ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart54d01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT017252.1| Zea mays clone EL01N0307G08.c mRNA sequence 331 2e-87
2gb|AC104271.2| Oryza sativa (japonica cultivar-group) chromosome... 206 6e-50
3gb|AC136225.2| Oryza sativa (japonica cultivar-group) chromosome... 206 6e-50
4dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 206 6e-50
5dbj|AB034704.1| Rubrivivax gelatinosus photosynthetic gene clust... 78 4e-11
6emb|AL939125.1|SCO939125 Streptomyces coelicolor A3(2) complete ... 46 0.13
7gb|AY644464.1| Saccharum officinarum mitochondrial uncoupling pr... 44 0.51
8gb|AY644463.1| Saccharum officinarum mitochondrial uncoupling pr... 44 0.51
9gb|CP000135.1| Rhizobium etli CFN 42 plasmid p42b, complete sequ... 44 0.51
10gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete ge... 44 0.51
11gb|AC074225.4| Mus musculus strain C57BL6/J chromosome 6 clone R... 42 2.0
12gb|AC073890.9| Homo sapiens BAC clone RP11-601D18 from 7, comple... 42 2.0
13ref|XM_964159.1| PREDICTED: Tribolium castaneum similar to Alpha... 42 2.0
14gb|AC164289.3| Mus musculus BAC clone RP23-380L19 from chromosom... 42 2.0
15emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,comp... 42 2.0
16gb|AE001825.1| Deinococcus radiodurans R1 chromosome 2, complete... 42 2.0
17gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome 42 2.0
18emb|AL669901.26| Mouse DNA sequence from clone RP23-35N5 on chro... 42 2.0
19gb|AY642232.1| Plasmodium knowlesi Pk1(B+)1+ clone 4 SICAvar mRN... 40 7.9
20ref|NM_197856.1| Oryza sativa (japonica cultivar-group) putative... 40 7.9
21ref|NM_197599.1| Oryza sativa (japonica cultivar-group) mucin-li... 40 7.9
22ref|NM_196979.1| Oryza sativa (japonica cultivar-group) putative... 40 7.9
23gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence 40 7.9
24gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome 40 7.9
25gb|DQ377804.1|DQ377804S1 Squirrelpox virus 1296/99, partial genome 40 7.9
26gb|AC166261.6| Mus musculus BAC RP23-343K20 (Roswell Park Cance... 40 7.9
27emb|BX640433.1| Bordetella parapertussis strain 12822, complete ... 40 7.9
28gb|AC163342.2| Mus musculus BAC clone RP24-115M13 from chromosom... 40 7.9
29emb|AJ630120.2| Hordeum vulgare subsp. vulgare mRNA for C2 domai... 40 7.9
30gb|AC090041.13| Homo sapiens 12 BAC RP11-239F20 (Roswell Park Ca... 40 7.9
31gb|DQ397840.1| Cenarchaeum symbiosum clone C05D01, complete sequ... 40 7.9
32gb|DQ397593.2| Cenarchaeum symbiosum clone C03B12, complete sequ... 40 7.9
33gb|DQ397567.1| Cenarchaeum symbiosum clone C07B06, complete sequ... 40 7.9
34gb|AE012140.1| Xanthomonas campestris pv. campestris str. ATCC 3... 40 7.9
35gb|AC078948.11| Oryza sativa chromosome 10 BAC OSJNBa0001K12 gen... 40 7.9
36gb|AC051633.7| Oryza sativa chromosome 10 BAC OSJNBb0015I11 geno... 40 7.9
37gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, ... 40 7.9
38dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.9
39dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.9
40gb|AC060755.9|AC060755 Oryza sativa chromosome 10 BAC OSJNBa0003... 40 7.9
41dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 40 7.9
42dbj|AP003629.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.9
43gb|AC153903.5| Mus musculus 6 BAC RP23-20C5 (Roswell Park Cancer... 40 7.9
44gb|AE005133.1| Halobacterium sp. NRC-1 section 164 of 170 of the... 40 7.9
45gb|AE005054.1| Halobacterium sp. NRC-1 section 85 of 170 of the ... 40 7.9
46dbj|AK106264.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 7.9
47gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, c... 40 7.9
48gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 7.9 
>gb|BT017252.1| Zea mays clone EL01N0307G08.c mRNA sequence
          Length = 1296

