Clone Name | bart54c01 |
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Clone Library Name | barley_pub |
>VDAC_MAIZE (P42057) Outer plastidial membrane protein porin (Voltage-dependent| anion-selective channel protein) (VDAC) Length = 277 Score = 108 bits (269), Expect = 1e-23 Identities = 57/130 (43%), Positives = 70/130 (53%) Frame = +3 Query: 153 LYADIGKKARDLLNRDYXXXXXXXXXXXXXXXXXXXXXXXKKNEAILSDLQTQVKIKNFT 332 LY DIGKK RDLL +DY +KNE+I +L TQ+K K T Sbjct: 7 LYTDIGKKTRDLLYKDYNTHQKFCLTTSSPNGVAITAAGTRKNESIFGELHTQIKNKKLT 66 Query: 333 VDVKAXXXXXXXXXXXXPELCKPGLKGVLSLPFPYQKSTPGKAELQYLHPHLGINGSVGL 512 VDVKA E PGLK +++L P Q+S GK E QYLH + G+N SVGL Sbjct: 67 VDVKANSESDLLTTITVDEFGTPGLKSIINLVVPDQRS--GKLEFQYLHEYAGVNASVGL 124 Query: 513 NPNPLVNISG 542 N NP+VN+SG Sbjct: 125 NSNPMVNLSG 134
>VDAC1_WHEAT (P46274) Outer mitochondrial membrane protein porin| (Voltage-dependent anion-selective channel protein) (VDAC) Length = 275 Score = 107 bits (268), Expect = 2e-23 Identities = 57/130 (43%), Positives = 71/130 (54%) Frame = +3 Query: 153 LYADIGKKARDLLNRDYXXXXXXXXXXXXXXXXXXXXXXXKKNEAILSDLQTQVKIKNFT 332 LY+ IGKKA+DLL RDY KK + + ++Q+Q+K KN T Sbjct: 6 LYSGIGKKAKDLLYRDYQTDHKFTLTTYTANGPAITATSTKKADLTVGEIQSQIKNKNIT 65 Query: 333 VDVKAXXXXXXXXXXXXPELCKPGLKGVLSLPFPYQKSTPGKAELQYLHPHLGINGSVGL 512 VDVKA +L PGLK +LS P QKS GK ELQYLH + GIN S+GL Sbjct: 66 VDVKANSASNVITTITADDLAAPGLKTILSFAVPDQKS--GKVELQYLHDYAGINASIGL 123 Query: 513 NPNPLVNISG 542 NP+VN+SG Sbjct: 124 TANPVVNLSG 133
>VDAC2_SOLTU (P42056) 36 kDa outer mitochondrial membrane protein porin| (Voltage-dependent anion-selective channel protein) (VDAC) (POM 36) Length = 275 Score = 101 bits (252), Expect = 1e-21 Identities = 59/130 (45%), Positives = 67/130 (51%) Frame = +3 Query: 153 LYADIGKKARDLLNRDYXXXXXXXXXXXXXXXXXXXXXXXKKNEAILSDLQTQVKIKNFT 332 LY+DIGKKARDLL RDY KK E L+D+ TQ+K KN T Sbjct: 6 LYSDIGKKARDLLYRDYVSDHKFTVTTYSTTGVAITASGLKKGELFLADVSTQLKNKNIT 65 Query: 333 VDVKAXXXXXXXXXXXXPELCKPGLKGVLSLPFPYQKSTPGKAELQYLHPHLGINGSVGL 512 DVK E PGLK + S P QKS GK ELQYLH + GIN S+GL Sbjct: 66 TDVKVDTNSNVYTTITVDEPA-PGLKTIFSFVVPDQKS--GKVELQYLHEYAGINTSIGL 122 Query: 513 NPNPLVNISG 542 +PLVN SG Sbjct: 123 TASPLVNFSG 132
>VDAC1_ORYSA (Q6K548) Outer mitochondrial membrane protein porin| (Voltage-dependent anion-selective channel protein) (VDAC) Length = 273 Score = 97.1 bits (240), Expect = 3e-20 Identities = 54/129 (41%), Positives = 69/129 (53%) Frame = +3 Query: 153 LYADIGKKARDLLNRDYXXXXXXXXXXXXXXXXXXXXXXXKKNEAILSDLQTQVKIKNFT 332 LY +IGKKARDLL RDY KK + I ++Q+Q+K KN T Sbjct: 5 LYPEIGKKARDLLYRDYQTDHKFTLTTYTSNGVAITATSTKKADLIFGEIQSQIKNKNIT 64 Query: 333 VDVKAXXXXXXXXXXXXPELCKPGLKGVLSLPFPYQKSTPGKAELQYLHPHLGINGSVGL 512 VDVKA EL PGLK +LS P Q+S GK ELQY H + G++ S+GL Sbjct: 65 VDVKANSDSNVVTTVTVDEL-TPGLKSILSFAVPDQRS--GKFELQYSHDYAGVSASIGL 121 Query: 513 NPNPLVNIS 539 +P+VN+S Sbjct: 122 TASPVVNLS 130
