ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart54c07 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_190147.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1398 Score = 67.9 bits (34), Expect = 3e-08 Identities = 79/94 (84%) Strand = Plus / Plus Query: 349 gaagatgaggaatacacagcgaaaaccatctattctcaacttcgatgctggatgtggatc 408 |||||||||||| | ||| || ||| ||||| ||||||||| ||||| ||||| |||| Sbjct: 3 gaagatgaggaacaaacaacggaaatcatctgctctcaactttgatgcaggatgccgatc 62 Query: 409 ttccttatcttttattgtaatgggcttggtggga 442 |||||| |||||||||||| | ||||||||||| Sbjct: 63 ttccttgtcttttattgtatggagcttggtggga 96 Score = 42.1 bits (21), Expect = 2.0 Identities = 48/57 (84%) Strand = Plus / Plus Query: 522 ctgccaccagagaattggaagaggttgaggaagagcactttcggttgccacctcctc 578 |||| |||||||| || |||||| ||||||| || || || || ||||||||||||| Sbjct: 176 ctgctaccagagagttagaagagattgaggaggaacatttccgcttgccacctcctc 232
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 67.9 bits (34), Expect = 3e-08 Identities = 79/94 (84%) Strand = Plus / Plus Query: 349 gaagatgaggaatacacagcgaaaaccatctattctcaacttcgatgctggatgtggatc 408 |||||||||||| | ||| || ||| ||||| ||||||||| ||||| ||||| |||| Sbjct: 38148443 gaagatgaggaacaaacaacggaaatcatctgctctcaactttgatgcaggatgccgatc 38148502 Query: 409 ttccttatcttttattgtaatgggcttggtggga 442 |||||| |||||||||||| | ||||||||||| Sbjct: 38148503 ttccttgtcttttattgtatggagcttggtggga 38148536 Score = 42.1 bits (21), Expect = 2.0 Identities = 48/57 (84%) Strand = Plus / Plus Query: 522 ctgccaccagagaattggaagaggttgaggaagagcactttcggttgccacctcctc 578 |||| |||||||| || |||||| ||||||| || || || || ||||||||||||| Sbjct: 38148616 ctgctaccagagagttagaagagattgaggaggaacatttccgcttgccacctcctc 38148672
>dbj|AP003261.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0471B04 Length = 138025 Score = 67.9 bits (34), Expect = 3e-08 Identities = 79/94 (84%) Strand = Plus / Plus Query: 349 gaagatgaggaatacacagcgaaaaccatctattctcaacttcgatgctggatgtggatc 408 |||||||||||| | ||| || ||| ||||| ||||||||| ||||| ||||| |||| Sbjct: 116477 gaagatgaggaacaaacaacggaaatcatctgctctcaactttgatgcaggatgccgatc 116536 Query: 409 ttccttatcttttattgtaatgggcttggtggga 442 |||||| |||||||||||| | ||||||||||| Sbjct: 116537 ttccttgtcttttattgtatggagcttggtggga 116570 Score = 42.1 bits (21), Expect = 2.0 Identities = 48/57 (84%) Strand = Plus / Plus Query: 522 ctgccaccagagaattggaagaggttgaggaagagcactttcggttgccacctcctc 578 |||| |||||||| || |||||| ||||||| || || || || ||||||||||||| Sbjct: 116650 ctgctaccagagagttagaagagattgaggaggaacatttccgcttgccacctcctc 116706
>dbj|AP003227.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0018C10 Length = 200183 Score = 67.9 bits (34), Expect = 3e-08 Identities = 79/94 (84%) Strand = Plus / Plus Query: 349 gaagatgaggaatacacagcgaaaaccatctattctcaacttcgatgctggatgtggatc 408 |||||||||||| | ||| || ||| ||||| ||||||||| ||||| ||||| |||| Sbjct: 67677 gaagatgaggaacaaacaacggaaatcatctgctctcaactttgatgcaggatgccgatc 67736 Query: 409 ttccttatcttttattgtaatgggcttggtggga 442 |||||| |||||||||||| | ||||||||||| Sbjct: 67737 ttccttgtcttttattgtatggagcttggtggga 67770 Score = 42.1 bits (21), Expect = 2.0 Identities = 48/57 (84%) Strand = Plus / Plus Query: 522 ctgccaccagagaattggaagaggttgaggaagagcactttcggttgccacctcctc 578 |||| |||||||| || |||||| ||||||| || || || || ||||||||||||| Sbjct: 67850 ctgctaccagagagttagaagagattgaggaggaacatttccgcttgccacctcctc 67906
