ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart54a08 |
|---|---|
| Clone Library Name | barley_pub |
>YCF36_PORPU (P51273) Hypothetical 19.2 kDa protein ycf36 (ORF165)| Length = 165 Score = 51.2 bits (121), Expect = 2e-06 Identities = 27/80 (33%), Positives = 46/80 (57%) Frame = +1 Query: 295 VPYEQRPVNEYSALKESTLYSWAELSPGSFFMRLGSLCLVTFTVLAAPISAASFSPGKDP 474 VP EQ+PVNEY++LK S + W LS S+ ++ ++ L+ L +P+ + F K P Sbjct: 10 VPLEQQPVNEYNSLKNSWFFCWPTLSSHSYNKKI-TITLIATCFLVSPVLLSIFPIAKLP 68 Query: 475 LKFVLAAGIGTLLLVSLVVL 534 LKF + I + L+ +++ Sbjct: 69 LKFFFSEFIISSLITCFILI 88
>YCF36_CYAPA (P48276) Hypothetical 18.6 kDa protein ycf36| Length = 159 Score = 33.5 bits (75), Expect = 0.38 Identities = 14/42 (33%), Positives = 23/42 (54%) Frame = +1 Query: 295 VPYEQRPVNEYSALKESTLYSWAELSPGSFFMRLGSLCLVTF 420 +P EQ+P+NEY L S L++W +F L ++ + F Sbjct: 7 IPTEQQPLNEYQILNNSVLFNWPSQKLKIYFFYLFTIYSIGF 48
>BFR2_NEUCR (Q7S6P8) Protein bfr-2| Length = 636 Score = 32.7 bits (73), Expect = 0.66 Identities = 24/70 (34%), Positives = 34/70 (48%) Frame = +3 Query: 243 KPLRRGRPELGPQDGDRSPIRAKTG*RVLRSQGEHLVFVGRAQSRLLLHAPRQPVPGHIY 422 KP + PE P+DGD ++ V R++ EH V VG+++ L P G Y Sbjct: 20 KPAKDYDPEAEPRDGDDDQSGSEADSDVERAETEHYVTVGKSK----LRKAEAPTLGPEY 75 Query: 423 SSGGPNLSRK 452 S G +SRK Sbjct: 76 S--GTRVSRK 83
>DKGA_CORSC (P06632) 2,5-diketo-D-gluconic acid reductase A (EC 1.1.1.274)| (2,5-DKG reductase A) (2,5-DKGR A) (25DKGR-A) (AKR5C) Length = 277 Score = 32.3 bits (72), Expect = 0.86 Identities = 18/70 (25%), Positives = 35/70 (50%) Frame = +1 Query: 280 RMEIGVPYEQRPVNEYSALKESTLYSWAELSPGSFFMRLGSLCLVTFTVLAAPISAASFS 459 ++E+ Y+QR + +++A + + SW L G + + A P++AA+ + Sbjct: 160 QIELHPAYQQREITDWAAAHDVKIESWGPLGQGKYDL-----------FGAEPVTAAAAA 208 Query: 460 PGKDPLKFVL 489 GK P + VL Sbjct: 209 HGKTPAQAVL 218
>LEXA_AZOSE (Q5P4A1) LexA repressor (EC 3.4.21.88)| Length = 203 Score = 32.0 bits (71), Expect = 1.1 Identities = 22/62 (35%), Positives = 35/62 (56%) Frame = +3 Query: 261 RPELGPQDGDRSPIRAKTG*RVLRSQGEHLVFVGRAQSRLLLHAPRQPVPGHIYSSGGPN 440 R E+ G RSP A+T R L ++G ++ GRA+ L+ A P+ GH+ ++G P Sbjct: 32 RAEICTAFGFRSPNAAETHLRTLAAKGAIVLEEGRARGIRLVEALGLPLVGHV-AAGRPM 90 Query: 441 LS 446 L+ Sbjct: 91 LA 92
>YHYC_PSESN (Q01266) Hypothetical protein in hyuC 3'region (ORF 5) (Fragment)| Length = 245 Score = 30.0 bits (66), Expect = 4.3 Identities = 13/36 (36%), Positives = 21/36 (58%) Frame = +1 Query: 427 LAAPISAASFSPGKDPLKFVLAAGIGTLLLVSLVVL 534 L PI+AA P PL+ ++A +G L++ L+ L Sbjct: 26 LVTPITAAQLYPALSPLQIIIACILGNLIVAILLTL 61
>DDLA_PSEAE (Q9HWI0) D-alanine--D-alanine ligase A (EC 6.3.2.4)| (D-alanylalanine synthetase A) (D-Ala-D-Ala ligase A) Length = 346 Score = 30.0 bits (66), Expect = 4.3 Identities = 28/100 (28%), Positives = 44/100 (44%), Gaps = 11/100 (11%) Frame = +1 Query: 109 HGGTASPRQFAGAFPQGGRASTRTKRLRGVAVAMALKEEEPESSRSRFAGGGL---SW-- 273 HGGT GG A T + L A AMA+ + + ++ F G+ SW Sbjct: 100 HGGTGEDGTLQALLDAGGFAYTGSGHL---ASAMAM---DKDVAKRLFLAAGVETASWLM 153 Query: 274 ------DPRMEIGVPYEQRPVNEYSALKESTLYSWAELSP 375 + R ++G P +P ++ S + S ++S AEL P Sbjct: 154 APASEEEVREQLGFPLVVKPNSQGSTVGLSIVHSQAELQP 193
>PO3F1_HUMAN (Q03052) POU domain, class 3, transcription factor 1| (Octamer-binding transcription factor 6) (Oct-6) (POU-domain transcription factor SCIP) Length = 448 Score = 30.0 bits (66), Expect = 4.3 Identities = 17/46 (36%), Positives = 21/46 (45%) Frame = -1 Query: 449 AAEIGAARTVNVTRHRLPRRMKKEPGLSSAHEYKVLSLRAEYSLTG 312 AA GAA T H L M PG S H+ + L L A+ + G Sbjct: 118 AAHAGAAWAQGSTAHHLGPAMSPSPGASGGHQPQPLGLYAQAAYPG 163