 Score =  331 bits (167), Expect = 2e-87
 Identities = 455/551 (82%)
 Strand = Plus / Plus

                                                                       
Query: 26  atggaggcgctcgtggtgcggaagctcggcgatccaacgctgccgcccggcggcgaggaa 85
           ||||||||||||||||||||| |||| |||||||| || ||||| || ||||| || |  
Sbjct: 49  atggaggcgctcgtggtgcggcagctgggcgatcccaccctgccccctggcggtgaagcc 108

                                                                       
Query: 86  tctccgtttgcggcagtctccggtgaccgaccgattccagagctctcctcgccgacctca 145
           || ||||| || || ||||| || || |  ||  | || ||| |||| ||||||||  | 
Sbjct: 109 tccccgttcgccgcggtctctggggatcacccagtgccggagatctcatcgccgacggct 168

                                                                       
Query: 146 gtgcgggtgcgcgtggcggcgaccagcctcaatttcgcgacgttccttcaagtccagggc 205
           || || ||||| || ||||||||||||||||| ||||| |||||||| || || ||||||
Sbjct: 169 gtccgagtgcgagtcgcggcgaccagcctcaacttcgccacgttcctccaggtgcagggc 228

                                                                       
Query: 206 aagtaccaggagcgccccccgctgcccttcgtgccagggtccgactacgccggcgtcgtc 265
           |||||||||||||| |||||||| || |||||||| || ||||||||| | ||||| |||
Sbjct: 229 aagtaccaggagcggcccccgcttccgttcgtgcctggatccgactactctggcgtggtc 288

                                                                       
Query: 266 gacgccgtcggccccggcgtacgcagacttcgccccggcgaccgcgtctgctccctcgcc 325
           ||||| ||||| |||||||| ||  | || || ||||||||||||||||||||| |  ||
Sbjct: 289 gacgcagtcggtcccggcgtgcgtgggctccggcccggcgaccgcgtctgctcctttacc 348

                                                                       
Query: 326 agcgtcgggtccttcgccgagtttatcgtcgccgacgagaaggcactatacgtagtccct 385
            || |||| |||||||| || || ||||||||||| ||||||   ||||   | || |||
Sbjct: 349 ggcctcggttccttcgctgacttcatcgtcgccgaggagaagcagctatttttggtgcct 408

                                                                       
Query: 386 gatggatgtgacctggtcgctgctggagcattacctgtggcatttggtacatcgcatttg 445
           |||||||| ||||||||| | ||||| || ||||| || |||||||||||||| ||||||
Sbjct: 409 gatggatgcgacctggtcacagctggggctttaccagttgcatttggtacatcacatttg 468

                                                                       
Query: 446 gcccttgcccacagagctcaactaaaggctggtcaggtgctacttgtacttggtgctgcc 505
           |||||||  ||| |||| ||| | |||||||| |||||||||||||| ||||||||||| 
Sbjct: 469 gcccttgttcaccgagcccaattgaaggctggccaggtgctacttgttcttggtgctgct 528

                                                                       
Query: 506 ggcggtgttggggtatctgctgtacagataggaaaagtttgcggtgctattgttattgca 565
           || ||||| |||| ||||||||| || |||||||||||||| |||||| |||||||||||
Sbjct: 529 ggtggtgtcggggcatctgctgtgcaaataggaaaagtttgtggtgctgttgttattgca 588

                      
Query: 566 gttgccagggg 576
           ||||| |||||
Sbjct: 589 gttgctagggg 599
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>gb|AC104271.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1308_D01,
            complete sequence
          Length = 117724

 Score =  206 bits (104), Expect = 6e-50
 Identities = 284/344 (82%)
 Strand = Plus / Plus

                                                                        
Query: 24   aaatggaggcgctcgtggtgcggaagctcggcgatccaacgctgccgcccggcggcgagg 83
            ||||||| |||||||||||||||  |||||| || || |||||| | |||||||||||||
Sbjct: 3317 aaatggacgcgctcgtggtgcggcggctcggggaccccacgctggcccccggcggcgagg 3376