>dbj|AK065053.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001I24, full insert sequence Length = 1842 Score = 67.9 bits (34), Expect = 3e-08 Identities = 79/94 (84%) Strand = Plus / Plus Query: 349 gaagatgaggaatacacagcgaaaaccatctattctcaacttcgatgctggatgtggatc 408 |||||||||||| | ||| || ||| ||||| ||||||||| ||||| ||||| |||| Sbjct: 212 gaagatgaggaacaaacaacggaaatcatctgctctcaactttgatgcaggatgccgatc 271 Query: 409 ttccttatcttttattgtaatgggcttggtggga 442 |||||| |||||||||||| | ||||||||||| Sbjct: 272 ttccttgtcttttattgtatggagcttggtggga 305 Score = 42.1 bits (21), Expect = 2.0 Identities = 48/57 (84%) Strand = Plus / Plus Query: 522 ctgccaccagagaattggaagaggttgaggaagagcactttcggttgccacctcctc 578 |||| |||||||| || |||||| ||||||| || || || || ||||||||||||| Sbjct: 385 ctgctaccagagagttagaagagattgaggaggaacatttccgcttgccacctcctc 441
>ref|NM_011305.3| Mus musculus retinoid X receptor alpha (Rxra), mRNA Length = 5267 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Plus Query: 153 cgcgctgccgccctgctgctccg 175 ||||||||||||||||||||||| Sbjct: 180 cgcgctgccgccctgctgctccg 202
>emb|X66223.1|MMRXRAMR M.musculus mRNA for retinoid X receptor-alpha (mRXR-alpha) Length = 2088 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Plus Query: 153 cgcgctgccgccctgctgctccg 175 ||||||||||||||||||||||| Sbjct: 125 cgcgctgccgccctgctgctccg 147
>dbj|AK144675.1| Mus musculus lung RCB-0558 LLC cDNA, RIKEN full-length enriched library, clone:G730022A05 product:retinoid X receptor alpha, full insert sequence Length = 4882 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Plus Query: 153 cgcgctgccgccctgctgctccg 175 ||||||||||||||||||||||| Sbjct: 182 cgcgctgccgccctgctgctccg 204
>emb|AL772166.15| Mouse DNA sequence from clone RP23-413I12 on chromosome 2, complete sequence Length = 184547 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Plus Query: 153 cgcgctgccgccctgctgctccg 175 ||||||||||||||||||||||| Sbjct: 67422 cgcgctgccgccctgctgctccg 67444
>gb|M84817.1|MUSRXRA Mouse retinoid X receptor alpha (RXR-alpha) mRNA, complete cds Length = 1883 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Plus Query: 153 cgcgctgccgccctgctgctccg 175 ||||||||||||||||||||||| Sbjct: 43 cgcgctgccgccctgctgctccg 65
>dbj|AK031034.1| Mus musculus adult male thymus cDNA, RIKEN full-length enriched library, clone:5832416E11 product:retinoid X receptor alpha, full insert sequence Length = 4755 Score = 44.1 bits (22), Expect = 0.50 Identities = 22/22 (100%) Strand = Plus / Plus Query: 153 cgcgctgccgccctgctgctcc 174 |||||||||||||||||||||| Sbjct: 49 cgcgctgccgccctgctgctcc 70
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 44.1 bits (22), Expect = 0.50 Identities = 25/26 (96%) Strand = Plus / Minus Query: 93 cctccaggcctccaccgtgctcctcc 118 |||||||| ||||||||||||||||| Sbjct: 10211274 cctccagggctccaccgtgctcctcc 10211249
>dbj|AK109655.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-140-F01, full insert sequence Length = 928 Score = 44.1 bits (22), Expect = 0.50 Identities = 25/26 (96%) Strand = Plus / Plus Query: 93 cctccaggcctccaccgtgctcctcc 118 |||||||| ||||||||||||||||| Sbjct: 184 cctccagggctccaccgtgctcctcc 209
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 44.1 bits (22), Expect = 0.50 Identities = 25/26 (96%) Strand = Plus / Minus Query: 93 cctccaggcctccaccgtgctcctcc 118 |||||||| ||||||||||||||||| Sbjct: 10211156 cctccagggctccaccgtgctcctcc 10211131
>emb|AL732643.6|CNS08C9I Oryza sativa chromosome 12, . BAC OSJNBa0094N04 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 92382 Score = 44.1 bits (22), Expect = 0.50 Identities = 25/26 (96%) Strand = Plus / Minus Query: 93 cctccaggcctccaccgtgctcctcc 118 |||||||| ||||||||||||||||| Sbjct: 75476 cctccagggctccaccgtgctcctcc 75451