>VDAC_PEA (P42054) Outer plastidial membrane protein porin (Voltage-dependent| anion-selective channel protein) (VDAC) Length = 275 Score = 96.7 bits (239), Expect = 4e-20 Identities = 55/129 (42%), Positives = 64/129 (49%) Frame = +3 Query: 153 LYADIGKKARDLLNRDYXXXXXXXXXXXXXXXXXXXXXXXKKNEAILSDLQTQVKIKNFT 332 LY DIGKKARDLL +DY KK E L D+ TQ+K KN T Sbjct: 6 LYTDIGKKARDLLYKDYHSDKKFTISTYSPTGVAITSSGTKKGELFLGDVNTQLKNKNIT 65 Query: 333 VDVKAXXXXXXXXXXXXPELCKPGLKGVLSLPFPYQKSTPGKAELQYLHPHLGINGSVGL 512 D+K E PG+K +LS P Q T GK ELQYLH + GI+ SVGL Sbjct: 66 TDIKVDTNSNLFTTITVNEPA-PGVKAILSFKVPEQ--TSGKVELQYLHEYAGISSSVGL 122 Query: 513 NPNPLVNIS 539 NP+VN S Sbjct: 123 KANPIVNFS 131
>VDAC1_SOLTU (P42055) 34 kDa outer mitochondrial membrane protein porin| (Voltage-dependent anion-selective channel protein) (VDAC) (POM 34) Length = 275 Score = 93.6 bits (231), Expect = 3e-19 Identities = 54/130 (41%), Positives = 66/130 (50%) Frame = +3 Query: 153 LYADIGKKARDLLNRDYXXXXXXXXXXXXXXXXXXXXXXXKKNEAILSDLQTQVKIKNFT 332 LY +IGKKARDLL +DY KK + L+D+ TQ+K KN T Sbjct: 6 LYTEIGKKARDLLYKDYQSDHKFSITTYSPTGVVITSSGSKKGDLFLADVNTQLKNKNVT 65 Query: 333 VDVKAXXXXXXXXXXXXPELCKPGLKGVLSLPFPYQKSTPGKAELQYLHPHLGINGSVGL 512 D+K E PGLK +LS P Q+S GK E+QYLH + GI SVGL Sbjct: 66 TDIKVDTNSNLFTTITVDE-AAPGLKTILSFRVPDQRS--GKLEVQYLHDYAGICTSVGL 122 Query: 513 NPNPLVNISG 542 NP+VN SG Sbjct: 123 TANPIVNFSG 132
>VDAC2_ARATH (Q9SMX3) Outer mitochondrial membrane protein porin 2| (Voltage-dependent anion-selective channel protein 2) (VDAC 2) Length = 273 Score = 89.0 bits (219), Expect = 8e-18 Identities = 52/130 (40%), Positives = 60/130 (46%) Frame = +3 Query: 153 LYADIGKKARDLLNRDYXXXXXXXXXXXXXXXXXXXXXXXKKNEAILSDLQTQVKIKNFT 332 LY +IGKKARDLL RDY K L D+ TQVK NFT Sbjct: 6 LYTEIGKKARDLLYRDYQGDQKFSVTTYSSTGVAITTTGTNKGSLFLGDVATQVKNNNFT 65 Query: 333 VDVKAXXXXXXXXXXXXPELCKPGLKGVLSLPFPYQKSTPGKAELQYLHPHLGINGSVGL 512 DVK E PGLK ++ P KS GKAE+QY H + GI+ SVG Sbjct: 66 ADVKVSTDSSLLTTLTFDEPA-PGLKVIVQAKLPDHKS--GKAEVQYFHDYAGISTSVGF 122 Query: 513 NPNPLVNISG 542 P+VN SG Sbjct: 123 TATPIVNFSG 132
