ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart54c08 |
|---|---|
| Clone Library Name | barley_pub |
>CHIT1_TULBA (Q9SLP4) Chitinase 1 precursor (EC 3.2.1.14) (Tulip bulb| chitinase-1) (TBC-1) Length = 314 Score = 144 bits (363), Expect = 1e-34 Identities = 73/128 (57%), Positives = 92/128 (71%) Frame = +3 Query: 108 IAMTNGYLFREYIGAQFTGVRFSDVPVNTGVSFHYILAFAIDYTPVAQKPTPTPTNGAFS 287 + +T+ +FREYIG+QF V+FSDVP+N V FH+ILAFAIDYT +PTPTNG F Sbjct: 21 LPLTSALVFREYIGSQFNDVKFSDVPINPDVDFHFILAFAIDYT---SGSSPTPTNGNFK 77 Query: 288 AFWDTASLSRADVAAIKAAHPNVSVMVGLGGDSVQDIVKVSFAPNSVDSWVANAVASLSR 467 FWDT +LS + VAA+K H NV V + LGGDSV V F+P+SV SWV NAV+SL+R Sbjct: 78 PFWDTNNLSPSQVAAVKRTHSNVKVSLSLGGDSVGG-KNVFFSPSSVSSWVENAVSSLTR 136 Query: 468 LINEYGLD 491 +I +Y LD Sbjct: 137 IIKQYHLD 144
>CHIT2_TULBA (Q7M443) Chitinase 2 (EC 3.2.1.14) (Tulip bulb chitinase-2) (TBC-2)| Length = 275 Score = 139 bits (350), Expect = 4e-33 Identities = 73/121 (60%), Positives = 89/121 (73%) Frame = +3 Query: 129 LFREYIGAQFTGVRFSDVPVNTGVSFHYILAFAIDYTPVAQKPTPTPTNGAFSAFWDTAS 308 LFREYIGAQF V+FSDVP+N V FH+ILAFAIDYT +PTPTNG F+ FWDT + Sbjct: 2 LFREYIGAQFNDVKFSDVPINPNVDFHFILAFAIDYT---SGSSPTPTNGNFNPFWDTNN 58 Query: 309 LSRADVAAIKAAHPNVSVMVGLGGDSVQDIVKVSFAPNSVDSWVANAVASLSRLINEYGL 488 LS + VAAIK + NV V V LGG+SV +V F P+SV SWV NAV+SL+++I +Y L Sbjct: 59 LSPSQVAAIKRTYNNVKVSVSLGGNSVGG-ERVFFNPSSVSSWVDNAVSSLTKIIKQYHL 117 Query: 489 D 491 D Sbjct: 118 D 118
>RUAP_SOYBN (P39657) RuBisCO-associated protein| Length = 283 Score = 42.7 bits (99), Expect = 5e-04 Identities = 32/108 (29%), Positives = 47/108 (43%), Gaps = 4/108 (3%) Frame = +3 Query: 180 VPVNTGVSFHYILAFAIDYTPVAQKPTPTPTNGAFSAFWDTASLSRADVAAIKAAHP--- 350 +P N F L+ A DY TNG F +WDT ++ + K + Sbjct: 22 IPENI-TEFQVTLSLARDYDG------NNSTNGKFIPYWDTEKVTPEVIKKFKKKYEPTA 74 Query: 351 -NVSVMVGLGGDSVQDIVKVSFAPNSVDSWVANAVASLSRLINEYGLD 491 V V+V +G + Q + NS ++WV+ A ASL +I Y LD Sbjct: 75 LRVKVLVSIGNKNKQFPFTIGSDSNS-EAWVSEATASLKSIIKTYNLD 121
>SFRIP_HUMAN (Q99590) SFRS2-interacting protein (Splicing factor,| arginine/serine-rich 2-interacting protein) (SC35-interacting protein 1) (CTD-associated SR protein 11) (Splicing regulatory protein 129) (SRrp129) (NY-REN-40 antigen) Length = 1148 Score = 37.0 bits (84), Expect = 0.029 Identities = 38/125 (30%), Positives = 50/125 (40%), Gaps = 16/125 (12%) Frame = +3 Query: 60 SGVPLI-----------LTPRPAPARSIAMTNGYLFREYIGAQFTGVRFSDVPVNTGVSF 206 +GVPL+ L P P P N YI +Q G + +P ++ VS Sbjct: 944 TGVPLMQVATPTSVSQGLPPPPPPPPPSQQVN------YIASQPDGKQLQGIPSSSHVSN 997 Query: 207 HYILAFAIDYTPVAQKPTPTPTN-----GAFSAFWDTASLSRADVAAIKAAHPNVSVMVG 371 + TPV PT P N G S ++S S+A AA+K A VSV V Sbjct: 998 NMS-------TPVLPAPTAAPGNTGMVQGPSSGNTSSSSHSKASNAAVKLAESKVSVAVE 1050 Query: 372 LGGDS 386 DS Sbjct: 1051 ASADS 1055
>RS15_YEAST (Q01855) 40S ribosomal protein S15 (S21) (YS21) (RP52) (RIG| protein) Length = 142 Score = 32.7 bits (73), Expect = 0.54 Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 3/56 (5%) Frame = +3 Query: 87 RPAPARSIAMTNGYLFREYIGAQ---FTGVRFSDVPVNTGVSFHYILAFAIDYTPV 245 +PAP R+ M N + E IG+ + G F+ V + + HY+ F+I YTPV Sbjct: 72 KPAPVRT-HMRNMIIVPEMIGSVVGIYNGKAFNQVEIRPEMLGHYLGEFSITYTPV 126
>Y2598_MYCBO (P65010) Hypothetical protein Mb2598c| Length = 341 Score = 32.7 bits (73), Expect = 0.54 Identities = 21/55 (38%), Positives = 27/55 (49%) Frame = -3 Query: 430 STELGAKETLTMSCTLSPPRPTMTLTFGCAALMAATSARDRLAVSQNALNAPLVG 266 S +LG L SC L+ RP+ T T G A A A+ RL + L P+VG Sbjct: 62 SDQLGG---LCSSCVLTIERPSDTNTAGLAEFARAEGAKRRLIAELHELKLPIVG 113