                                                                        
Query: 84   aatctccgtttgcggcagtctccggtgaccgaccgattccagagctctcctcgccgacct 143
              || ||||| ||| | ||| |||| ||||  |||   || | |||| | |||||||| |
Sbjct: 3377 cctccccgttcgcgccggtcaccggggaccacccggcgccggcgctcgcgtcgccgacgt 3436

                                                                        
Query: 144  cagtgcgggtgcgcgtggcggcgaccagcctcaatttcgcgacgttccttcaagtccagg 203
            | |||||||||||||||||||| ||||||||||| ||||| || | ||| || || ||||
Sbjct: 3437 ccgtgcgggtgcgcgtggcggccaccagcctcaacttcgccacctacctgcaggtacagg 3496

                                                                        
Query: 204  gcaagtaccaggagcgccccccgctgcccttcgtgccagggtccgactacgccggcgtcg 263
            |||||||||||||||||||| |||| || ||||| || || ||||||||||| ||  |||
Sbjct: 3497 gcaagtaccaggagcgccccgcgctaccgttcgtcccgggctccgactacgcggggttcg 3556

                                                                        
Query: 264  tcgacgccgtcggccccggcgtacgcagacttcgccccggcgaccgcgtctgctccctcg 323
            |||||||||||||||||| ||| || ||  | |||||||| ||||||||||||  |||||
Sbjct: 3557 tcgacgccgtcggccccgccgtgcggaggttccgccccggggaccgcgtctgcggcctcg 3616

                                                        
Query: 324  ccagcgtcgggtccttcgccgagtttatcgtcgccgacgagaag 367
            ||  |||||| |||||||| ||  | ||||||||||||||||||
Sbjct: 3617 ccgccgtcggctccttcgcggatctcatcgtcgccgacgagaag 3660



 Score =  141 bits (71), Expect = 3e-30
 Identities = 95/103 (92%)
 Strand = Plus / Plus

                                                                        
Query: 383  cctgatggatgtgacctggtcgctgctggagcattacctgtggcatttggtacatcgcat 442
            ||||||||||||||||| || |||||||||||||| ||||| ||||||||||||||||||
Sbjct: 4702 cctgatggatgtgaccttgttgctgctggagcattgcctgttgcatttggtacatcgcat 4761

                                                       
Query: 443  ttggcccttgcccacagagctcaactaaaggctggtcaggtgc 485
            ||||||||||  ||||||||| ||||||||||||| |||||||
Sbjct: 4762 ttggcccttgtacacagagctgaactaaaggctggccaggtgc 4804



 Score =  111 bits (56), Expect = 3e-21
 Identities = 83/92 (90%)
 Strand = Plus / Plus

                                                                        
Query: 479  caggtgctacttgtacttggtgctgccggcggtgttggggtatctgctgtacagatagga 538
            |||||||||||||| || |||||||| || ||||| |||| |||||||||||| ||||||
Sbjct: 6987 caggtgctacttgttctgggtgctgctggtggtgtcggggcatctgctgtacaaatagga 7046

                                            
Query: 539  aaagtttgcggtgctattgttattgcagttgc 570
            |||||||| |||||| ||||||||||||||||
Sbjct: 7047 aaagtttgtggtgctgttgttattgcagttgc 7078
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>gb|AC136225.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0022L07,
              complete sequence
          Length = 142134

 Score =  206 bits (104), Expect = 6e-50
 Identities = 284/344 (82%)
 Strand = Plus / Plus

                                                                          
Query: 24     aaatggaggcgctcgtggtgcggaagctcggcgatccaacgctgccgcccggcggcgagg 83
              ||||||| |||||||||||||||  |||||| || || |||||| | |||||||||||||
Sbjct: 133864 aaatggacgcgctcgtggtgcggcggctcggggaccccacgctggcccccggcggcgagg 133923

                                                                          
Query: 84     aatctccgtttgcggcagtctccggtgaccgaccgattccagagctctcctcgccgacct 143
                || ||||| ||| | ||| |||| ||||  |||   || | |||| | |||||||| |
Sbjct: 133924 cctccccgttcgcgccggtcaccggggaccacccggcgccggcgctcgcgtcgccgacgt 133983

