ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart54c11 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_493849.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1487 Score = 133 bits (67), Expect = 1e-28 Identities = 82/87 (94%) Strand = Plus / Plus Query: 33 tccgcccaagctgctcacgctgcccaccgtgctcaccattggccgcgtcgccgccctgcc 92 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct: 445 tccgcccaagctgctcacgctgcccaccgtgctcaccattggccgcgtcgccgccgtgcc 504 Query: 93 cttcctcatcagcactttctacatgga 119 |||| || ||||||||||||||||| Sbjct: 505 gctcctgataagcactttctacatgga 531
>dbj|AK070093.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023041M10, full insert sequence Length = 1607 Score = 133 bits (67), Expect = 1e-28 Identities = 82/87 (94%) Strand = Plus / Plus Query: 33 tccgcccaagctgctcacgctgcccaccgtgctcaccattggccgcgtcgccgccctgcc 92 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct: 510 tccgcccaagctgctcacgctgcccaccgtgctcaccattggccgcgtcgccgccgtgcc 569 Query: 93 cttcctcatcagcactttctacatgga 119 |||| || ||||||||||||||||| Sbjct: 570 gctcctgataagcactttctacatgga 596
>dbj|AK060009.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-302-D03, full insert sequence Length = 1037 Score = 117 bits (59), Expect = 8e-24 Identities = 74/79 (93%) Strand = Plus / Plus Query: 41 agctgctcacgctgcccaccgtgctcaccattggccgcgtcgccgccctgcccttcctca 100 ||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| | Sbjct: 1 agctgctcacgctgcccaccgtgctcaccattggccgcgtcgccgccgtgccgctcctga 60 Query: 101 tcagcactttctacatgga 119 | ||||||||||||||||| Sbjct: 61 taagcactttctacatgga 79
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 111 bits (56), Expect = 5e-22 Identities = 59/60 (98%) Strand = Plus / Minus Query: 33 tccgcccaagctgctcacgctgcccaccgtgctcaccattggccgcgtcgccgccctgcc 92 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct: 9709036 tccgcccaagctgctcacgctgcccaccgtgctcaccattggccgcgtcgccgccgtgcc 9708977
>gb|AC084405.6| Oryza sativa chromosome 3 BAC OSJNBa0044H10 genomic sequence, complete sequence Length = 165113 Score = 111 bits (56), Expect = 5e-22 Identities = 59/60 (98%) Strand = Plus / Minus Query: 33 tccgcccaagctgctcacgctgcccaccgtgctcaccattggccgcgtcgccgccctgcc 92 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct: 129935 tccgcccaagctgctcacgctgcccaccgtgctcaccattggccgcgtcgccgccgtgcc 129876
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 111 bits (56), Expect = 5e-22 Identities = 59/60 (98%) Strand = Plus / Minus Query: 33 tccgcccaagctgctcacgctgcccaccgtgctcaccattggccgcgtcgccgccctgcc 92 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct: 9707157 tccgcccaagctgctcacgctgcccaccgtgctcaccattggccgcgtcgccgccgtgcc 9707098
>gb|AY104738.1| Zea mays PCO115659 mRNA sequence Length = 1001 Score = 65.9 bits (33), Expect = 2e-08 Identities = 60/69 (86%) Strand = Plus / Plus Query: 51 gctgcccaccgtgctcaccattggccgcgtcgccgccctgcccttcctcatcagcacttt 110 ||||||||| |||||||||||||| |||||||| || |||| | || ||||||||||| Sbjct: 9 gctgcccactgtgctcaccattgggcgcgtcgctgctgtgcctcttctgatcagcacttt 68 Query: 111 ctacatgga 119 ||||||||| Sbjct: 69 ctacatgga 77
>gb|AC147052.2| Pan troglodytes BAC clone RP43-143G1 from 7, complete sequence Length = 170236 Score = 42.1 bits (21), Expect = 0.36 Identities = 24/25 (96%) Strand = Plus / Plus Query: 86 ccctgcccttcctcatcagcacttt 110 |||||||||||||| |||||||||| Sbjct: 110861 ccctgcccttcctcctcagcacttt 110885