>Y2568_MYCTU (P65009) Hypothetical protein Rv2568c/MT2644| Length = 341 Score = 32.7 bits (73), Expect = 0.54 Identities = 21/55 (38%), Positives = 27/55 (49%) Frame = -3 Query: 430 STELGAKETLTMSCTLSPPRPTMTLTFGCAALMAATSARDRLAVSQNALNAPLVG 266 S +LG L SC L+ RP+ T T G A A A+ RL + L P+VG Sbjct: 62 SDQLGG---LCSSCVLTIERPSDTNTAGLAEFARAEGAKRRLIAELHELKLPIVG 113
>RAI1_HUMAN (Q7Z5J4) Retinoic acid-induced protein 1| Length = 1906 Score = 29.6 bits (65), Expect = 4.6 Identities = 14/30 (46%), Positives = 15/30 (50%) Frame = +3 Query: 240 PVAQKPTPTPTNGAFSAFWDTASLSRADVA 329 P P P PT AF F DT + S AD A Sbjct: 712 PTLGVPAPDPTTAAFDCFPDTTAASSADSA 741
>ILVC_TREPR (Q8KTR6) Ketol-acid reductoisomerase (EC 1.1.1.86)| (Acetohydroxy-acid isomeroreductase) (Alpha-keto-beta-hydroxylacil reductoisomerase) Length = 328 Score = 29.6 bits (65), Expect = 4.6 Identities = 12/35 (34%), Positives = 23/35 (65%) Frame = +3 Query: 33 RSHCIYQQQSGVPLILTPRPAPARSIAMTNGYLFR 137 R+H + + SGV +++ RP P+ AM++G++ R Sbjct: 29 RAHAMNLRDSGVEVVIGLRPGPSFDAAMSDGFMPR 63
>MTRC_METKA (O32865) Tetrahydromethanopterin S-methyltransferase subunit C (EC| 2.1.1.86) (N5-methyltetrahydromethanopterin--coenzyme M methyltransferase subunit C) Length = 270 Score = 29.6 bits (65), Expect = 4.6 Identities = 15/56 (26%), Positives = 28/56 (50%) Frame = +3 Query: 294 WDTASLSRADVAAIKAAHPNVSVMVGLGGDSVQDIVKVSFAPNSVDSWVANAVASL 461 W ++ R + P++ M GLGG SV I+ + + N+V +W A + ++ Sbjct: 63 WGADAVRRVAGYGLGTGVPSIGFM-GLGGGSVAAILAAALSGNTVPAWAAAIIGTV 117
>RS15_ELAOL (Q945U1) 40S ribosomal protein S15| Length = 153 Score = 28.9 bits (63), Expect = 7.8 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 3/56 (5%) Frame = +3 Query: 87 RPAPARSIAMTNGYLFREYIGA---QFTGVRFSDVPVNTGVSFHYILAFAIDYTPV 245 +P P R+ + N + E IG+ + G F+ V + + HY+ F+I Y PV Sbjct: 80 KPEPVRT-HLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPV 134
>RS15_PICMA (O65059) 40S ribosomal protein S15| Length = 151 Score = 28.9 bits (63), Expect = 7.8 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 3/56 (5%) Frame = +3 Query: 87 RPAPARSIAMTNGYLFREYIGA---QFTGVRFSDVPVNTGVSFHYILAFAIDYTPV 245 +P P R+ + N + E IG+ + G F+ V + + HY+ F+I Y PV Sbjct: 78 KPEPVRT-HLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPV 132
>RS15D_ARATH (Q9FY64) 40S ribosomal protein S15-4| Length = 152 Score = 28.9 bits (63), Expect = 7.8 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 3/56 (5%) Frame = +3 Query: 87 RPAPARSIAMTNGYLFREYIGA---QFTGVRFSDVPVNTGVSFHYILAFAIDYTPV 245 +P P R+ + N + E IG+ + G F+ V + + HY+ F+I Y PV Sbjct: 79 KPEPVRT-HLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPV 133
>RS151_ARATH (Q08112) 40S ribosomal protein S15-1| Length = 152 Score = 28.9 bits (63), Expect = 7.8 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 3/56 (5%) Frame = +3 Query: 87 RPAPARSIAMTNGYLFREYIGA---QFTGVRFSDVPVNTGVSFHYILAFAIDYTPV 245 +P P R+ + N + E IG+ + G F+ V + + HY+ F+I Y PV Sbjct: 79 KPEPVRT-HLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPV 133 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 49,325,930 Number of Sequences: 219361 Number of extensions: 895570 Number of successful extensions: 3149 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 3072 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3144 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3478785780 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
