kinase 5) (ERK-5) (BMK1
           kinase)
          Length = 806

 Score = 30.0 bits (66), Expect = 4.0
 Identities = 16/36 (44%), Positives = 21/36 (58%)
 Frame = -3

Query: 421 AAAPEPLSATSACAPAMPSPVGLSAQATHPLAPAGA 314
           A AP P  A S+  P   +P G  +Q+T PL PAG+
Sbjct: 584 APAPAPAPAPSSAQPTS-TPTGPVSQSTGPLQPAGS 618

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>ACON_CORJK (Q4JVM4) Aconitate hydratase (EC 4.2.1.3)|
          Length = 936

 Score = 30.0 bits (66), Expect = 4.0
 Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
 Frame = +3

Query: 363 GEGMAGAQALVALKGSGAAA--PTVRTYNITGYVPLGKASTPIAFPATDLAADSG 521
           G G+ G +A  A+ G   +   P V  + +TG +P G  +T +    TD+    G
Sbjct: 218 GWGVGGIEAEAAMLGQPISMLIPRVVGFKLTGEIPTGVTATDVVLTITDMLRQHG 272

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>CPO_DROME (Q01617) Protein couch potato|
          Length = 738

 Score = 30.0 bits (66), Expect = 4.0
 Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 11/48 (22%)
 Frame = -3

Query: 421 AAAPEPLSATSACA-----------PAMPSPVGLSAQATHPLAPAGAA 311
           AAAP+  +AT+A A           PA+ SP G +  A+HP  P  AA
Sbjct: 652 AAAPQSAAATAAAAAAASHHHYLSSPALASPAGSTNNASHPGNPQIAA 699

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>CDSN_PIG (O19084) Corneodesmosin (S protein) (Fragment)|
          Length = 225

 Score = 30.0 bits (66), Expect = 4.0
 Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
 Frame = +3

Query: 285 KSSLSLAFVAAPAGANGWVAWALNPTGEGMAGAQALVALKGSGA-AAPTVRTYNITGYVP 461
           +S  S A V  P G+ G     + P G G +G++   +L GSG  ++ ++ + + + + P
Sbjct: 89  QSGASSAIVFQPVGSGG-----VQPCGVGSSGSKGPCSLSGSGVHSSSSISSSSGSSFHP 143

Query: 462 LGKAST-PIAFPATDLAADSGS 524
            G  S  P + P T   + S S
Sbjct: 144 CGTVSQGPCSPPGTGSFSGSSS 165

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>GP149_CHICK (Q9DDD1) Probable G-protein coupled receptor 149 (G-protein coupled|
           receptor R35)
          Length = 723

 Score = 30.0 bits (66), Expect = 4.0
 Identities = 24/63 (38%), Positives = 31/63 (49%)
 Frame = -3

Query: 424 GAAAPEPLSATSACAPAMPSPVGLSAQATHPLAPAGAATNASERDDLDSS*VQCSAAPSC 245
           G AA   LS T +   A P P GLSA  +    PAG +T  S R    ++ V+  AA   
Sbjct: 442 GGAALAELSTTDS---ARPGPAGLSATDSARPGPAGFSTTDSARP--SAAGVRGEAASGL 496

Query: 244 GRS 236
           GR+
Sbjct: 497 GRT 499

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>MYC2_MARMO (P20389) N-myc 2 proto-oncogene protein|
          Length = 454

 Score = 29.6 bits (65), Expect = 5.3
 Identities = 19/50 (38%), Positives = 24/50 (48%)
 Frame = -3

Query: 451 PVMLYVLTVGAAAPEPLSATSACAPAMPSPVGLSAQATHPLAPAGAATNA 302
           P ++++L V    P P+    A APA  S VG  A      APA AA  A
Sbjct: 185 PAVVFLLPVSKRNPVPVRVAPARAPARASAVG--AAVARAAAPATAAVAA 232

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>VP40_HHV11 (P10210) Capsid protein P40 (Virion structural protein UL26)|
           [Contains: Capsid protein VP24 (EC 3.4.21.97)
           (Assemblin) (Protease); Capsid protein VP22A; UL26.5
           protein; C-terminal peptide]
          Length = 635