>ref|XM_529204.1| PREDICTED: Pan troglodytes similar to B-cell receptor-associated protein 31 (BCR-associated protein Bap31) (p28 Bap31) (CDM protein) (6C6-AG tumor-associated antigen) (DXS1357E) (LOC473831), mRNA Length = 834 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 58 ggcgtctcctcctctccaccttctc 82 |||||||| |||||||||||||||| Sbjct: 182 ggcgtctcttcctctccaccttctc 206
>ref|XM_521321.1| PREDICTED: Pan troglodytes similar to ATP-binding cassette, sub-family D (ALD), member 1; adrenoleukodystrophy protein; adrenoleukodystrophy (LOC465923), mRNA Length = 1498 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 58 ggcgtctcctcctctccaccttctc 82 |||||||| |||||||||||||||| Sbjct: 76 ggcgtctcttcctctccaccttctc 52
>ref|XM_472776.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 489 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 445 caccctcattgccggcctatt 465 ||||||||||||||||||||| Sbjct: 441 caccctcattgccggcctatt 461
>gb|AC151486.1| Pan troglodytes chromosome X clone PTB-029D14 map human ortholog q28, complete sequence Length = 154019 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 58 ggcgtctcctcctctccaccttctc 82 |||||||| |||||||||||||||| Sbjct: 12045 ggcgtctcttcctctccaccttctc 12021
>gb|BC025358.1| Homo sapiens ATP-binding cassette, sub-family D (ALD), member 1, mRNA (cDNA clone MGC:39449 IMAGE:4907640), complete cds Length = 3697 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 58 ggcgtctcctcctctccaccttctc 82 |||||||| |||||||||||||||| Sbjct: 94 ggcgtctcttcctctccaccttctc 70
>gb|BC015541.1| Homo sapiens ATP-binding cassette, sub-family D (ALD), member 1, mRNA (cDNA clone MGC:9595 IMAGE:3896490), complete cds Length = 3643 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 58 ggcgtctcctcctctccaccttctc 82 |||||||| |||||||||||||||| Sbjct: 75 ggcgtctcttcctctccaccttctc 51
>gb|BC029169.1| Mus musculus cDNA sequence BC029169, mRNA (cDNA clone MGC:36952 IMAGE:4947019), complete cds Length = 2614 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 53 cctcaggcgtctcctcctctc 73 ||||||||||||||||||||| Sbjct: 1289 cctcaggcgtctcctcctctc 1269
>gb|U52111.3| Homo sapiens chromosome X clone Qc-7G6, QLL-F1720, QLL-C1335, Qc-8B7, Qc-11H12, Qc-7F6, QLL-E153, Qc-10E8, Qc-10B7 map q28, complete sequence Length = 247592 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 58 ggcgtctcctcctctccaccttctc 82 |||||||| |||||||||||||||| Sbjct: 108170 ggcgtctcttcctctccaccttctc 108146
>ref|XM_502288.1| Yarrowia lipolytica CLIB122, YALI0D01485g predicted mRNA Length = 1206 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 525 ccaccagagaattggaagagg 545 ||||||||||||||||||||| Sbjct: 676 ccaccagagaattggaagagg 656
>emb|CR522870.1| Desulfotalea psychrophila LSv54 chromosome Length = 3523383 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 418 ttttattgtaatgggcttggt 438 ||||||||||||||||||||| Sbjct: 2330704 ttttattgtaatgggcttggt 2330684
>emb|AL663017.3|OSJN00149 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0060P14, complete sequence Length = 139418 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 445 caccctcattgccggcctatt 465 ||||||||||||||||||||| Sbjct: 28240 caccctcattgccggcctatt 28220
>emb|Z21876.1|HSXLALDA H.sapiens X-linked ALD gene Length = 2750 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 58 ggcgtctcctcctctccaccttctc 82 |||||||| |||||||||||||||| Sbjct: 81 ggcgtctcttcctctccaccttctc 57