>gb|AC146125.2| Pan troglodytes BAC clone RP43-4K13 from 7, complete sequence Length = 172424 Score = 42.1 bits (21), Expect = 0.36 Identities = 24/25 (96%) Strand = Plus / Plus Query: 86 ccctgcccttcctcatcagcacttt 110 |||||||||||||| |||||||||| Sbjct: 70526 ccctgcccttcctcctcagcacttt 70550
>emb|BX572604.1| Rhodopseudomonas palustris CGA009 complete genome; segment 12/16 Length = 348068 Score = 42.1 bits (21), Expect = 0.36 Identities = 21/21 (100%) Strand = Plus / Plus Query: 76 cgcgtcgccgccctgcccttc 96 ||||||||||||||||||||| Sbjct: 244102 cgcgtcgccgccctgcccttc 244122
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 42.1 bits (21), Expect = 0.36 Identities = 24/25 (96%) Strand = Plus / Minus Query: 44 tgctcacgctgcccaccgtgctcac 68 |||||||| |||||||||||||||| Sbjct: 703620 tgctcacgatgcccaccgtgctcac 703596 Score = 42.1 bits (21), Expect = 0.36 Identities = 24/25 (96%) Strand = Plus / Minus Query: 44 tgctcacgctgcccaccgtgctcac 68 |||||||| |||||||||||||||| Sbjct: 703602 tgctcacgatgcccaccgtgctcac 703578
>gb|AC004961.2|AC004961 Homo sapiens PAC clone RP5-1098J4 from 7, complete sequence Length = 68130 Score = 42.1 bits (21), Expect = 0.36 Identities = 24/25 (96%) Strand = Plus / Minus Query: 86 ccctgcccttcctcatcagcacttt 110 |||||||||||||| |||||||||| Sbjct: 43867 ccctgcccttcctcctcagcacttt 43843
>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome Length = 6438405 Score = 40.1 bits (20), Expect = 1.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 69 cattggccgcgtcgccgccc 88 |||||||||||||||||||| Sbjct: 591255 cattggccgcgtcgccgccc 591274
>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome Length = 4403837 Score = 40.1 bits (20), Expect = 1.4 Identities = 32/36 (88%) Strand = Plus / Plus Query: 54 gcccaccgtgctcaccattggccgcgtcgccgccct 89 |||||||||| ||||| ||| || |||||||||||| Sbjct: 3730276 gcccaccgtggtcaccgttgcccccgtcgccgccct 3730311
>gb|AC010846.13| Drosophila melanogaster clone BACR13G13, complete sequence Length = 192540 Score = 40.1 bits (20), Expect = 1.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 14 cgccgcagccgctgcccgtt 33 |||||||||||||||||||| Sbjct: 175081 cgccgcagccgctgcccgtt 175062
>gb|CP000353.1| Ralstonia metallidurans CH34 megaplasmid, complete sequence Length = 2580084 Score = 40.1 bits (20), Expect = 1.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 35 cgcccaagctgctcacgctgccca 58 |||||||||||| ||||||||||| Sbjct: 1818885 cgcccaagctgcccacgctgccca 1818908
>emb|BX842582.1| Mycobacterium tuberculosis H37Rv complete genome; segment 11/13 Length = 349563 Score = 40.1 bits (20), Expect = 1.4 Identities = 32/36 (88%) Strand = Plus / Plus Query: 54 gcccaccgtgctcaccattggccgcgtcgccgccct 89 |||||||||| ||||| ||| || |||||||||||| Sbjct: 270289 gcccaccgtggtcaccgttgcccccgtcgccgccct 270324
>emb|BX640439.1| Bordetella bronchiseptica strain RB50, complete genome; segment 3/16 Length = 346362 Score = 40.1 bits (20), Expect = 1.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 74 gccgcgtcgccgccctgccc 93 |||||||||||||||||||| Sbjct: 178850 gccgcgtcgccgccctgccc 178831
>emb|BX640425.1| Bordetella parapertussis strain 12822, complete genome; segment 3/14 Length = 348257 Score = 40.1 bits (20), Expect = 1.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 74 gccgcgtcgccgccctgccc 93 |||||||||||||||||||| Sbjct: 91671 gccgcgtcgccgccctgccc 91652
