ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart54c06 |
|---|---|
| Clone Library Name | barley_pub |
>COL5_ARATH (Q9FHH8) Zinc finger protein CONSTANS-LIKE 5| Length = 355 Score = 67.0 bits (162), Expect = 3e-11 Identities = 41/118 (34%), Positives = 47/118 (39%), Gaps = 1/118 (0%) Frame = +2 Query: 128 WGVXXXXXXXXXXSPAAVHCRTCXXXXXXXXXAYLCAGCDAG-HARAGHERVWVCEVCEL 304 WG AAV CR A+LC CD H+ HERVWVCEVCE Sbjct: 15 WGAAARSCDACKSVTAAVFCRV--------DSAFLCIACDTRIHSFTRHERVWVCEVCEQ 66 Query: 305 XXXXXXXXXXXXXXXXXXXXXIHHANPLARRHERVPVLPIGSSSPEGQGQDAFVMSFG 478 IH ANPLA RHERVPV S+ + + +FG Sbjct: 67 APAAVTCKADAAALCVSCDADIHSANPLASRHERVPVETFFDSAETAVAKISASSTFG 124
>COL4_ARATH (Q940T9) Zinc finger protein CONSTANS-LIKE 4| Length = 362 Score = 62.0 bits (149), Expect = 1e-09 Identities = 36/92 (39%), Positives = 41/92 (44%), Gaps = 5/92 (5%) Frame = +2 Query: 173 AAVHCRTCXXXXXXXXXAYLCAGCD-----AGHARAGHERVWVCEVCELXXXXXXXXXXX 337 AA++CR A+LC CD A + H RVW+CEVCE Sbjct: 14 AALYCRP--------DAAFLCLSCDSKVHAANKLASRHARVWMCEVCEQAPAHVTCKADA 65 Query: 338 XXXXXXXXXXIHHANPLARRHERVPVLPIGSS 433 IH ANPLARRHERVPV P S Sbjct: 66 AALCVTCDRDIHSANPLARRHERVPVTPFYDS 97
>COL1_ARATH (O50055) Zinc finger protein CONSTANS-LIKE 1| Length = 355 Score = 61.6 bits (148), Expect = 1e-09 Identities = 37/93 (39%), Positives = 42/93 (45%), Gaps = 9/93 (9%) Frame = +2 Query: 185 CRTCXXXXXX----XXXAYLCAGCDAG-HAR----AGHERVWVCEVCELXXXXXXXXXXX 337 C TC AYLC+ CDA HA + HERV VC+ CE Sbjct: 12 CDTCRSAACTVYCRADSAYLCSSCDAQVHAANRLASRHERVRVCQSCERAPAAFFCKADA 71 Query: 338 XXXXXXXXXXIHHANPLARRHERVPVLPIGSSS 436 IH ANPLARRH+RVP+LPI S Sbjct: 72 ASLCTTCDSEIHSANPLARRHQRVPILPISEYS 104
>COL2_ARATH (Q96502) Zinc finger protein CONSTANS-LIKE 2| Length = 347 Score = 61.6 bits (148), Expect = 1e-09 Identities = 34/93 (36%), Positives = 41/93 (44%), Gaps = 9/93 (9%) Frame = +2 Query: 185 CRTCXXXXXX----XXXAYLCAGCDA-----GHARAGHERVWVCEVCELXXXXXXXXXXX 337 C TC AYLC CDA + HERV VC+ CE Sbjct: 16 CDTCRSAACTVYCEADSAYLCTTCDARVHAANRVASRHERVRVCQSCESAPAAFLCKADA 75 Query: 338 XXXXXXXXXXIHHANPLARRHERVPVLPIGSSS 436 IH ANPLARRH+RVP+LP+ ++S Sbjct: 76 ASLCTACDAEIHSANPLARRHQRVPILPLSANS 108
>CONS_ARATH (Q39057) Zinc finger protein CONSTANS| Length = 373 Score = 60.8 bits (146), Expect = 2e-09 Identities = 34/93 (36%), Positives = 40/93 (43%), Gaps = 9/93 (9%) Frame = +2 Query: 185 CRTCXXXXXX----XXXAYLCAGCDA-----GHARAGHERVWVCEVCELXXXXXXXXXXX 337 C TC AYLC CDA + H+RV VCE CE Sbjct: 20 CDTCRSNACTVYCHADSAYLCMSCDAQVHSANRVASRHKRVRVCESCERAPAAFLCEADD 79 Query: 338 XXXXXXXXXXIHHANPLARRHERVPVLPIGSSS 436 +H ANPLARRH+RVP+LPI +S Sbjct: 80 ASLCTACDSEVHSANPLARRHQRVPILPISGNS 112
