ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart54a08 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_468862.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1135 Score = 194 bits (98), Expect = 2e-46 Identities = 248/298 (83%) Strand = Plus / Plus Query: 221 aggaggagccggagagcagccgaagccgcttcgccgggggcggcctgagctgggacccca 280 ||||||||||||| ||||||| ||| |||||||||| |||| | ||||||||||||| Sbjct: 183 aggaggagccggaaggcagccgtagcggcttcgccggcggcgttccgagctgggaccccg 242 Query: 281 ggatggagatcggagtcccatacgagcaaagaccggttaacgagtactccgctctcaagg 340 || |||||||| |||||| | ||||||||||||||| |||||||||||||| ||||||| Sbjct: 243 ggctggagatccaagtccctttcgagcaaagaccggtgaacgagtactccgccctcaagg 302 Query: 341 agagcaccttgtattcgtgggcagagctcagtccaggctccttcttcatgcgcctaggca 400 | ||| | || |||||||||||||| || || || || |||||| |||||||||||| Sbjct: 303 atagcgtactctactcgtgggcagagctgagcccggggtcattcttcctgcgcctaggca 362 Query: 401 gcctgtgcctggtcacatttacagttctggcggccccaatctcagccgcaagtttcagtc 460 ||||||| ||| |||| || || || || || || || || |||| ||||||||||||| Sbjct: 363 gcctgtggctgatcaccttcacggtgctcgccgcgcccattgcagctgcaagtttcagtc 422 Query: 461 ccggaaaggatccgctcaagtttgtgctggctgctgggattgggaccctgctcctcgt 518 | ||||||||||| ||||| || ||||| || ||||||||||| || ||||||||||| Sbjct: 423 caggaaaggatccactcaaattcgtgctagcagctgggattggaactctgctcctcgt 480
>dbj|AK065720.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013041G12, full insert sequence Length = 1196 Score = 194 bits (98), Expect = 2e-46 Identities = 248/298 (83%) Strand = Plus / Plus Query: 221 aggaggagccggagagcagccgaagccgcttcgccgggggcggcctgagctgggacccca 280 ||||||||||||| ||||||| ||| |||||||||| |||| | ||||||||||||| Sbjct: 232 aggaggagccggaaggcagccgtagcggcttcgccggcggcgttccgagctgggaccccg 291 Query: 281 ggatggagatcggagtcccatacgagcaaagaccggttaacgagtactccgctctcaagg 340 || |||||||| |||||| | ||||||||||||||| |||||||||||||| ||||||| Sbjct: 292 ggctggagatccaagtccctttcgagcaaagaccggtgaacgagtactccgccctcaagg 351 Query: 341 agagcaccttgtattcgtgggcagagctcagtccaggctccttcttcatgcgcctaggca 400 | ||| | || |||||||||||||| || || || || |||||| |||||||||||| Sbjct: 352 atagcgtactctactcgtgggcagagctgagcccggggtcattcttcctgcgcctaggca 411 Query: 401 gcctgtgcctggtcacatttacagttctggcggccccaatctcagccgcaagtttcagtc 460 ||||||| ||| |||| || || || || || || || || |||| ||||||||||||| Sbjct: 412 gcctgtggctgatcaccttcacggtgctcgccgcgcccattgcagctgcaagtttcagtc 471 Query: 461 ccggaaaggatccgctcaagtttgtgctggctgctgggattgggaccctgctcctcgt 518 | ||||||||||| ||||| || ||||| || ||||||||||| || ||||||||||| Sbjct: 472 caggaaaggatccactcaaattcgtgctagcagctgggattggaactctgctcctcgt 529
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 81.8 bits (41), Expect = 2e-12 Identities = 83/97 (85%) Strand = Plus / Minus Query: 221 aggaggagccggagagcagccgaagccgcttcgccgggggcggcctgagctgggacccca 280 ||||||||||||| ||||||| ||| |||||||||| |||| | ||||||||||||| Sbjct: 18389314 aggaggagccggaaggcagccgtagcggcttcgccggcggcgttccgagctgggaccccg 18389255 Query: 281 ggatggagatcggagtcccatacgagcaaagaccggt 317 || |||||||| |||||| | ||||||||||||||| Sbjct: 18389254 ggctggagatccaagtccctttcgagcaaagaccggt 18389218 Score = 77.8 bits (39), Expect = 3e-11 Identities = 123/151 (81%) Strand = Plus / Minus Query: 319 aacgagtactccgctctcaaggagagcaccttgtattcgtgggcagagctcagtccaggc 378 |||||||||||||| |||||||| ||| | || |||||||||||||| || || || Sbjct: 18389029 aacgagtactccgccctcaaggatagcgtactctactcgtgggcagagctgagcccgggg 18388970 Query: 379 tccttcttcatgcgcctaggcagcctgtgcctggtcacatttacagttctggcggcccca 438 || |||||| ||||||||||||||||||| ||| |||| || || || || || || || Sbjct: 18388969 tcattcttcctgcgcctaggcagcctgtggctgatcaccttcacggtgctcgccgcgccc 18388910 Query: 439 atctcagccgcaagtttcagtcccggaaagg 469 || |||| |||||||||||||| ||||||| Sbjct: 18388909 attgcagctgcaagtttcagtccaggaaagg 18388879 Score = 48.1 bits (24), Expect = 0.030 Identities = 45/52 (86%) Strand = Plus / Minus Query: 467 aggatccgctcaagtttgtgctggctgctgggattgggaccctgctcctcgt 518 ||||||| ||||| || ||||| || ||||||||||| || ||||||||||| Sbjct: 18388670 aggatccactcaaattcgtgctagcagctgggattggaactctgctcctcgt 18388619
>gb|AC106887.3| Oryza sativa chromosome 3 BAC OSJNBa0054H04 genomic sequence, complete sequence Length = 159579 Score = 81.8 bits (41), Expect = 2e-12 Identities = 83/97 (85%) Strand = Plus / Minus Query: 221 aggaggagccggagagcagccgaagccgcttcgccgggggcggcctgagctgggacccca 280 ||||||||||||| ||||||| ||| |||||||||| |||| | ||||||||||||| Sbjct: 155745 aggaggagccggaaggcagccgtagcggcttcgccggcggcgttccgagctgggaccccg 155686 Query: 281 ggatggagatcggagtcccatacgagcaaagaccggt 317 || |||||||| |||||| | ||||||||||||||| Sbjct: 155685 ggctggagatccaagtccctttcgagcaaagaccggt 155649 Score = 77.8 bits (39), Expect = 3e-11 Identities = 123/151 (81%) Strand = Plus / Minus Query: 319 aacgagtactccgctctcaaggagagcaccttgtattcgtgggcagagctcagtccaggc 378 |||||||||||||| |||||||| ||| | || |||||||||||||| || || || Sbjct: 155460 aacgagtactccgccctcaaggatagcgtactctactcgtgggcagagctgagcccgggg 155401 Query: 379 tccttcttcatgcgcctaggcagcctgtgcctggtcacatttacagttctggcggcccca 438 || |||||| ||||||||||||||||||| ||| |||| || || || || || || || Sbjct: 155400 tcattcttcctgcgcctaggcagcctgtggctgatcaccttcacggtgctcgccgcgccc 155341 Query: 439 atctcagccgcaagtttcagtcccggaaagg 469 || |||| |||||||||||||| ||||||| Sbjct: 155340 attgcagctgcaagtttcagtccaggaaagg 155310 Score = 48.1 bits (24), Expect = 0.030 Identities = 45/52 (86%) Strand = Plus / Minus Query: 467 aggatccgctcaagtttgtgctggctgctgggattgggaccctgctcctcgt 518 ||||||| ||||| || ||||| || ||||||||||| || ||||||||||| Sbjct: 155101 aggatccactcaaattcgtgctagcagctgggattggaactctgctcctcgt 155050
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 81.8 bits (41), Expect = 2e-12 Identities = 83/97 (85%) Strand = Plus / Minus Query: 221 aggaggagccggagagcagccgaagccgcttcgccgggggcggcctgagctgggacccca 280 ||||||||||||| ||||||| ||| |||||||||| |||| | ||||||||||||| Sbjct: 18383355 aggaggagccggaaggcagccgtagcggcttcgccggcggcgttccgagctgggaccccg 18383296 Query: 281 ggatggagatcggagtcccatacgagcaaagaccggt 317 || |||||||| |||||| | ||||||||||||||| Sbjct: 18383295 ggctggagatccaagtccctttcgagcaaagaccggt 18383259 Score = 77.8 bits (39), Expect = 3e-11 Identities = 123/151 (81%) Strand = Plus / Minus Query: 319 aacgagtactccgctctcaaggagagcaccttgtattcgtgggcagagctcagtccaggc 378 |||||||||||||| |||||||| ||| | || |||||||||||||| || || || Sbjct: 18383070 aacgagtactccgccctcaaggatagcgtactctactcgtgggcagagctgagcccgggg 18383011 Query: 379 tccttcttcatgcgcctaggcagcctgtgcctggtcacatttacagttctggcggcccca 438 || |||||| ||||||||||||||||||| ||| |||| || || || || || || || Sbjct: 18383010 tcattcttcctgcgcctaggcagcctgtggctgatcaccttcacggtgctcgccgcgccc 18382951 Query: 439 atctcagccgcaagtttcagtcccggaaagg 469 || |||| |||||||||||||| ||||||| Sbjct: 18382950 attgcagctgcaagtttcagtccaggaaagg 18382920 Score = 48.1 bits (24), Expect = 0.030 Identities = 45/52 (86%) Strand = Plus / Minus Query: 467 aggatccgctcaagtttgtgctggctgctgggattgggaccctgctcctcgt 518 ||||||| ||||| || ||||| || ||||||||||| || ||||||||||| Sbjct: 18382711 aggatccactcaaattcgtgctagcagctgggattggaactctgctcctcgt 18382660
