ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart54e01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ATG11_ASPFU (Q4WY31) Autophagy-related protein 11 31 2.3
2INADL_MOUSE (Q63ZW7) InaD-like protein (Inadl protein) (Pals1-as... 30 5.1

>ATG11_ASPFU (Q4WY31) Autophagy-related protein 11|
          Length = 1264

 Score = 31.2 bits (69), Expect = 2.3
 Identities = 17/31 (54%), Positives = 20/31 (64%)
 Frame = +2

Query: 203 GRARRRSDLESLPAPPMFTFPFL*RPSPPDE 295
           G  R  + LES+PAP +  FPFL RPS P E
Sbjct: 139 GWQRALTTLESIPAPKV--FPFLGRPSTPKE 167



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>INADL_MOUSE (Q63ZW7) InaD-like protein (Inadl protein) (Pals1-associated tight|
            junction protein) (Protein associated to tight junctions)
            (Channel-interacting PDZ domain-containing protein)
          Length = 1834

 Score = 30.0 bits (66), Expect = 5.1
 Identities = 15/29 (51%), Positives = 18/29 (62%)
 Frame = -3

Query: 277  PSEEGEGKHGRCGEAL*IGSATSSSQDQG 191
            PS EG G+HGR  +   + S TSSS D G
Sbjct: 964  PSSEGNGQHGRFDDMGHLHSLTSSSLDLG 992


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,910,214
Number of Sequences: 219361
Number of extensions: 826399
Number of successful extensions: 2422
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2328
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2420
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 5044307840
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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