>COL3_ARATH (Q9SK53) Zinc finger protein CONSTANS-LIKE 3| Length = 294 Score = 60.8 bits (146), Expect = 2e-09 Identities = 30/71 (42%), Positives = 35/71 (49%), Gaps = 5/71 (7%) Frame = +2 Query: 224 AYLCAGCD-----AGHARAGHERVWVCEVCELXXXXXXXXXXXXXXXXXXXXXIHHANPL 388 A+LC CD A + HERVW+CEVCE IH ANPL Sbjct: 25 AFLCGDCDGKIHTANKLASRHERVWLCEVCEQAPAHVTCKADAAALCVTCDRDIHSANPL 84 Query: 389 ARRHERVPVLP 421 +RRHERVP+ P Sbjct: 85 SRRHERVPITP 95
>STHY_ARATH (Q9SYM2) Putative salt tolerance-like protein At1g78600| Length = 299 Score = 31.6 bits (70), Expect = 1.5 Identities = 17/52 (32%), Positives = 21/52 (40%) Frame = +2 Query: 287 CEVCELXXXXXXXXXXXXXXXXXXXXXIHHANPLARRHERVPVLPIGSSSPE 442 C VCE IH AN LA +H+RVP+ SS P+ Sbjct: 5 CNVCEAAEATVLCCADEAALCWACDEKIHAANKLAGKHQRVPLSASASSIPK 56
>YPX2_BLVJ (P03413) Hypothetical PXBL-II protein (Fragment)| Length = 148 Score = 31.6 bits (70), Expect = 1.5 Identities = 13/29 (44%), Positives = 17/29 (58%) Frame = -1 Query: 498 FSPSTEPPNDITNASCPCPSGDEDPMGST 412 F PS+ PP+ TNA+CP P P+ T Sbjct: 113 FPPSSGPPSSPTNANCPRPLATVAPLSGT 141
>BSN_RAT (O88778) Bassoon protein| Length = 3937 Score = 31.2 bits (69), Expect = 1.9 Identities = 36/132 (27%), Positives = 46/132 (34%), Gaps = 10/132 (7%) Frame = -1 Query: 531 RASFRFTTASCFSPSTEPPNDITNASCPCPSGDEDPMGSTGTRS*RRAS--GLAWWMXXX 358 RA+ F+T + PS P +DI P G PM + GT++ R S L W Sbjct: 1491 RATAEFSTQT---PSLTPSSDI-----PRSVGTPSPMVAQGTQTPHRPSTPRLVWQQSSQ 1542 Query: 357 XXXXXXXXXXXXXXXXXXSSHTS-QTHTLSCPARACPASH-------PAHRYAPSPPPLR 202 H S T L P + PASH P+ PS P Sbjct: 1543 EAPVMVITLASDASSQTRMVHASASTSPLCSPTDSQPASHSYSQTTPPSASQMPSEPAGP 1602 Query: 201 PSHVRQCTAAGD 166 P R +A D Sbjct: 1603 PGFPRAPSAGVD 1614
>COL6_ARATH (Q8LG76) Zinc finger protein CONSTANS-LIKE 6| Length = 406 Score = 30.4 bits (67), Expect = 3.3 Identities = 12/14 (85%), Positives = 13/14 (92%) Frame = +2 Query: 368 IHHANPLARRHERV 409 +H ANPLARRHERV Sbjct: 44 VHSANPLARRHERV 57
>COL16_ARATH (Q8RWD0) Zinc finger protein CONSTANS-LIKE 16| Length = 417 Score = 30.4 bits (67), Expect = 3.3 Identities = 12/14 (85%), Positives = 13/14 (92%) Frame = +2 Query: 368 IHHANPLARRHERV 409 +H ANPLARRHERV Sbjct: 44 VHSANPLARRHERV 57