 Score = 29.6 bits (65), Expect = 5.3
 Identities = 18/63 (28%), Positives = 27/63 (42%)
 Frame = -3

Query: 415 APEPLSATSACAPAMPSPVGLSAQATHPLAPAGAATNASERDDLDSS*VQCSAAPSCGRS 236
           AP P  A +AC P  P P   S Q   PL    A   A+     ++S  +  A  +   +
Sbjct: 554 APTPPYAPAACPPGPPPPPCPSTQTRAPLPTEPAFPPAATGSQPEASNAEAGALVNASSA 613

Query: 235 SHL 227
           +H+
Sbjct: 614 AHV 616

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>AP180_MOUSE (Q61548) Clathrin coat assembly protein AP180 (Clathrin|
           coat-associated protein AP180) (91 kDa
           synaptosomal-associated protein) (Phosphoprotein F1-20)
          Length = 901

 Score = 29.6 bits (65), Expect = 5.3
 Identities = 28/108 (25%), Positives = 47/108 (43%), Gaps = 4/108 (3%)
 Frame = -3

Query: 520 PESAARSVAGNAMGVEALPSGT*PVMLYVLTVGAAAPE-PLSATSACAPAMPSPVGLSAQ 344
           P +     + +A    A+ + T  V L+     A+  E P ++  A APA P+PV  +  
Sbjct: 409 PTTTTEPASASASTTTAVTAVTTEVDLFGDAFAASPGEAPAASEGATAPATPAPVAAALD 468

Query: 343 A---THPLAPAGAATNASERDDLDSS*VQCSAAPSCGRSSHLAYVFPA 209
           A     P AP+  +  A+   DL +     ++AP    ++  A   PA
Sbjct: 469 ACSGNDPFAPSEGSAEAAPELDLFAMKPPETSAPVVTPTASTAPPVPA 516

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>SAX1_CHICK (P19601) Homeobox protein SAX-1 (CHOX-3) (Fragment)|
          Length = 232

 Score = 29.6 bits (65), Expect = 5.3
 Identities = 18/41 (43%), Positives = 23/41 (56%)
 Frame = -3

Query: 424 GAAAPEPLSATSACAPAMPSPVGLSAQATHPLAPAGAATNA 302
           GAAAP P  A + C+P+ P P  L  Q      P+ AAT+A
Sbjct: 129 GAAAPAP-PAAARCSPSPPRPAALPGQT----FPSYAATSA 164

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>NCOA6_MOUSE (Q9JL19) Nuclear receptor coactivator 6 (Amplified in breast cancer|
            protein 3) (Cancer-amplified transcriptional coactivator
            ASC-2) (Activating signal cointegrator 2) (ASC-2)
            (Peroxisome proliferator-activated receptor-interacting
            protein) (P
          Length = 2067

 Score = 29.6 bits (65), Expect = 5.3
 Identities = 22/76 (28%), Positives = 28/76 (36%), Gaps = 1/76 (1%)
 Frame = -3

Query: 523  LPESAARSVAGNAMGVEALPSGT*PVMLYVLTVGAA-APEPLSATSACAPAMPSPVGLSA 347
            LPE++   V   A G   +PS        ++  G    P PLSAT    P  P    L +
Sbjct: 1135 LPEASGSEVPSVAGGPNNMPSHLVVSQNQLMMTGPKPGPSPLSATQGATPQQPPVNSLPS 1194

Query: 346  QATHPLAPAGAATNAS 299
               H      A T  S
Sbjct: 1195 SHGHHFPNVAAPTQTS 1210

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>DNAA_BURPS (Q63YW5) Chromosomal replication initiator protein dnaA|
          Length = 533

 Score = 29.6 bits (65), Expect = 5.3
 Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 13/60 (21%)
 Frame = -3

Query: 421 AAAPEPLSATSACAPAM----PSPVGLSAQATHPLAPA---------GAATNASERDDLD 281
           +A P P++   A APA+    P+P G++A     +A A          AA NA E  DLD
Sbjct: 102 SANPAPVAPGPASAPAVDAHAPAPAGMNAATAAAVAAAQAAQAAQANAAALNADEAADLD 161