>dbj|AK142932.1| Mus musculus 0 day neonate lung cDNA, RIKEN full-length enriched library, clone:E030006B12 product:Protein FAM20A precursor, full insert sequence Length = 3088 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 53 cctcaggcgtctcctcctctc 73 ||||||||||||||||||||| Sbjct: 1313 cctcaggcgtctcctcctctc 1293
>gb|AC099494.3| Homo sapiens chromosome 16 clone RP11-1102P22, complete sequence Length = 143557 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 65 cctcctctccaccttctcacc 85 ||||||||||||||||||||| Sbjct: 134389 cctcctctccaccttctcacc 134409
>ref|NM_000033.2| Homo sapiens ATP-binding cassette, sub-family D (ALD), member 1 (ABCD1), mRNA Length = 3616 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 58 ggcgtctcctcctctccaccttctc 82 |||||||| |||||||||||||||| Sbjct: 81 ggcgtctcttcctctccaccttctc 57
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 445 caccctcattgccggcctatt 465 ||||||||||||||||||||| Sbjct: 23138048 caccctcattgccggcctatt 23138028
>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome Length = 4659019 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 121 agctccaccccgccgccgccc 141 ||||||||||||||||||||| Sbjct: 2814978 agctccaccccgccgccgccc 2814998
>emb|Z31348.1|HSALDG1 H.sapiens ALD gene promoter and exon1 Length = 2044 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 58 ggcgtctcctcctctccaccttctc 82 |||||||| |||||||||||||||| Sbjct: 689 ggcgtctcttcctctccaccttctc 665
>emb|AL928740.6| Zebrafish DNA sequence from clone CH211-129O13, complete sequence Length = 177281 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 537 tggaagaggttgaggaagagc 557 ||||||||||||||||||||| Sbjct: 124821 tggaagaggttgaggaagagc 124801
>ref|NM_153782.1| Mus musculus cDNA sequence BC029169 (BC029169), mRNA Length = 2614 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 53 cctcaggcgtctcctcctctc 73 ||||||||||||||||||||| Sbjct: 1289 cctcaggcgtctcctcctctc 1269
>emb|CR382130.1| Yarrowia lipolytica chromosome D of strain CLIB122 of Yarrowia lipolytica Length = 3633272 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 525 ccaccagagaattggaagagg 545 ||||||||||||||||||||| Sbjct: 177269 ccaccagagaattggaagagg 177289
>emb|AL691448.24| Mouse DNA sequence from clone RP23-103A1 on chromosome 11, complete sequence Length = 197959 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 53 cctcaggcgtctcctcctctc 73 ||||||||||||||||||||| Sbjct: 2022 cctcaggcgtctcctcctctc 2042
>ref|XM_523965.1| PREDICTED: Pan troglodytes similar to hypothetical protein (LOC468576), mRNA Length = 2742 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 131 cgccgccgcccgctcttccc 150 |||||||||||||||||||| Sbjct: 2278 cgccgccgcccgctcttccc 2259
>ref|XM_475959.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1404 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 445 caccctcattgccggcctat 464 |||||||||||||||||||| Sbjct: 441 caccctcattgccggcctat 460
>ref|XM_469762.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1051 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 121 agctccaccccgccgccgcc 140 |||||||||||||||||||| Sbjct: 187 agctccaccccgccgccgcc 168
>ref|XM_469760.1| Oryza sativa (japonica cultivar-group), mRNA Length = 575 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 121 agctccaccccgccgccgcc 140 |||||||||||||||||||| Sbjct: 164 agctccaccccgccgccgcc 145
>gb|AY599248.1| Homo sapiens downstream of tyrosine kinase 6 (DOK6) mRNA, complete cds Length = 1965 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 131 cgccgccgcccgctcttccc 150 |||||||||||||||||||| Sbjct: 82 cgccgccgcccgctcttccc 63