>emb|BX640420.1| Bordetella pertussis strain Tohama I, complete genome; segment 10/12 Length = 348134 Score = 40.1 bits (20), Expect = 1.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 74 gccgcgtcgccgccctgccc 93 |||||||||||||||||||| Sbjct: 167229 gccgcgtcgccgccctgccc 167210
>emb|BX248345.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 12/14 Length = 308050 Score = 40.1 bits (20), Expect = 1.4 Identities = 32/36 (88%) Strand = Plus / Plus Query: 54 gcccaccgtgctcaccattggccgcgtcgccgccct 89 |||||||||| ||||| ||| || |||||||||||| Sbjct: 248647 gcccaccgtggtcaccgttgcccccgtcgccgccct 248682
>ref|NM_167521.2| Drosophila melanogaster hangover CG32575-RA, transcript variant A (hang), mRNA Length = 6907 Score = 40.1 bits (20), Expect = 1.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 14 cgccgcagccgctgcccgtt 33 |||||||||||||||||||| Sbjct: 1567 cgccgcagccgctgcccgtt 1548
>ref|NM_167520.2| Drosophila melanogaster hangover CG32575-RB, transcript variant B (hang), mRNA Length = 6860 Score = 40.1 bits (20), Expect = 1.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 14 cgccgcagccgctgcccgtt 33 |||||||||||||||||||| Sbjct: 1567 cgccgcagccgctgcccgtt 1548
>gb|AC010920.11|AC010920 Drosophila melanogaster, chromosome X, region 14C-14D, BAC clone BACR47D09, complete sequence Length = 166935 Score = 40.1 bits (20), Expect = 1.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 14 cgccgcagccgctgcccgtt 33 |||||||||||||||||||| Sbjct: 79127 cgccgcagccgctgcccgtt 79108
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 1.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 7 gaaggggcgccgcagccgct 26 |||||||||||||||||||| Sbjct: 8747886 gaaggggcgccgcagccgct 8747867
>gb|AC098807.3| Papio anubis clone RP41-157N15, complete sequence Length = 212643 Score = 40.1 bits (20), Expect = 1.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 11 gggcgccgcagccgctgccc 30 |||||||||||||||||||| Sbjct: 176124 gggcgccgcagccgctgccc 176105
>gb|CP000009.1| Gluconobacter oxydans 621H, complete genome Length = 2702173 Score = 40.1 bits (20), Expect = 1.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 74 gccgcgtcgccgccctgccc 93 |||||||||||||||||||| Sbjct: 569650 gccgcgtcgccgccctgccc 569669
>gb|AE003502.4| Drosophila melanogaster chromosome X, section 54 of 74 of the complete sequence Length = 304712 Score = 40.1 bits (20), Expect = 1.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 14 cgccgcagccgctgcccgtt 33 |||||||||||||||||||| Sbjct: 98409 cgccgcagccgctgcccgtt 98390
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 40.1 bits (20), Expect = 1.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 6 cgaaggggcgccgcagccgc 25 |||||||||||||||||||| Sbjct: 1516169 cgaaggggcgccgcagccgc 1516150
>gb|AC170171.3| Mus musculus chromosome 1, clone wi1-1827P13, complete sequence Length = 41675 Score = 38.2 bits (19), Expect = 5.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 13 gcgccgcagccgctgcccg 31 ||||||||||||||||||| Sbjct: 28516 gcgccgcagccgctgcccg 28534
>gb|AC165964.3| Mus musculus BAC clone RP23-334H24 from chromosome 8, complete sequence Length = 233538 Score = 38.2 bits (19), Expect = 5.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 84 cgccctgcccttcctcatc 102 ||||||||||||||||||| Sbjct: 129016 cgccctgcccttcctcatc 129034
>ref|XM_526072.1| PREDICTED: Pan troglodytes gastrulation brain homeo box 2 (LOC470689), mRNA Length = 2661 Score = 38.2 bits (19), Expect = 5.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 13 gcgccgcagccgctgcccg 31 ||||||||||||||||||| Sbjct: 1852 gcgccgcagccgctgcccg 1870