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>VGP3_EBVP3 (P68344) Envelope glycoprotein GP340 (Membrane antigen) (MA)|
          Length = 886

 Score = 29.6 bits (65), Expect = 5.3
 Identities = 23/86 (26%), Positives = 37/86 (43%), Gaps = 8/86 (9%)
 Frame = -3

Query: 466 PSGT*PVMLYVLTVGAAAPEPLSATSACAPAMPSPV----GLSAQATHPLAPAGAAT--- 308
           P+ T P    V T    +P P   TS  +P  PSP     G  ++A    +P  A T   
Sbjct: 461 PASTGPT---VSTADVTSPTPAGTTSGASPVTPSPSPRDNGTESKAPDMTSPTSAVTTPT 517

Query: 307 -NASERDDLDSS*VQCSAAPSCGRSS 233
            NA+      ++    + +P+ G++S
Sbjct: 518 PNATSPTPAVTTPTPNATSPTLGKTS 543

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>VGP3_EBVA8 (P68343) Envelope glycoprotein GP340 (Membrane antigen) (MA)|
          Length = 886

 Score = 29.6 bits (65), Expect = 5.3
 Identities = 23/86 (26%), Positives = 37/86 (43%), Gaps = 8/86 (9%)
 Frame = -3

Query: 466 PSGT*PVMLYVLTVGAAAPEPLSATSACAPAMPSPV----GLSAQATHPLAPAGAAT--- 308
           P+ T P    V T    +P P   TS  +P  PSP     G  ++A    +P  A T   
Sbjct: 461 PASTGPT---VSTADVTSPTPAGTTSGASPVTPSPSPRDNGTESKAPDMTSPTSAVTTPT 517

Query: 307 -NASERDDLDSS*VQCSAAPSCGRSS 233
            NA+      ++    + +P+ G++S
Sbjct: 518 PNATSPTPAVTTPTPNATSPTLGKTS 543

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>IF2_BRUSU (Q8FXT2) Translation initiation factor IF-2|
          Length = 959

 Score = 29.6 bits (65), Expect = 5.3
 Identities = 25/96 (26%), Positives = 34/96 (35%), Gaps = 17/96 (17%)
 Frame = -3

Query: 514 SAARSVAGNAMGVEALPSGT*PVMLYVLTVGAAAPEPLSATSACAPAMPS---------- 365
           +AA   A  A   +  P+   PV        A  P P+ A +  APA PS          
Sbjct: 64  AAAPKPAAPAAAPQQAPASA-PVSASAAQASAPQPAPVKAPATKAPAAPSAPVTKPHVAQ 122

Query: 364 -------PVGLSAQATHPLAPAGAATNASERDDLDS 278
                  P G  AQ   P   +G   N   R ++D+
Sbjct: 123 QRPVHQRPGGQQAQRPRPADRSGMVLNTLSRSEMDA 158

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>IF2_BRUME (Q8YEB3) Translation initiation factor IF-2|
          Length = 959

 Score = 29.6 bits (65), Expect = 5.3
 Identities = 25/96 (26%), Positives = 34/96 (35%), Gaps = 17/96 (17%)
 Frame = -3

Query: 514 SAARSVAGNAMGVEALPSGT*PVMLYVLTVGAAAPEPLSATSACAPAMPS---------- 365
           +AA   A  A   +  P+   PV        A  P P+ A +  APA PS          
Sbjct: 64  AAAPKPAAPAAAPQQAPASA-PVSASAAQASAPQPAPVKAPATKAPAAPSAPVTKPHVAQ 122

Query: 364 -------PVGLSAQATHPLAPAGAATNASERDDLDS 278
                  P G  AQ   P   +G   N   R ++D+
Sbjct: 123 QRPVHQRPGGQQAQRPRPADRSGMVLNTLSRSEMDA 158

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>IF2_BRUAB (Q57AA0) Translation initiation factor IF-2|
          Length = 959

 Score = 29.6 bits (65), Expect = 5.3
 Identities = 25/96 (26%), Positives = 34/96 (35%), Gaps = 17/96 (17%)
 Frame = -3

