ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart54c04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CO410_WHEAT (P46524) Dehydrin COR410 (Cold-induced COR410 protein) 128 9e-30
2PCLO_RAT (Q9JKS6) Protein piccolo (Aczonin) (Multidomain presyna... 32 0.83
3DIAP2_MOUSE (O70566) Protein diaphanous homolog 2 (Diaphanous-re... 31 1.9
4DIAP1_HUMAN (O60610) Protein diaphanous homolog 1 (Diaphanous-re... 30 3.2
5APG_ARATH (P40602) Anter-specific proline-rich protein APG precu... 29 9.2

>CO410_WHEAT (P46524) Dehydrin COR410 (Cold-induced COR410 protein)|
          Length = 262

 Score =  128 bits (322), Expect = 9e-30
 Identities = 84/174 (48%), Positives = 86/174 (49%), Gaps = 8/174 (4%)
 Frame = +1

Query: 31  MEDERSTQSYQGAEA-DQVEVTDRXXXXXXXXXXXXXXXXXXXXXXVTGMXXXXXXX--- 198
           MEDERSTQSYQG EA +QVEVTDR                      VTGM          
Sbjct: 1   MEDERSTQSYQGGEAAEQVEVTDRGLLGNLLGKKKAEEDKEKEEELVTGMEKVSVEEPEV 60

Query: 199 -XXXXXDGEKKETLFSKLHRXXXXXXXXXXXXXXXXVIDENXXXXXXXXXXXXXXXXXXX 375
                 DGEKKETLFSKLHR                VID+N                   
Sbjct: 61  KKEEHEDGEKKETLFSKLHRSSSSSSSSSDEEEEE-VIDDNGEVIKRKKKKGLKEKLQGK 119

Query: 376 XXXXXDNEAEHVTGLPAPMAPASVQTH---HDTDVVVEKIDGDAKTEATPAVPE 528
                D E EHVTGLPAP APASVQTH   HDTDVVVEKIDGD KTEA PAVPE
Sbjct: 120 LPGHKDTEGEHVTGLPAPAAPASVQTHGGHHDTDVVVEKIDGDVKTEAAPAVPE 173



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>PCLO_RAT (Q9JKS6) Protein piccolo (Aczonin) (Multidomain presynaptic|
            cytomatrix protein)
          Length = 5085

 Score = 32.3 bits (72), Expect = 0.83
 Identities = 16/37 (43%), Positives = 22/37 (59%)
 Frame = +1

Query: 418  LPAPMAPASVQTHHDTDVVVEKIDGDAKTEATPAVPE 528
            +PAP  P+S +T   T V  +K + + KTEA   VPE
Sbjct: 1088 MPAPAEPSSQKTPTGTQVKGKKKEAEGKTEAEKPVPE 1124



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>DIAP2_MOUSE (O70566) Protein diaphanous homolog 2 (Diaphanous-related formin-2)|
           (DRF2) (mDia3)
          Length = 1098

 Score = 31.2 bits (69), Expect = 1.9
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = -2

Query: 103 GPCPSPPPDRPQLPGMTGCSSHPP 32
           GPCP PPP  P  P + G    PP
Sbjct: 556 GPCPPPPPPPPPPPPLPGVVPPPP 579



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>DIAP1_HUMAN (O60610) Protein diaphanous homolog 1 (Diaphanous-related formin-1)|
           (DRF1)
          Length = 1248

 Score = 30.4 bits (67), Expect = 3.2
 Identities = 13/23 (56%), Positives = 13/23 (56%)
 Frame = -2

Query: 100 PCPSPPPDRPQLPGMTGCSSHPP 32
           P P PPP  P LPG T  S  PP
Sbjct: 601 PPPPPPPPPPPLPGGTAISPPPP 623



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>APG_ARATH (P40602) Anter-specific proline-rich protein APG precursor|
          Length = 534

 Score = 28.9 bits (63), Expect = 9.2
 Identities = 13/27 (48%), Positives = 14/27 (51%), Gaps = 4/27 (14%)
 Frame = -2

Query: 100 PCPSPPPD----RPQLPGMTGCSSHPP 32
           PCPSPPP      P  P  + C S PP
Sbjct: 87  PCPSPPPKPQPKPPPAPSPSPCPSPPP 113


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.313    0.130    0.363 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,167,391
Number of Sequences: 219361
Number of extensions: 456105
Number of successful extensions: 2271
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1780
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2222
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4085413911
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
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