>gb|AC167464.3| Mus musculus chromosome 1, clone wi1-1027B15, complete sequence Length = 39655 Score = 38.2 bits (19), Expect = 5.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 13 gcgccgcagccgctgcccg 31 ||||||||||||||||||| Sbjct: 39240 gcgccgcagccgctgcccg 39258
>ref|NM_170755.1| Mus musculus cDNA sequence BC038286 (BC038286), mRNA Length = 2556 Score = 38.2 bits (19), Expect = 5.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 13 gcgccgcagccgctgcccg 31 ||||||||||||||||||| Sbjct: 74 gcgccgcagccgctgcccg 56
>gb|AE009106.1| Agrobacterium tumefaciens str. C58 circular chromosome, section 132 of 256 of the complete sequence Length = 10755 Score = 38.2 bits (19), Expect = 5.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 78 cgtcgccgccctgcccttc 96 ||||||||||||||||||| Sbjct: 7250 cgtcgccgccctgcccttc 7232
>gb|BC070406.1| Mus musculus cDNA sequence BC038286, mRNA (cDNA clone MGC:95558 IMAGE:5707319), complete cds Length = 2455 Score = 38.2 bits (19), Expect = 5.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 13 gcgccgcagccgctgcccg 31 ||||||||||||||||||| Sbjct: 65 gcgccgcagccgctgcccg 47
>ref|XM_990937.1| PREDICTED: Mus musculus hypothetical protein LOC672075 (LOC672075), mRNA Length = 1056 Score = 38.2 bits (19), Expect = 5.6 Identities = 25/27 (92%) Strand = Plus / Minus Query: 42 gctgctcacgctgcccaccgtgctcac 68 |||||||||||||| ||| |||||||| Sbjct: 960 gctgctcacgctgctcacggtgctcac 934 Score = 38.2 bits (19), Expect = 5.6 Identities = 25/27 (92%) Strand = Plus / Minus Query: 42 gctgctcacgctgcccaccgtgctcac 68 |||||||||||||| ||| |||||||| Sbjct: 807 gctgctcacgctgctcacggtgctcac 781 Score = 38.2 bits (19), Expect = 5.6 Identities = 25/27 (92%) Strand = Plus / Minus Query: 42 gctgctcacgctgcccaccgtgctcac 68 |||||||||||||| ||| |||||||| Sbjct: 591 gctgctcacgctgctcacggtgctcac 565
>ref|XM_990090.1| PREDICTED: Mus musculus hypothetical protein LOC667357 (LOC667357), mRNA Length = 1113 Score = 38.2 bits (19), Expect = 5.6 Identities = 25/27 (92%) Strand = Plus / Minus Query: 42 gctgctcacgctgcccaccgtgctcac 68 |||||||||||||| ||| |||||||| Sbjct: 1017 gctgctcacgctgctcacggtgctcac 991 Score = 38.2 bits (19), Expect = 5.6 Identities = 25/27 (92%) Strand = Plus / Minus Query: 42 gctgctcacgctgcccaccgtgctcac 68 |||||||||||||| ||| |||||||| Sbjct: 864 gctgctcacgctgctcacggtgctcac 838 Score = 38.2 bits (19), Expect = 5.6 Identities = 25/27 (92%) Strand = Plus / Minus Query: 42 gctgctcacgctgcccaccgtgctcac 68 |||||||||||||| ||| |||||||| Sbjct: 648 gctgctcacgctgctcacggtgctcac 622
>ref|XM_543300.2| PREDICTED: Canis familiaris similar to Homeobox protein GBX-2 (Gastrulation and brain-specific homeobox protein 2) (LOC486174), mRNA Length = 1330 Score = 38.2 bits (19), Expect = 5.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 13 gcgccgcagccgctgcccg 31 ||||||||||||||||||| Sbjct: 414 gcgccgcagccgctgcccg 432
>ref|XM_449291.1| Candida glabrata CBS138, CAGL0L12034g partial mRNA Length = 3378 Score = 38.2 bits (19), Expect = 5.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 39 caagctgctcacgctgccc 57 ||||||||||||||||||| Sbjct: 2983 caagctgctcacgctgccc 2965
>gb|DQ459430.1| Synthetic construct microarray control MC28 mRNA, complete sequence Length = 1134 Score = 38.2 bits (19), Expect = 5.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 32 ttccgcccaagctgctcac 50 ||||||||||||||||||| Sbjct: 85 ttccgcccaagctgctcac 103