                                                                          
Query: 144    cagtgcgggtgcgcgtggcggcgaccagcctcaatttcgcgacgttccttcaagtccagg 203
              | |||||||||||||||||||| ||||||||||| ||||| || | ||| || || ||||
Sbjct: 133984 ccgtgcgggtgcgcgtggcggccaccagcctcaacttcgccacctacctgcaggtacagg 134043

                                                                          
Query: 204    gcaagtaccaggagcgccccccgctgcccttcgtgccagggtccgactacgccggcgtcg 263
              |||||||||||||||||||| |||| || ||||| || || ||||||||||| ||  |||
Sbjct: 134044 gcaagtaccaggagcgccccgcgctaccgttcgtcccgggctccgactacgcggggttcg 134103

                                                                          
Query: 264    tcgacgccgtcggccccggcgtacgcagacttcgccccggcgaccgcgtctgctccctcg 323
              |||||||||||||||||| ||| || ||  | |||||||| ||||||||||||  |||||
Sbjct: 134104 tcgacgccgtcggccccgccgtgcggaggttccgccccggggaccgcgtctgcggcctcg 134163

                                                          
Query: 324    ccagcgtcgggtccttcgccgagtttatcgtcgccgacgagaag 367
              ||  |||||| |||||||| ||  | ||||||||||||||||||
Sbjct: 134164 ccgccgtcggctccttcgcggatctcatcgtcgccgacgagaag 134207



 Score =  141 bits (71), Expect = 3e-30
 Identities = 95/103 (92%)
 Strand = Plus / Plus

                                                                          
Query: 383    cctgatggatgtgacctggtcgctgctggagcattacctgtggcatttggtacatcgcat 442
              ||||||||||||||||| || |||||||||||||| ||||| ||||||||||||||||||
Sbjct: 135249 cctgatggatgtgaccttgttgctgctggagcattgcctgttgcatttggtacatcgcat 135308

                                                         
Query: 443    ttggcccttgcccacagagctcaactaaaggctggtcaggtgc 485
              ||||||||||  ||||||||| ||||||||||||| |||||||
Sbjct: 135309 ttggcccttgtacacagagctgaactaaaggctggccaggtgc 135351



 Score =  111 bits (56), Expect = 3e-21
 Identities = 83/92 (90%)
 Strand = Plus / Plus

                                                                          
Query: 479    caggtgctacttgtacttggtgctgccggcggtgttggggtatctgctgtacagatagga 538
              |||||||||||||| || |||||||| || ||||| |||| |||||||||||| ||||||
Sbjct: 137534 caggtgctacttgttctgggtgctgctggtggtgtcggggcatctgctgtacaaatagga 137593

                                              
Query: 539    aaagtttgcggtgctattgttattgcagttgc 570
              |||||||| |||||| ||||||||||||||||
Sbjct: 137594 aaagtttgtggtgctgttgttattgcagttgc 137625
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score =  206 bits (104), Expect = 6e-50
 Identities = 284/344 (82%)
 Strand = Plus / Plus

                                                                            
Query: 24       aaatggaggcgctcgtggtgcggaagctcggcgatccaacgctgccgcccggcggcgagg 83
                ||||||| |||||||||||||||  |||||| || || |||||| | |||||||||||||
Sbjct: 14274531 aaatggacgcgctcgtggtgcggcggctcggggaccccacgctggcccccggcggcgagg 14274590

                                                                            
Query: 84       aatctccgtttgcggcagtctccggtgaccgaccgattccagagctctcctcgccgacct 143
                  || ||||| ||| | ||| |||| ||||  |||   || | |||| | |||||||| |
Sbjct: 14274591 cctccccgttcgcgccggtcaccggggaccacccggcgccggcgctcgcgtcgccgacgt 14274650

                                                                            
Query: 144      cagtgcgggtgcgcgtggcggcgaccagcctcaatttcgcgacgttccttcaagtccagg 203
                | |||||||||||||||||||| ||||||||||| ||||| || | ||| || || ||||
Sbjct: 14274651 ccgtgcgggtgcgcgtggcggccaccagcctcaacttcgccacctacctgcaggtacagg 14274710

                                                                            
Query: 204      gcaagtaccaggagcgccccccgctgcccttcgtgccagggtccgactacgccggcgtcg 263
                |||||||||||||||||||| |||| || ||||| || || ||||||||||| ||  |||
Sbjct: 14274711 gcaagtaccaggagcgccccgcgctaccgttcgtcccgggctccgactacgcggggttcg 14274770