>ref|NM_152721.2| Homo sapiens docking protein 6 (DOK6), mRNA Length = 1965 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 131 cgccgccgcccgctcttccc 150 |||||||||||||||||||| Sbjct: 82 cgccgccgcccgctcttccc 63
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 121 agctccaccccgccgccgcc 140 |||||||||||||||||||| Sbjct: 30607795 agctccaccccgccgccgcc 30607776
>gb|CP000352.1| Ralstonia metallidurans CH34, complete genome Length = 3928089 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 301 gcggcgtcgcggaccatgcc 320 |||||||||||||||||||| Sbjct: 3163038 gcggcgtcgcggaccatgcc 3163019 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 155 cgctgccgccctgctgctcc 174 |||||||||||||||||||| Sbjct: 1854008 cgctgccgccctgctgctcc 1853989
>gb|AC145433.2| Pan troglodytes BAC clone RP43-43I4 from 7, complete sequence Length = 179409 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 402 gtggatcttccttatctttt 421 |||||||||||||||||||| Sbjct: 81108 gtggatcttccttatctttt 81127
>gb|AC092556.8| Oryza sativa chromosome 3 BAC OSJNBa0047E24 genomic sequence, complete sequence Length = 157970 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 121 agctccaccccgccgccgcc 140 |||||||||||||||||||| Sbjct: 154597 agctccaccccgccgccgcc 154616
>ref|XM_542808.2| PREDICTED: Canis familiaris similar to forkhead box L2 (LOC485688), mRNA Length = 1749 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 123 ctccaccccgccgccgcccg 142 |||||||||||||||||||| Sbjct: 479 ctccaccccgccgccgcccg 498
>gb|AC093131.2| Papio anubis clone RP41-51G4, complete sequence Length = 181049 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 122 gctccaccccgccgccgccc 141 |||||||||||||||||||| Sbjct: 124236 gctccaccccgccgccgccc 124217
>gb|AC125347.2| Mus musculus BAC clone RP24-136B2 from 5, complete sequence Length = 130354 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 404 ggatcttccttatcttttat 423 |||||||||||||||||||| Sbjct: 88027 ggatcttccttatcttttat 88008
>gb|AC112663.9| Mus musculus chromosome 5, clone RP23-465J5, complete sequence Length = 228717 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 404 ggatcttccttatcttttat 423 |||||||||||||||||||| Sbjct: 18590 ggatcttccttatcttttat 18571
>gb|AC142317.1| Pan troglodytes BAC clone RP43-52L16 from 7, complete sequence Length = 147345 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 402 gtggatcttccttatctttt 421 |||||||||||||||||||| Sbjct: 104699 gtggatcttccttatctttt 104680
>emb|BX572594.1| Rhodopseudomonas palustris CGA009 complete genome; segment 2/16 Length = 348971 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 270 gcgcgggcgacgacggcgac 289 |||||||||||||||||||| Sbjct: 328180 gcgcgggcgacgacggcgac 328161
>gb|BC096744.1| Homo sapiens docking protein 6, mRNA (cDNA clone MGC:104528 IMAGE:5260167), complete cds Length = 1960 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 131 cgccgccgcccgctcttccc 150 |||||||||||||||||||| Sbjct: 77 cgccgccgcccgctcttccc 58
>gb|CP000133.1| Rhizobium etli CFN 42, complete genome Length = 4381608 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 277 cgacgacggcgacatggtcg 296 |||||||||||||||||||| Sbjct: 1577727 cgacgacggcgacatggtcg 1577708
>gb|AC091811.7| Oryza sativa chromosome 3 BAC OSJNBa0069E14 genomic sequence, complete sequence Length = 139872 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 121 agctccaccccgccgccgcc 140 |||||||||||||||||||| Sbjct: 139368 agctccaccccgccgccgcc 139349