>emb|AL160168.11| Human DNA sequence from clone RP11-394O9 on chromosome 9, complete sequence Length = 151202 Score = 38.2 bits (19), Expect = 5.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 88 ctgcccttcctcatcagca 106 ||||||||||||||||||| Sbjct: 146108 ctgcccttcctcatcagca 146126
>gb|CP000089.1| Dechloromonas aromatica RCB, complete genome Length = 4501104 Score = 38.2 bits (19), Expect = 5.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 78 cgtcgccgccctgcccttc 96 ||||||||||||||||||| Sbjct: 3408646 cgtcgccgccctgcccttc 3408664
>emb|CR380958.1| Candida glabrata strain CBS138 chromosome L complete sequence Length = 1440588 Score = 38.2 bits (19), Expect = 5.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 39 caagctgctcacgctgccc 57 ||||||||||||||||||| Sbjct: 1294983 caagctgctcacgctgccc 1294965
>emb|BX640443.1| Bordetella bronchiseptica strain RB50, complete genome; segment 7/16 Length = 346274 Score = 38.2 bits (19), Expect = 5.6 Identities = 22/23 (95%) Strand = Plus / Minus Query: 71 ttggccgcgtcgccgccctgccc 93 |||||||| |||||||||||||| Sbjct: 194764 ttggccgcttcgccgccctgccc 194742
>emb|BX640428.1| Bordetella parapertussis strain 12822, complete genome; segment 6/14 Length = 348525 Score = 38.2 bits (19), Expect = 5.6 Identities = 22/23 (95%) Strand = Plus / Minus Query: 71 ttggccgcgtcgccgccctgccc 93 |||||||| |||||||||||||| Sbjct: 342147 ttggccgcttcgccgccctgccc 342125
>emb|AL939117.1|SCO939117 Streptomyces coelicolor A3(2) complete genome; segment 14/29 Length = 309050 Score = 38.2 bits (19), Expect = 5.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 73 ggccgcgtcgccgccctgc 91 ||||||||||||||||||| Sbjct: 197519 ggccgcgtcgccgccctgc 197537
>gb|AE007869.1| Agrobacterium tumefaciens str. C58, complete genome Length = 2841581 Score = 38.2 bits (19), Expect = 5.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 78 cgtcgccgccctgcccttc 96 ||||||||||||||||||| Sbjct: 1460928 cgtcgccgccctgcccttc 1460910
>dbj|AK160400.1| Mus musculus adult male cerebellum cDNA, RIKEN full-length enriched library, clone:1500002B04 product:hypothetical protein, full insert sequence Length = 2507 Score = 38.2 bits (19), Expect = 5.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 13 gcgccgcagccgctgcccg 31 ||||||||||||||||||| Sbjct: 27 gcgccgcagccgctgcccg 9
>dbj|AK172093.1| Mus musculus activated spleen cDNA, RIKEN full-length enriched library, clone:F830035O16 product:hypothetical protein, full insert sequence Length = 2550 Score = 38.2 bits (19), Expect = 5.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 13 gcgccgcagccgctgcccg 31 ||||||||||||||||||| Sbjct: 70 gcgccgcagccgctgcccg 52
>dbj|AK165957.1| Mus musculus lung RCB-0558 LLC cDNA, RIKEN full-length enriched library, clone:G730023H02 product:hypothetical protein, full insert sequence Length = 2420 Score = 38.2 bits (19), Expect = 5.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 13 gcgccgcagccgctgcccg 31 ||||||||||||||||||| Sbjct: 52 gcgccgcagccgctgcccg 34
>gb|AC173548.3| Mus musculus chromosome 1, clone wi1-303A11, complete sequence Length = 43859 Score = 38.2 bits (19), Expect = 5.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 13 gcgccgcagccgctgcccg 31 ||||||||||||||||||| Sbjct: 18178 gcgccgcagccgctgcccg 18160