                                                                            
Query: 264      tcgacgccgtcggccccggcgtacgcagacttcgccccggcgaccgcgtctgctccctcg 323
                |||||||||||||||||| ||| || ||  | |||||||| ||||||||||||  |||||
Sbjct: 14274771 tcgacgccgtcggccccgccgtgcggaggttccgccccggggaccgcgtctgcggcctcg 14274830

                                                            
Query: 324      ccagcgtcgggtccttcgccgagtttatcgtcgccgacgagaag 367
                ||  |||||| |||||||| ||  | ||||||||||||||||||
Sbjct: 14274831 ccgccgtcggctccttcgcggatctcatcgtcgccgacgagaag 14274874



 Score =  141 bits (71), Expect = 3e-30
 Identities = 95/103 (92%)
 Strand = Plus / Plus

                                                                            
Query: 383      cctgatggatgtgacctggtcgctgctggagcattacctgtggcatttggtacatcgcat 442
                ||||||||||||||||| || |||||||||||||| ||||| ||||||||||||||||||
Sbjct: 14275916 cctgatggatgtgaccttgttgctgctggagcattgcctgttgcatttggtacatcgcat 14275975

                                                           
Query: 443      ttggcccttgcccacagagctcaactaaaggctggtcaggtgc 485
                ||||||||||  ||||||||| ||||||||||||| |||||||
Sbjct: 14275976 ttggcccttgtacacagagctgaactaaaggctggccaggtgc 14276018



 Score =  111 bits (56), Expect = 3e-21
 Identities = 83/92 (90%)
 Strand = Plus / Plus

                                                                            
Query: 479      caggtgctacttgtacttggtgctgccggcggtgttggggtatctgctgtacagatagga 538
                |||||||||||||| || |||||||| || ||||| |||| |||||||||||| ||||||
Sbjct: 14278201 caggtgctacttgttctgggtgctgctggtggtgtcggggcatctgctgtacaaatagga 14278260

                                                
Query: 539      aaagtttgcggtgctattgttattgcagttgc 570
                |||||||| |||||| ||||||||||||||||
Sbjct: 14278261 aaagtttgtggtgctgttgttattgcagttgc 14278292
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>dbj|AB034704.1| Rubrivivax gelatinosus photosynthetic gene cluster, complete cds,
             stain:IL144
          Length = 58996

 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 60/67 (89%)
 Strand = Plus / Minus

                                                                         
Query: 201   agggcaagtaccaggagcgccccccgctgcccttcgtgccagggtccgactacgccggcg 260
             ||||||||||||||| |||||| ||||||||||||||||| ||  |||| | ||||||||
Sbjct: 51546 agggcaagtaccaggcgcgcccgccgctgcccttcgtgcccggcgccgagttcgccggcg 51487

                    
Query: 261   tcgtcga 267
             |||||||
Sbjct: 51486 tcgtcga 51480
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>emb|AL939125.1|SCO939125 Streptomyces coelicolor A3(2) complete genome; segment 22/29
          Length = 295150

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 255    ccggcgtcgtcgacgccgtcggc 277
              |||||||||||||||||||||||
Sbjct: 224823 ccggcgtcgtcgacgccgtcggc 224845
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>gb|AY644464.1| Saccharum officinarum mitochondrial uncoupling protein 5 mRNA,
           complete cds; nuclear gene for mitochondrial product
          Length = 1532

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 249 actacgccggcgtcgtcgacgccgtcggcc 278
           ||||||||||||||| ||||||| ||||||
Sbjct: 829 actacgccggcgtcggcgacgccatcggcc 858
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>gb|AY644463.1| Saccharum officinarum mitochondrial uncoupling protein 4 mRNA,
           complete cds; nuclear gene for mitochondrial product
          Length = 1575

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 249 actacgccggcgtcgtcgacgccgtcggcc 278
           ||||||||||||||| ||||||| ||||||
Sbjct: 882 actacgccggcgtcggcgacgccatcggcc 911
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>gb|CP000135.1| Rhizobium etli CFN 42 plasmid p42b, complete sequence
          Length = 184338

