ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart54c11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SYD_MAGMM (Q2W3D5) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspar... 28 7.1

>SYD_MAGMM (Q2W3D5) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspartate--tRNA|
           ligase) (AspRS)
          Length = 876

 Score = 28.1 bits (61), Expect = 7.1
 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 10/39 (25%)
 Frame = -2

Query: 117 HVESADEEGQGGDAANGEHGGQR----------EQLGRN 31
           H E+A + GQGGDAA  +H   R          EQ+GR+
Sbjct: 82  HHEAAAQAGQGGDAARHQHRVDRLGQHHVRAAFEQVGRH 120


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,751,598
Number of Sequences: 219361
Number of extensions: 85308
Number of successful extensions: 543
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 484
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 541
length of database: 80,573,946
effective HSP length: 15
effective length of database: 77,283,531
effective search space used: 1854804744
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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