>dbj|AK034667.1| Mus musculus 12 days embryo embryonic body between diaphragm region and neck cDNA, RIKEN full-length enriched library, clone:9430022K03 product:hypothetical protein, full insert sequence Length = 2556 Score = 38.2 bits (19), Expect = 5.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 13 gcgccgcagccgctgcccg 31 ||||||||||||||||||| Sbjct: 74 gcgccgcagccgctgcccg 56
>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome Length = 2909809 Score = 38.2 bits (19), Expect = 5.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 73 ggccgcgtcgccgccctgc 91 ||||||||||||||||||| Sbjct: 1225987 ggccgcgtcgccgccctgc 1226005
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 38.2 bits (19), Expect = 5.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 38 ccaagctgctcacgctgcc 56 ||||||||||||||||||| Sbjct: 10263037 ccaagctgctcacgctgcc 10263055
>gb|AC153556.5| Mus musculus 10 BAC RP23-395M5 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 184751 Score = 38.2 bits (19), Expect = 5.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 84 cgccctgcccttcctcatc 102 ||||||||||||||||||| Sbjct: 164573 cgccctgcccttcctcatc 164555
>dbj|AB116646.1| Streptomyces albulus kat gene for kanamycin acetyltransferase, complete cds Length = 5090 Score = 38.2 bits (19), Expect = 5.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 74 gccgcgtcgccgccctgcc 92 ||||||||||||||||||| Sbjct: 989 gccgcgtcgccgccctgcc 1007
>gb|AC079135.6| Homo sapiens BAC clone RP11-122C15 from 2, complete sequence Length = 88655 Score = 38.2 bits (19), Expect = 5.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 13 gcgccgcagccgctgcccg 31 ||||||||||||||||||| Sbjct: 35333 gcgccgcagccgctgcccg 35315
>gb|AE004693.1| Pseudomonas aeruginosa PAO1, section 254 of 529 of the complete genome Length = 10188 Score = 38.2 bits (19), Expect = 5.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 82 gccgccctgcccttcctca 100 ||||||||||||||||||| Sbjct: 6393 gccgccctgcccttcctca 6411
>ref|XM_343592.2| PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1300010M03 (predicted) (LOC363252), mRNA Length = 2436 Score = 38.2 bits (19), Expect = 5.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 13 gcgccgcagccgctgcccg 31 ||||||||||||||||||| Sbjct: 73 gcgccgcagccgctgcccg 55
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 38.2 bits (19), Expect = 5.6 Identities = 22/23 (95%) Strand = Plus / Minus Query: 2 caagcgaaggggcgccgcagccg 24 |||||||||||||| |||||||| Sbjct: 1292827 caagcgaaggggcgtcgcagccg 1292805
>dbj|AP005536.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0055M07 Length = 150901 Score = 38.2 bits (19), Expect = 5.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 38 ccaagctgctcacgctgcc 56 ||||||||||||||||||| Sbjct: 135403 ccaagctgctcacgctgcc 135421
>dbj|AP004872.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0444A09 Length = 125900 Score = 38.2 bits (19), Expect = 5.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 38 ccaagctgctcacgctgcc 56 ||||||||||||||||||| Sbjct: 28847 ccaagctgctcacgctgcc 28865
>emb|AL807810.19| Mouse DNA sequence from clone RP23-186F3 on chromosome 4, complete sequence Length = 165488 Score = 38.2 bits (19), Expect = 5.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 89 tgcccttcctcatcagcac 107 ||||||||||||||||||| Sbjct: 53441 tgcccttcctcatcagcac 53423
>ref|XM_552266.1| Anopheles gambiae str. PEST ENSANGP00000028812 (ENSANGG00000006547), partial mRNA Length = 1989 Score = 38.2 bits (19), Expect = 5.6 Identities = 25/27 (92%) Strand = Plus / Plus Query: 23 cgctgcccgttccgcccaagctgctca 49 ||||| ||| ||||||||||||||||| Sbjct: 53 cgctggccgatccgcccaagctgctca 79