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 256   cggcgtcgtcgacgccgtcggc 277
             ||||||||||||||||||||||
Sbjct: 57218 cggcgtcgtcgacgccgtcggc 57239
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>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome
          Length = 4751080

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                            
Query: 256    cggcgtcgtcgacgccgtcggccccggcgt 285
              ||||||||||||  ||||||||||||||||
Sbjct: 761732 cggcgtcgtcgaatccgtcggccccggcgt 761703
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>gb|AC074225.4| Mus musculus strain C57BL6/J chromosome 6 clone RP23-78M3, complete
             sequence
          Length = 197412

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 553   tattgttattgcagttgccag 573
             |||||||||||||||||||||
Sbjct: 78474 tattgttattgcagttgccag 78454
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>gb|AC073890.9| Homo sapiens BAC clone RP11-601D18 from 7, complete sequence
          Length = 65058

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 553   tattgttattgcagttgccag 573
             |||||||||||||||||||||
Sbjct: 11538 tattgttattgcagttgccag 11518
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>ref|XM_964159.1| PREDICTED: Tribolium castaneum similar to Alpha-fetoprotein
            enhancer-binding protein (AT motif-binding factor)
            (AT-binding transcription factor 1) (LOC657717), mRNA
          Length = 7833

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 253  cgccggcgtcgtcgacgccgtcggc 277
            ||||||||||||||||| |||||||
Sbjct: 4806 cgccggcgtcgtcgacgacgtcggc 4782
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>gb|AC164289.3| Mus musculus BAC clone RP23-380L19 from chromosome 6, complete sequence
          Length = 212908

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 553    tattgttattgcagttgccag 573
              |||||||||||||||||||||
Sbjct: 188377 tattgttattgcagttgccag 188397
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>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence
          Length = 5888780

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 247     cgactacgccggcgtcgtcga 267
               |||||||||||||||||||||
Sbjct: 5170274 cgactacgccggcgtcgtcga 5170294



 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 499     tgctgccggcggtgttgggg 518
               ||||||||||||||||||||
Sbjct: 3610207 tgctgccggcggtgttgggg 3610188
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>gb|AE001825.1| Deinococcus radiodurans R1 chromosome 2, complete sequence
          Length = 412348

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 33/37 (89%)
 Strand = Plus / Plus

                                                   
Query: 202    gggcaagtaccaggagcgccccccgctgcccttcgtg 238
              |||| |||||||||  ||||| |||||||||||||||
Sbjct: 264883 gggccagtaccaggttcgcccgccgctgcccttcgtg 264919
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>gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome
          Length = 7215267

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 344     gagtttatcgtcgccgacgag 364
               |||||||||||||||||||||
Sbjct: 1857843 gagtttatcgtcgccgacgag 1857823



 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 60     caacgctgccgcccggcggcg 80
              |||||||||||||||||||||
Sbjct: 317856 caacgctgccgcccggcggcg 317876
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>emb|AL669901.26| Mouse DNA sequence from clone RP23-35N5 on chromosome X, complete
             sequence
          Length = 226126

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 472   ggctggtcaggtgctacttgtactt 496
             |||||||||||||||| ||||||||
Sbjct: 21316 ggctggtcaggtgctaattgtactt 21292
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>gb|AY642232.1| Plasmodium knowlesi Pk1(B+)1+ clone 4 SICAvar mRNA, partial sequence
          Length = 3799

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 256  cggcgtcgtcgacgccgtcg 275
            ||||||||||||||||||||
Sbjct: 1072 cggcgtcgtcgacgccgtcg 1091
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>ref|NM_197856.1| Oryza sativa (japonica cultivar-group) putative
           carnitine/acylcarnitine translocase (OSJNBa0003O19.7),
           mRNA
          Length = 1580

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 251 tacgccggcgtcgtcgacgccgtc 274
           |||||||||| |||||||||||||
Sbjct: 214 tacgccggcgccgtcgacgccgtc 237
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>ref|NM_197599.1| Oryza sativa (japonica cultivar-group) mucin-like protein
           (OSJNBb0015I11.17), mRNA
          Length = 1110