Query: 514 SAARSVAGNAMGVEALPSGT*PVMLYVLTVGAAAPEPLSATSACAPAMPS---------- 365
           +AA   A  A   +  P+   PV        A  P P+ A +  APA PS          
Sbjct: 64  AAAPKPAAPAAAPQQAPASA-PVSASAAQASAPQPAPVKAPATKAPAAPSAPVTKPHVAQ 122

Query: 364 -------PVGLSAQATHPLAPAGAATNASERDDLDS 278
                  P G  AQ   P   +G   N   R ++D+
Sbjct: 123 QRPVHQRPGGQQAQRPRPADRSGMVLNTLSRSEMDA 158

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>IF2_BRUA2 (Q2YQR7) Translation initiation factor IF-2|
          Length = 959

 Score = 29.6 bits (65), Expect = 5.3
 Identities = 25/96 (26%), Positives = 34/96 (35%), Gaps = 17/96 (17%)
 Frame = -3

Query: 514 SAARSVAGNAMGVEALPSGT*PVMLYVLTVGAAAPEPLSATSACAPAMPS---------- 365
           +AA   A  A   +  P+   PV        A  P P+ A +  APA PS          
Sbjct: 64  AAAPKPAAPAAAPQQAPASA-PVSASAAQASAPQPAPVKAPATKAPAAPSAPVTKPHVAQ 122

Query: 364 -------PVGLSAQATHPLAPAGAATNASERDDLDS 278
                  P G  AQ   P   +G   N   R ++D+
Sbjct: 123 QRPVHQRPGGQQAQRPRPADRSGMVLNTLSRSEMDA 158

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>ACON_CORDI (Q6NH63) Aconitate hydratase (EC 4.2.1.3)|
          Length = 934

 Score = 29.6 bits (65), Expect = 5.3
 Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
 Frame = +3

Query: 363 GEGMAGAQALVALKGSGAAA--PTVRTYNITGYVPLGKASTPIAFPATDLAADSG 521
           G G+ G +A  A+ G   +   P V  + +TG +P G  +T +    T++  + G
Sbjct: 218 GWGVGGIEAEAAMLGQPVSMLIPRVVGFKLTGEIPAGVTATDVVLTITEMLREHG 272

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>PROB_SYNY3 (P73071) Glutamate 5-kinase (EC 2.7.2.11) (Gamma-glutamyl kinase)|
           (GK)
          Length = 375

 Score = 29.6 bits (65), Expect = 5.3
 Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
 Frame = +3

Query: 288 SSLSLAFVAAPAGANG---WVAWALNPTGEGMAGAQALVALKGSGAAAPTVRTYNITG 452
           ++L   F A P   N    W+A+ L PTG+    A A+ ALK  G +   +    + G
Sbjct: 254 ANLGTQFEAQPRSDNARKRWIAYGLVPTGKIFIDAGAVQALKARGKSLLAIGVVALEG 311

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>EF1A_RHYAM (P27634) Elongation factor 1-alpha (EF-1-alpha) (Fragment)|
          Length = 412

 Score = 29.6 bits (65), Expect = 5.3
 Identities = 21/64 (32%), Positives = 26/64 (40%), Gaps = 8/64 (12%)
 Frame = +3

Query: 333 GWVAWALNPTGEGMAGAQALVAL------KGSGAAAPTVRTYNI--TGYVPLGKASTPIA 488
           GW    +N  GEG  G+ AL A+             P    Y I   G VP+G+  T I 
Sbjct: 162 GWKVERINGNGEGKCGSXALDAILPPPRPTDQALRLPLPDVYKIGGIGTVPVGRLETGIL 221

Query: 489 FPAT 500
            P T
Sbjct: 222 KPGT 225

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>TAF4_HUMAN (O00268) Transcription initiation factor TFIID subunit 4|
           (Transcription initiation factor TFIID 135 kDa subunit)
           (TAF(II)135) (TAFII-135) (TAFII135) (TAFII-130)
           (TAFII130)
          Length = 1085

 Score = 29.3 bits (64), Expect = 6.9
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -3