>VDAC1_ARATH (Q9SRH5) Outer mitochondrial membrane protein porin 1| (Voltage-dependent anion-selective channel protein 1) (VDAC 1) Length = 275 Score = 85.1 bits (209), Expect = 1e-16 Identities = 49/130 (37%), Positives = 62/130 (47%) Frame = +3 Query: 153 LYADIGKKARDLLNRDYXXXXXXXXXXXXXXXXXXXXXXXKKNEAILSDLQTQVKIKNFT 332 LY +IGKKARDLL +D+ KK + +L D+ Q + KN T Sbjct: 6 LYTEIGKKARDLLYKDHNSDQKFSITTFSPAGVAITSTGTKKGDLLLGDVAFQSRRKNIT 65 Query: 333 VDVKAXXXXXXXXXXXXPELCKPGLKGVLSLPFPYQKSTPGKAELQYLHPHLGINGSVGL 512 D+K E PGL+ + S P Q S GK ELQYLH + GI+ S+GL Sbjct: 66 TDLKVCTDSTFLITATVDE-AAPGLRSIFSFKVPDQNS--GKVELQYLHEYAGISTSMGL 122 Query: 513 NPNPLVNISG 542 NP VN SG Sbjct: 123 TQNPTVNFSG 132
>VDAC_DROME (Q94920) Voltage-dependent anion-selective channel (Porin) (DmVDAC)| Length = 281 Score = 34.7 bits (78), Expect = 0.18 Identities = 30/135 (22%), Positives = 54/135 (40%), Gaps = 7/135 (5%) Frame = +3 Query: 156 YADIGKKARDLLNRDYXXXXXXXXXXXXXXXXXXXXXXXKKNE---AILSDLQTQVKIKN 326 Y+D+GK+ARD+ ++ Y N+ + L+T+ K+K+ Sbjct: 5 YSDLGKQARDIFSKGYNFGLWKLDLKTKTSSGIEFNTAGHSNQESGKVFGSLETKYKVKD 64 Query: 327 F--TVDVKAXXXXXXXXXXXXPELCKPGLKGVLSLPF-PYQKSTPGKAELQYLHPHLGIN 497 + T+ K + GLK L F P + GK ++ Y H ++ + Sbjct: 65 YGLTLTEKWNTDNTLFTEVAVQDQLLEGLKLSLEGNFAPQSGNKNGKFKVAYGHENVKAD 124 Query: 498 GSVGLN-PNPLVNIS 539 V ++ PL+N S Sbjct: 125 SDVNIDLKGPLINAS 139
>CAC1H_HUMAN (O95180) Voltage-dependent T-type calcium channel alpha-1H subunit| (Voltage-gated calcium channel alpha subunit Cav3.2) (Low-voltage-activated calcium channel alpha1 3.2 subunit) Length = 2353 Score = 29.6 bits (65), Expect = 5.7 Identities = 18/48 (37%), Positives = 21/48 (43%), Gaps = 2/48 (4%) Frame = +2 Query: 176 GQRSPQQGLHHGPEVHL-YHHRRQRSHNY*FKHKEK*SYLERP-PDPG 313 G R + G H HL YHH H+Y F H RP P+PG Sbjct: 501 GHRQRRAGRHTASVHHLVYHHHHHHHHHYHFSHGSP----RRPGPEPG 544
>SRPK1_HUMAN (Q96SB4) Serine/threonine-protein kinase SRPK1 (EC 2.7.11.1)| (Serine/arginine-rich protein-specific kinase 1) (SR-protein-specific kinase 1) (SFRS protein kinase 1) Length = 826 Score = 28.9 bits (63), Expect = 9.7 Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 2/34 (5%) Frame = +3 Query: 426 PFPYQKSTPGKAELQYLHPHLG--INGSVGLNPN 521 P P Q PG A L LHPHLG ++ + L+P+ Sbjct: 138 PPPRQAPQPGLAPLLGLHPHLGRLLSSTFALHPS 171 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 54,718,522 Number of Sequences: 219361 Number of extensions: 933078 Number of successful extensions: 2540 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 2393 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2502 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4315578075 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)