>ref|XM_320565.2| Anopheles gambiae str. PEST ENSANGP00000008692 (ENSANGG00000006547), partial mRNA Length = 1434 Score = 38.2 bits (19), Expect = 5.6 Identities = 25/27 (92%) Strand = Plus / Plus Query: 23 cgctgcccgttccgcccaagctgctca 49 ||||| ||| ||||||||||||||||| Sbjct: 56 cgctggccgatccgcccaagctgctca 82
>emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid complete sequence Length = 2094509 Score = 38.2 bits (19), Expect = 5.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 13 gcgccgcagccgctgcccg 31 ||||||||||||||||||| Sbjct: 1302955 gcgccgcagccgctgcccg 1302937
>gb|AF118452.1|AF118452 Homo sapiens homeobox protein GBX2 mRNA, complete cds Length = 1174 Score = 38.2 bits (19), Expect = 5.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 13 gcgccgcagccgctgcccg 31 ||||||||||||||||||| Sbjct: 420 gcgccgcagccgctgcccg 438
>ref|NM_001485.2| Homo sapiens gastrulation brain homeobox 2 (GBX2), mRNA Length = 1335 Score = 38.2 bits (19), Expect = 5.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 13 gcgccgcagccgctgcccg 31 ||||||||||||||||||| Sbjct: 420 gcgccgcagccgctgcccg 438
>gb|U31468.1|HSU31468 Homo sapiens homeobox protein (GBX2) gene, complete cds Length = 2142 Score = 38.2 bits (19), Expect = 5.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 13 gcgccgcagccgctgcccg 31 ||||||||||||||||||| Sbjct: 802 gcgccgcagccgctgcccg 820
>emb|AL844856.6| Mouse DNA sequence from clone RP23-377G1 on chromosome 4, complete sequence Length = 183318 Score = 38.2 bits (19), Expect = 5.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 88 ctgcccttcctcatcagca 106 ||||||||||||||||||| Sbjct: 5602 ctgcccttcctcatcagca 5620
>emb|AL928667.4| Mouse DNA sequence from clone RP23-139J18 on chromosome 4, complete sequence Length = 121094 Score = 38.2 bits (19), Expect = 5.6 Identities = 25/27 (92%) Strand = Plus / Plus Query: 42 gctgctcacgctgcccaccgtgctcac 68 |||||||||||||| ||| |||||||| Sbjct: 72721 gctgctcacgctgctcacggtgctcac 72747 Score = 38.2 bits (19), Expect = 5.6 Identities = 25/27 (92%) Strand = Plus / Plus Query: 42 gctgctcacgctgcccaccgtgctcac 68 |||||||||||||| ||| |||||||| Sbjct: 72505 gctgctcacgctgctcacggtgctcac 72531 Score = 38.2 bits (19), Expect = 5.6 Identities = 25/27 (92%) Strand = Plus / Plus Query: 42 gctgctcacgctgcccaccgtgctcac 68 |||||||||||||| ||| |||||||| Sbjct: 72352 gctgctcacgctgctcacggtgctcac 72378
>gb|M10012.1|CHKCKMX Chicken creatine kinase (muscle isoform) mRNA, complete cds Length = 1310 Score = 38.2 bits (19), Expect = 5.6 Identities = 28/31 (90%) Strand = Plus / Plus Query: 34 ccgcccaagctgctcacgctgcccaccgtgc 64 ||||||| ||| | ||||||||||||||||| Sbjct: 1217 ccgcccacgctccccacgctgcccaccgtgc 1247 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 878,973 Number of Sequences: 3902068 Number of extensions: 878973 Number of successful extensions: 76306 Number of sequences better than 10.0: 73 Number of HSP's better than 10.0 without gapping: 73 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 74722 Number of HSP's gapped (non-prelim): 1583 length of query: 121 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 100 effective length of database: 17,151,101,840 effective search space: 1715110184000 effective search space used: 1715110184000 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)