Query: 418 AAPEPLSATSACAPAMPSPVGLSAQATHPLAPAGAA 311
           AAP P +  +A  P  P+P  L+    HP  P  AA
Sbjct: 259 AAPAPAAPAAAPPPPPPAPATLARPPGHPAGPPTAA 294

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>ICP0_HHV2H (P28284) Trans-acting transcriptional protein ICP0 (VMW118 protein)|
          Length = 825

 Score = 29.3 bits (64), Expect = 6.9
 Identities = 32/112 (28%), Positives = 39/112 (34%), Gaps = 11/112 (9%)
 Frame = -3

Query: 424 GAAAPEPLSATSACAPAMPSPVGLSAQATHPLAPAG-AATNASERDDLDS---------- 278
           GAAA       S   PA  S    SA    PLAP G  A  A+ R   DS          
Sbjct: 507 GAAARPRKRRGSDSGPAASSSASSSAAPRSPLAPQGVGAKRAAPRRAPDSDSGDRGHGPL 566

Query: 277 S*VQCSAAPSCGRSSHLAYVFPAGNFSXXXXXXXXXXXXXXXATRSRSNSSA 122
           +     AAP     S  A V  A + S               A+ S ++SS+
Sbjct: 567 APASAGAAPPSASPSSQAAVAAASSSSASSSSASSSSASSSSASSSSASSSS 618

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>PICA_CAEEL (Q9XZI6) Phosphatidylinositol-binding clathrin assembly protein|
           unc-11 (AP180-like adaptor protein) (Uncoordinated
           protein 11)
          Length = 586

 Score = 29.3 bits (64), Expect = 6.9
 Identities = 17/59 (28%), Positives = 27/59 (45%)
 Frame = -3

Query: 520 PESAARSVAGNAMGVEALPSGT*PVMLYVLTVGAAAPEPLSATSACAPAMPSPVGLSAQ 344
           P+  AR  A  ++  +  P+G      +  T  A +  P  ATSA  P   +P+G+  Q
Sbjct: 473 PDDLARMTAQMSLNQQGAPAG------WNTTTSAVSNNPFGATSAPQPMYTAPMGMYQQ 525

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>STK39_MOUSE (Q9Z1W9) STE20/SPS1-related proline-alanine-rich protein kinase (EC|
           2.7.11.1) (Ste-20-related kinase)
           (Serine/threonine-protein kinase 39)
          Length = 556

 Score = 29.3 bits (64), Expect = 6.9
 Identities = 21/41 (51%), Positives = 24/41 (58%), Gaps = 4/41 (9%)
 Frame = -3

Query: 421 AAAPEPLSATSACAPA-MPSPVGLSAQATHPL---APAGAA 311
           AAA  P +ATSA APA  P+P   +A A  P    APA AA
Sbjct: 23  AAATAPAAATSAPAPAPAPAPAASAAPAPAPAAAPAPAPAA 63

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>SPEG_BRARE (Q696W0) Striated muscle preferentially expressed protein kinase (EC|
            2.7.11.1)
          Length = 2995

 Score = 29.3 bits (64), Expect = 6.9
 Identities = 16/54 (29%), Positives = 28/54 (51%)
 Frame = -3

Query: 451  PVMLYVLTVGAAAPEPLSATSACAPAMPSPVGLSAQATHPLAPAGAATNASERD 290
            PV  YV    + AP P+S +     ++ SP+G  A +  P  P G A ++++ +
Sbjct: 2618 PVPTYVPATCSLAPTPVSPSVIVVSSI-SPIGEGASSPTPETPTGQAVSSTKSE 2670

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>CPN_DROME (Q02910) Calphotin|
          Length = 864

 Score = 29.3 bits (64), Expect = 6.9
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = -3

Query: 427 VGAAAPEPLSATSACAPAMPSPVGLSAQATHPLAPAGAATNAS 299
           V A+AP P + T   +P + +P  + A  T P+A   AA  A+
Sbjct: 141 VAASAPTPAAVTPVVSPVIATPPVVPANTTVPVAAPVAAVPAA 183

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>COG5_HUMAN (Q9UP83) Conserved oligomeric Golgi complex component 5 (13S Golgi|
           transport complex 90 kDa subunit) (GTC-90) (Golgi
           transport complex 1)
          Length = 839