>gb|AC026585.9| Homo sapiens, clone RP11-17E3, complete sequence Length = 172798 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 131 cgccgccgcccgctcttccc 150 |||||||||||||||||||| Sbjct: 121470 cgccgccgcccgctcttccc 121451
>gb|BC109666.1| Bos taurus cDNA clone MGC:134257 IMAGE:8053628, complete cds Length = 1195 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 132 gccgccgcccgctcttccca 151 |||||||||||||||||||| Sbjct: 109 gccgccgcccgctcttccca 128
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 445 caccctcattgccggcctat 464 |||||||||||||||||||| Sbjct: 28841470 caccctcattgccggcctat 28841451
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 121 agctccaccccgccgccgcc 140 |||||||||||||||||||| Sbjct: 30699217 agctccaccccgccgccgcc 30699198
>gb|AC095043.3| Homo sapiens BAC clone RP11-124A7 from 4, complete sequence Length = 178037 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 54 ctcaggcgtctcctcctctc 73 |||||||||||||||||||| Sbjct: 35643 ctcaggcgtctcctcctctc 35662
>gb|AC010002.6|AC010002 Homo sapiens chromosome 7 clone RP11-194N22, complete sequence Length = 169921 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 402 gtggatcttccttatctttt 421 |||||||||||||||||||| Sbjct: 121840 gtggatcttccttatctttt 121821
>gb|AC084475.1|CBRG01C7 Caenorhabditis briggsae cosmid G01C7, complete sequence Length = 39419 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 141 cgctcttcccagcgcgctgc 160 |||||||||||||||||||| Sbjct: 29451 cgctcttcccagcgcgctgc 29432
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 252 ccgcgcgacggtggtccagcgcgg 275 |||||||||||| ||||||||||| Sbjct: 4844087 ccgcgcgacggtcgtccagcgcgg 4844064
>emb|BX004794.14| Zebrafish DNA sequence from clone DKEYP-79B10 in linkage group 12, complete sequence Length = 207058 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 419 tttattgtaatgggcttggt 438 |||||||||||||||||||| Sbjct: 27927 tttattgtaatgggcttggt 27946
>dbj|AK061252.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-211-G03, full insert sequence Length = 1051 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 121 agctccaccccgccgccgcc 140 |||||||||||||||||||| Sbjct: 187 agctccaccccgccgccgcc 168
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 229 cggcggcaccattggcggca 248 |||||||||||||||||||| Sbjct: 3581482 cggcggcaccattggcggca 3581501
>gb|AY609437.1| Sus scrofa clone Clu_115249.scr.msk.p1.Contig1, mRNA sequence Length = 1552 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 132 gccgccgcccgctcttccca 151 |||||||||||||||||||| Sbjct: 192 gccgccgcccgctcttccca 211
>gb|AC134929.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0035N21, complete sequence Length = 128331 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 445 caccctcattgccggcctat 464 |||||||||||||||||||| Sbjct: 31998 caccctcattgccggcctat 32017 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,513,712 Number of Sequences: 3902068 Number of extensions: 5513712 Number of successful extensions: 109796 Number of sequences better than 10.0: 69 Number of HSP's better than 10.0 without gapping: 69 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 108548 Number of HSP's gapped (non-prelim): 1248 length of query: 578 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 555 effective length of database: 17,143,297,704 effective search space: 9514530225720 effective search space used: 9514530225720 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