>LEU3_DESVH (Q726X1) 3-isopropylmalate dehydrogenase (EC 1.1.1.85) (Beta-IPM| dehydrogenase) (IMDH) (3-IPM-DH) Length = 357 Score = 30.0 bits (66), Expect = 4.3 Identities = 24/85 (28%), Positives = 36/85 (42%) Frame = +1 Query: 253 AGGGLSWDPRMEIGVPYEQRPVNEYSALKESTLYSWAELSPGSFFMRLGSLCLVTFTVLA 432 A GG WD +P E+RP ++++ L +A L P + F L CL+ + A Sbjct: 73 AVGGPKWDD-----LPSEKRPEKGLLGIRKA-LGLFANLRPAALFPELAGACLLRADIAA 126 Query: 433 APISAASFSPGKDPLKFVLAAGIGT 507 A + + F AGI T Sbjct: 127 AGLDLVVVRELTGDVYFGQPAGIET 151
>OPGD_SHIFL (Q83R85) Glucans biosynthesis protein D precursor| Length = 551 Score = 29.6 bits (65), Expect = 5.6 Identities = 18/49 (36%), Positives = 21/49 (42%), Gaps = 4/49 (8%) Frame = -3 Query: 192 PQPLCPRGRSAALRKGSGELPRGCCPAMVVPKKQRHRLD----GGNLQA 58 P CP R A R G G P G P P+K R GG+L+A Sbjct: 418 PPVHCPLARVMATRTGMGGFPEGWAPGEHYPEKWARRFAVDFVGGDLKA 466
>OPGD_ECOL6 (Q8CW34) Glucans biosynthesis protein D precursor| Length = 551 Score = 29.6 bits (65), Expect = 5.6 Identities = 18/49 (36%), Positives = 21/49 (42%), Gaps = 4/49 (8%) Frame = -3 Query: 192 PQPLCPRGRSAALRKGSGELPRGCCPAMVVPKKQRHRLD----GGNLQA 58 P CP R A R G G P G P P+K R GG+L+A Sbjct: 418 PPVHCPLARVMATRTGMGGFPEGWAPGEHYPEKWARRFAVDFVGGDLKA 466
>OPGD_ECO57 (Q8X9V1) Glucans biosynthesis protein D precursor| Length = 551 Score = 29.6 bits (65), Expect = 5.6 Identities = 18/49 (36%), Positives = 21/49 (42%), Gaps = 4/49 (8%) Frame = -3 Query: 192 PQPLCPRGRSAALRKGSGELPRGCCPAMVVPKKQRHRLD----GGNLQA 58 P CP R A R G G P G P P+K R GG+L+A Sbjct: 418 PPVHCPLARVMATRTGMGGFPEGWAPGEHYPEKWARRFAVDFVGGDLKA 466
>CWC24_CRYNE (Q5KB05) Pre-mRNA-splicing factor CWC24| Length = 329 Score = 29.6 bits (65), Expect = 5.6 Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 6/55 (10%) Frame = -1 Query: 425 TVNVTRHRLPRRMKKEPGLSSAHEYKVL------SLRAEYSLTGLCSYGTPISIL 279 T+N TR L ++MK P +++H + + +Y TG C YG L Sbjct: 147 TINKTRETLDKKMKSGPIKATSHVRTITLMDYQPDVCKDYKETGFCGYGDSCKFL 201
>VP7_AHSV9 (Q86729) VP7 core protein (VP7 antigen) (Capsid protein VP7)| Length = 349 Score = 28.9 bits (63), Expect = 9.5 Identities = 16/53 (30%), Positives = 23/53 (43%) Frame = -1 Query: 173 VDALPPCGKAPANCRGDAVPPWSCPRSSATGWTVVIFRRSNMEKLTPIIF*PT 15 +D +P C P W R+ VIF++ NM+ + P IF PT Sbjct: 257 LDTVPELAPTLTRCYAYVSPTWHALRA-------VIFQQMNMQPINPPIFPPT 302
>VP7_AHSV6 (O71027) VP7 core protein (VP7 antigen) (Capsid protein VP7)| Length = 349 Score = 28.9 bits (63), Expect = 9.5 Identities = 16/53 (30%), Positives = 23/53 (43%) Frame = -1 Query: 173 VDALPPCGKAPANCRGDAVPPWSCPRSSATGWTVVIFRRSNMEKLTPIIF*PT 15 +D +P C P W R+ VIF++ NM+ + P IF PT Sbjct: 257 LDTVPELAPTLTRCYAYVSPTWHALRA-------VIFQQMNMQPINPPIFPPT 302
>VP7_AHSV4 (P36325) VP7 core protein (VP7 antigen) (Capsid protein VP7)| Length = 350 Score = 28.9 bits (63), Expect = 9.5 Identities = 16/53 (30%), Positives = 23/53 (43%) Frame = -1 Query: 173 VDALPPCGKAPANCRGDAVPPWSCPRSSATGWTVVIFRRSNMEKLTPIIF*PT 15 +D +P C P W R+ VIF++ NM+ + P IF PT Sbjct: 257 LDTVPELAPTLTRCYAYVSPTWHALRA-------VIFQQMNMQPINPPIFPPT 302 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 75,283,957 Number of Sequences: 219361 Number of extensions: 1508044 Number of successful extensions: 5464 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 5293 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5464 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4200495993 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