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 253 cgccggcgtcgtcgacgccgtcgg 276
           |||||||| |||||||||||||||
Sbjct: 484 cgccggcgacgtcgacgccgtcgg 461
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>ref|NM_196979.1| Oryza sativa (japonica cultivar-group) putative alcohol oxidase
            (OSJNBa0001K12.13), mRNA
          Length = 2271

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 261  tcgtcgacgccgtcggccccggcg 284
            |||||||||||||||||| |||||
Sbjct: 1235 tcgtcgacgccgtcggccgcggcg 1258
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>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence
          Length = 3694126

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                               
Query: 254     gccggcgtcgtcgacgccgtcggccccggcgt 285
               |||||||| ||||| || ||||||||||||||
Sbjct: 1858024 gccggcgtggtcgaagcggtcggccccggcgt 1858055
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>gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome
          Length = 3814139

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 496    tggtgctgccggcggtgttg 515
              ||||||||||||||||||||
Sbjct: 730351 tggtgctgccggcggtgttg 730370
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>gb|DQ377804.1|DQ377804S1 Squirrelpox virus 1296/99, partial genome
          Length = 25260

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 221   cccccgctgcccttcgtgcc 240
             ||||||||||||||||||||
Sbjct: 24720 cccccgctgcccttcgtgcc 24701
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>gb|AC166261.6| Mus musculus  BAC RP23-343K20 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 190585

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 527   gtacagataggaaaagtttg 546
             ||||||||||||||||||||
Sbjct: 97354 gtacagataggaaaagtttg 97335
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>emb|BX640433.1| Bordetella parapertussis strain 12822, complete genome; segment 11/14
          Length = 349305

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 259    cgtcgtcgacgccgtcggcc 278
              ||||||||||||||||||||
Sbjct: 159813 cgtcgtcgacgccgtcggcc 159794
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>gb|AC163342.2| Mus musculus BAC clone RP24-115M13 from chromosome 9, complete sequence
          Length = 204620

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 482   gtgctacttgtacttggtgc 501
             ||||||||||||||||||||
Sbjct: 79463 gtgctacttgtacttggtgc 79444
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>emb|AJ630120.2| Hordeum vulgare subsp. vulgare mRNA for C2 domain-containing
           protein, clone Chromi12
          Length = 1274

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 252 acgccggcgtcgtcgacgccgtcg 275
           |||||||||||||||||| |||||
Sbjct: 403 acgccggcgtcgtcgacgacgtcg 380
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>gb|AC090041.13| Homo sapiens 12 BAC RP11-239F20 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 108979

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 409   tggagcattacctgtggcat 428
             ||||||||||||||||||||
Sbjct: 95772 tggagcattacctgtggcat 95753
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>gb|DQ397840.1| Cenarchaeum symbiosum clone C05D01, complete sequence
          Length = 37104

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 63    cgctgccgcccggcggcgag 82
             ||||||||||||||||||||
Sbjct: 31529 cgctgccgcccggcggcgag 31510
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>gb|DQ397593.2| Cenarchaeum symbiosum clone C03B12, complete sequence
          Length = 38618

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 63    cgctgccgcccggcggcgag 82
             ||||||||||||||||||||
Sbjct: 18853 cgctgccgcccggcggcgag 18872
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>gb|DQ397567.1| Cenarchaeum symbiosum clone C07B06, complete sequence
          Length = 41363

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 63    cgctgccgcccggcggcgag 82
             ||||||||||||||||||||
Sbjct: 40955 cgctgccgcccggcggcgag 40936
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>gb|AE012140.1| Xanthomonas campestris pv. campestris str. ATCC 33913,  section 48 of
             460 of the complete genome
          Length = 13420

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 153   tgcgcgtggcggcgaccagcctca 176
             |||||||||||||| |||||||||
Sbjct: 11794 tgcgcgtggcggcgcccagcctca 11771
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>gb|AC078948.11| Oryza sativa chromosome 10 BAC OSJNBa0001K12 genomic sequence, complete
             sequence
          Length = 144724

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 261   tcgtcgacgccgtcggccccggcg 284
             |||||||||||||||||| |||||
Sbjct: 87077 tcgtcgacgccgtcggccgcggcg 87100
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>gb|AC051633.7| Oryza sativa chromosome 10 BAC OSJNBb0015I11 genomic sequence, complete
              sequence
          Length = 138824