 Score = 29.3 bits (64), Expect = 6.9
 Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 5/46 (10%)
 Frame = +3

Query: 312 AAPAGANGWVAWALNPTGEGMAGAQALVAL-----KGSGAAAPTVR 434
           A+P G +   A  +NP    M G    VA+     +GSGAAA TVR
Sbjct: 12  ASPPGRSRSAADDINPAPANMEGGGGSVAVAGLGARGSGAAAATVR 57

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>VP40_EBV (P03234) Capsid protein P40 (Virion structural protein BVRF2)|
           (EC-RF3 and EC-RF3A) [Contains: Capsid protein VP24
           (Assemblin) (Protease) (EC 3.4.21.97); Capsid protein
           VP22A; C-terminal peptide]
          Length = 605

 Score = 29.3 bits (64), Expect = 6.9
 Identities = 21/65 (32%), Positives = 26/65 (40%), Gaps = 5/65 (7%)
 Frame = -3

Query: 466 PSGT*PVMLYVLTVGAAAPEPLSATSACAPAMPSPVGLSAQATHPLA-----PAGAATNA 302
           P G  P   Y +      P P   +   A A P P G  A   H +A      AGAA N+
Sbjct: 484 PYGFQPHQSYEVPRYVPHPPPPPTSHQAAQAQPPPPGTQAPEAHCVAESTIPEAGAAGNS 543

Query: 301 SERDD 287
             R+D
Sbjct: 544 GPRED 548

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>RCOR1_HUMAN (Q9UKL0) REST corepressor 1 (Protein CoREST)|
          Length = 482

 Score = 28.9 bits (63), Expect = 9.0
 Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
 Frame = -3

Query: 382 APAMPSPVGLSAQATHPLA-PAGAATNASERDDLDSS*VQCSAAPSCGRSSHLAYVFPAG 206
           A A  S    SA A+   A PA  A + +      ++    +AAP+ G++  LA   P G
Sbjct: 18  AAASASAAAASAAASAACASPAATAASGAAASSASAAAASAAAAPNNGQNKSLAAAAPNG 77

Query: 205 NFS 197
           N S
Sbjct: 78  NSS 80

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>CUTL1_HUMAN (P39880) Homeobox protein cut-like 1 (CCAAT displacement protein)|
            (CDP)
          Length = 1505

 Score = 28.9 bits (63), Expect = 9.0
 Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
 Frame = -3

Query: 412  PEPLSATSACAPAMPSPVGLSAQAT---HPLAPAGA 314
            P P SAT+  APA P     SA A     P AP+ A
Sbjct: 1403 PSPASATATAAPAAPEDAATSAAAAPGEGPAAPSSA 1438

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>PRGR_CANFA (Q9GLW0) Progesterone receptor (PR)|
          Length = 939

 Score = 28.9 bits (63), Expect = 9.0
 Identities = 19/63 (30%), Positives = 29/63 (46%)
 Frame = -3

Query: 421 AAAPEPLSATSACAPAMPSPVGLSAQATHPLAPAGAATNASERDDLDSS*VQCSAAPSCG 242
           AAA    +A ++ AP+ PS   L ++      P G A +A  R D+  +  +  AA   G
Sbjct: 49  AAAAAAAAAAASAAPSAPSDRLLFSRRGQGADPGGKAQDAQPRPDVARADPRLEAASGAG 108

Query: 241 RSS 233
             S
Sbjct: 109 ADS 111

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>TRAC_RHISN (P55419) Probable conjugal transfer protein traC|
          Length = 102

 Score = 28.9 bits (63), Expect = 9.0
 Identities = 19/43 (44%), Positives = 21/43 (48%)
 Frame = +3

Query: 291 SLSLAFVAAPAGANGWVAWALNPTGEGMAGAQALVALKGSGAA 419
           SL+  F     GANG  +    P G   AGA A  A  GSGAA
Sbjct: 55  SLAKRFRGGQGGANGASSGGKKPDGNATAGASA--AAVGSGAA 95


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,578,174
Number of Sequences: 219361
Number of extensions: 607077
Number of successful extensions: 3604
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 3282
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3561
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 3970331829
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result