>BSN_MOUSE (O88737) Bassoon protein| Length = 3941 Score = 29.3 bits (64), Expect = 7.4 Identities = 29/118 (24%), Positives = 39/118 (33%), Gaps = 10/118 (8%) Frame = -1 Query: 489 STEPPNDITNASCPCPSGDEDPMGSTGTRS*RRAS--GLAWWMXXXXXXXXXXXXXXXXX 316 ST+ P+ ++ P G PM + GT++ R S L W Sbjct: 1509 STQTPSLTLSSDIPRSPGPPSPMVAQGTQTPHRPSTPRLVWQQSSQEAPIMVITLASDAS 1568 Query: 315 XXXXSSHTS-QTHTLSCPARACPASH-------PAHRYAPSPPPLRPSHVRQCTAAGD 166 H S T L P + P SH P+ PS P P R +A D Sbjct: 1569 SQTRMVHASASTSPLCSPTDSQPTSHSYSQTTPPSASQMPSEPAGPPGFPRAPSAGTD 1626
>NEB2_HUMAN (Q96SB3) Neurabin-2 (Neurabin-II) (Spinophilin) (Protein| phosphatase 1 regulatory subunit 9B) Length = 815 Score = 29.3 bits (64), Expect = 7.4 Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 2/26 (7%) Frame = -1 Query: 255 CPASH--PAHRYAPSPPPLRPSHVRQ 184 CPA P HR AP+ PP +P VR+ Sbjct: 270 CPAGQQPPQHRVAPARPPPKPREVRK 295
>VP40_BHV1C (P54817) Capsid protein P40 [Contains: Assemblin (Protease) (EC| 3.4.21.97); Capsid assembly protein] Length = 621 Score = 29.3 bits (64), Expect = 7.4 Identities = 11/25 (44%), Positives = 13/25 (52%) Frame = -1 Query: 267 PARACPASHPAHRYAPSPPPLRPSH 193 P PA P H ++P PP PSH Sbjct: 463 PGEGAPAELPPHHHSPPPPHPPPSH 487
>CYAA_NEUCR (Q01631) Adenylate cyclase (EC 4.6.1.1) (ATP pyrophosphate-lyase)| (Adenylyl cyclase) Length = 2300 Score = 29.3 bits (64), Expect = 7.4 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 5/36 (13%) Frame = -1 Query: 261 RACPASHPAHRYAPSPP-----PLRPSHVRQCTAAG 169 RA +++PA Y P P+RP +VRQ TA G Sbjct: 593 RAAESTYPASVYVSDPSEQREVPVRPGYVRQTTAPG 628
>FYB_MOUSE (O35601) FYN-binding protein (FYN-T-binding protein) (FYB-120/130)| (p120/p130) (SLP-76-associated phosphoprotein) (SLAP-130) Length = 819 Score = 28.9 bits (63), Expect = 9.6 Identities = 15/26 (57%), Positives = 15/26 (57%) Frame = -1 Query: 285 THTLSCPARACPASHPAHRYAPSPPP 208 TH S P PASHPAH PS PP Sbjct: 386 THPASQPP--LPASHPAHPPVPSLPP 409
>RNC_HUMAN (Q9NRR4) Ribonuclease III (EC 3.1.26.3) (RNase III) (Drosha) (p241)| Length = 1374 Score = 28.9 bits (63), Expect = 9.6 Identities = 11/27 (40%), Positives = 13/27 (48%) Frame = -1 Query: 267 PARACPASHPAHRYAPSPPPLRPSHVR 187 P R CP H PS P RP ++R Sbjct: 14 PGRGCPRGRGGHGARPSAPSFRPQNLR 40 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 40,714,017 Number of Sequences: 219361 Number of extensions: 627876 Number of successful extensions: 3023 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 2737 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2998 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4258037034 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