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 253    cgccggcgtcgtcgacgccgtcgg 276
              |||||||| |||||||||||||||
Sbjct: 107714 cgccggcgacgtcgacgccgtcgg 107691
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>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome
          Length = 5148708

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 153    tgcgcgtggcggcgaccagcctca 176
              |||||||||||||| |||||||||
Sbjct: 529915 tgcgcgtggcggcgcccagcctca 529892
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 251      tacgccggcgtcgtcgacgccgtc 274
                |||||||||| |||||||||||||
Sbjct: 22259842 tacgccggcgccgtcgacgccgtc 22259819



 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 253      cgccggcgtcgtcgacgccgtcgg 276
                |||||||| |||||||||||||||
Sbjct: 20706262 cgccggcgacgtcgacgccgtcgg 20706239



 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 261      tcgtcgacgccgtcggccccggcg 284
                |||||||||||||||||| |||||
Sbjct: 17105259 tcgtcgacgccgtcggccgcggcg 17105236
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 555      ttgttattgcagttgccagg 574
                ||||||||||||||||||||
Sbjct: 23622944 ttgttattgcagttgccagg 23622925
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>gb|AC060755.9|AC060755 Oryza sativa chromosome 10 BAC OSJNBa0003O19 genomic sequence, complete
             sequence
          Length = 172427

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 251   tacgccggcgtcgtcgacgccgtc 274
             |||||||||| |||||||||||||
Sbjct: 77085 tacgccggcgccgtcgacgccgtc 77062
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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 254     gccggcgtcgtcgacgccgtcggccccg 281
               |||||||| |||||||||||||| ||||
Sbjct: 5918543 gccggcgtggtcgacgccgtcgggcccg 5918570
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>dbj|AP003629.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0481H08
          Length = 146841

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 555    ttgttattgcagttgccagg 574
              ||||||||||||||||||||
Sbjct: 103908 ttgttattgcagttgccagg 103889
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>gb|AC153903.5| Mus musculus 6 BAC RP23-20C5 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 210370

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 527    gtacagataggaaaagtttg 546
              ||||||||||||||||||||
Sbjct: 161501 gtacagataggaaaagtttg 161520
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>gb|AE005133.1| Halobacterium sp. NRC-1 section 164 of 170 of the complete genome
          Length = 12130

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 252   acgccggcgtcgtcgacgccgtcg 275
             |||||| |||||||||||||||||
Sbjct: 10324 acgccgccgtcgtcgacgccgtcg 10347
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>gb|AE005054.1| Halobacterium sp. NRC-1 section 85 of 170 of the complete genome
          Length = 10173

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 256  cggcgtcgtcgacgccgtcg 275
            ||||||||||||||||||||
Sbjct: 4128 cggcgtcgtcgacgccgtcg 4109
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>dbj|AK106264.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-100-F10, full
           insert sequence
          Length = 1488

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 253 cgccggcgtcgtcgacgccgtcgg 276
           |||||||| |||||||||||||||
Sbjct: 160 cgccggcgacgtcgacgccgtcgg 137
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>gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, complete sequence
          Length = 3131724

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 247     cgactacgccggcgtcgtcgacgccgtc 274
               |||| |||||||||||||| ||||||||
Sbjct: 2278755 cgacgacgccggcgtcgtcaacgccgtc 2278782
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 251      tacgccggcgtcgtcgacgccgtc 274
                |||||||||| |||||||||||||
Sbjct: 22271910 tacgccggcgccgtcgacgccgtc 22271887



 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 253      cgccggcgtcgtcgacgccgtcgg 276
                |||||||| |||||||||||||||
Sbjct: 20717534 cgccggcgacgtcgacgccgtcgg 20717511



 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 261      tcgtcgacgccgtcggccccggcg 284
                |||||||||||||||||| |||||
Sbjct: 17114299 tcgtcgacgccgtcggccgcggcg 17114276


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,536,411
Number of Sequences: 3902068
Number of extensions: 3536411
Number of successful extensions: 67045
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 65909
Number of HSP's gapped (non-prelim): 1136
length of query: 583
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 560
effective length of database: 17,143,297,704
effective search space: 9600246714240
effective search space used: 9600246714240
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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