ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart54e02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PRPH_MESAU (P06680) Acidic proline-rich protein HP43A precursor 32 1.3
2VID21_ASPFU (Q4WP03) Chromatin modification-related protein vid21 30 3.6
3KCNK4_HUMAN (Q9NYG8) Potassium channel subfamily K member 4 (TWI... 30 3.6
4RS10B_ARATH (Q9FFS8) 40S ribosomal protein S10-2 30 4.8
5VID21_EMENI (Q5B4Q8) Chromatin modification-related protein vid21 29 8.1

>PRPH_MESAU (P06680) Acidic proline-rich protein HP43A precursor|
          Length = 183

 Score = 32.0 bits (71), Expect = 1.3
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 5/49 (10%)
 Frame = -3

Query: 374 EPDGERRGGQRDGVEQQHGEHGAL-----AQEQHLPQRQGEGKARPPFP 243
           + DGE  G   +G  QQ G+H          +Q  PQ++G+ + RPP P
Sbjct: 57  DDDGEEDGNAPEGPPQQGGDHQKPRPPKPGNQQGPPQQEGQQQNRPPKP 105



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>VID21_ASPFU (Q4WP03) Chromatin modification-related protein vid21|
          Length = 1467

 Score = 30.4 bits (67), Expect = 3.6
 Identities = 26/79 (32%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
 Frame = -3

Query: 347  QRDGVEQQHGEHGALAQEQHLPQRQGE--GKARPPFPRRFCTTGRRIDHEAS*QRLTLLL 174
            QR  + QQ        Q+Q   Q+ G   G+A+PP  RR  T   R+D   S + L LL 
Sbjct: 956  QRTVLAQQQAAQQQQQQQQQQQQQGGNNSGQAQPPIRRR-TTQPVRVDRRRSSKHLALL- 1013

Query: 173  RWVSDGRSARRLVTKRELL 117
                   + R+L  KRE +
Sbjct: 1014 ------DAMRKLAKKRETM 1026



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>KCNK4_HUMAN (Q9NYG8) Potassium channel subfamily K member 4 (TWIK-related|
           arachidonic acid-stimulated potassium channel protein)
           (TRAAK) (Two pore K(+) channel KT4.1)
          Length = 393

 Score = 30.4 bits (67), Expect = 3.6
 Identities = 17/41 (41%), Positives = 19/41 (46%)
 Frame = +3

Query: 75  PHIPPLPCPAQSLS**FSLRHEPPRAPTVANPPQQES*SLL 197
           P +PP PCPAQ L      R   P  P  A PP   + S L
Sbjct: 302 PLLPPPPCPAQPLG-----RPRSPSPPEKAQPPSPPTASAL 337



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>RS10B_ARATH (Q9FFS8) 40S ribosomal protein S10-2|
          Length = 180

 Score = 30.0 bits (66), Expect = 4.8
 Identities = 24/56 (42%), Positives = 27/56 (48%), Gaps = 6/56 (10%)
 Frame = -3

Query: 389 PVAPREPDGERRGGQRDGVE---QQHGEHG--ALAQEQHLPQ-RQGEGKARPPFPR 240
           P  P   DGERR G RDG     +  GE+G  A A   + P  R G G AR  F R
Sbjct: 110 PRGPPRGDGERRFGDRDGYRGGPKSGGEYGDKAGAPADYQPGFRGGAGGARQGFGR 165



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>VID21_EMENI (Q5B4Q8) Chromatin modification-related protein vid21|
          Length = 1447

 Score = 29.3 bits (64), Expect = 8.1
 Identities = 29/89 (32%), Positives = 41/89 (46%), Gaps = 3/89 (3%)
 Frame = -3

Query: 347  QRDGVEQQHGEHGALAQEQHLPQRQGE-GKARPPFP--RRFCTTGRRIDHEAS*QRLTLL 177
            QR+ + QQ     A  Q+Q   Q+QG  G  + P P  RR  T   R+D   S + L LL
Sbjct: 920  QRNVMAQQ----AAAQQQQQQQQQQGSNGNNQQPMPLIRRRGTQPIRVDRRRSSKHLALL 975

Query: 176  LRWVSDGRSARRLVTKRELLGERLGRAGQ 90
                    + R+L  KRE + ++   A Q
Sbjct: 976  -------DAMRKLAKKRETILQKQQHASQ 997


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,368,500
Number of Sequences: 219361
Number of extensions: 1244065
Number of successful extensions: 4424
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4411
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4700377760
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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