>emb|AJ339470.1|HSA339470 Homo sapiens genomic sequence surrounding NotI site, clone NR5-HB10RS Length = 723 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Plus Query: 261 cggcctgagctgggaccccagga 283 ||||||||||||||||||||||| Sbjct: 254 cggcctgagctgggaccccagga 276
>emb|AL353147.10| Human DNA sequence from clone RP11-188P8 on chromosome 10 Contains the 3' end of a novel gene, a NADH dehydrogenase 2 (MTND2) pseudogene, the 5' end of the gene for tumor endothelial marker 7-related precursor (TEM7R) (FLJ14623) and a CpG island, complete sequence Length = 98002 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Minus Query: 217 aaggaggaggagccggagagca 238 |||||||||||||||||||||| Sbjct: 83487 aaggaggaggagccggagagca 83466
>gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete sequence Length = 2726152 Score = 44.1 bits (22), Expect = 0.46 Identities = 25/26 (96%) Strand = Plus / Plus Query: 121 gcatccccgcggcagttcgccggagc 146 ||||||||||||| |||||||||||| Sbjct: 2538048 gcatccccgcggccgttcgccggagc 2538073
>gb|AC016292.26| Homo sapiens chromosome 17, clone RP11-22G12, complete sequence Length = 104435 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Plus Query: 272 gggaccccaggatggagatcgg 293 |||||||||||||||||||||| Sbjct: 41892 gggaccccaggatggagatcgg 41913
>gb|AC107911.21| Homo sapiens chromosome 17, clone CTD-2507J6, complete sequence Length = 88883 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Minus Query: 272 gggaccccaggatggagatcgg 293 |||||||||||||||||||||| Sbjct: 66169 gggaccccaggatggagatcgg 66148
>ref|NM_197529.1| Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0053C23.29), mRNA Length = 1584 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 218 aggaggaggagccggagagcagccg 242 ||||||||||||||||||| ||||| Sbjct: 12 aggaggaggagccggagagaagccg 36
>gb|AC092389.4| Oryza sativa chromosome 10 BAC OSJNBa0053C23 genomic sequence, complete sequence Length = 194361 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 218 aggaggaggagccggagagcagccg 242 ||||||||||||||||||| ||||| Sbjct: 157149 aggaggaggagccggagagaagccg 157125
>gb|AC092217.1|AC092217 Drosophila melanogaster, chromosome 2L, region 24D-24E, BAC clone BACR11D14, complete sequence Length = 158347 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 180 aaagaggctgaggggcgtggc 200 ||||||||||||||||||||| Sbjct: 114488 aaagaggctgaggggcgtggc 114468
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 218 aggaggaggagccggagagcagccg 242 ||||||||||||||||||| ||||| Sbjct: 20279414 aggaggaggagccggagagaagccg 20279390
>dbj|AK119966.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-184-D10, full insert sequence Length = 2267 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 218 aggaggaggagccggagagcagccg 242 ||||||||||||||||||| ||||| Sbjct: 1425 aggaggaggagccggagagaagccg 1401
>dbj|AK071861.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023123I12, full insert sequence Length = 2123 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 218 aggaggaggagccggagagcagccg 242 ||||||||||||||||||| ||||| Sbjct: 177 aggaggaggagccggagagaagccg 201
>gb|AE003577.4| Drosophila melanogaster chromosome 2L, section 14 of 83 of the complete sequence Length = 290034 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 180 aaagaggctgaggggcgtggc 200 ||||||||||||||||||||| Sbjct: 137119 aaagaggctgaggggcgtggc 137139
>gb|AC004371.1|AC004371 Drosophila melanogaster DNA sequence (P1 DS06482 (D76)), complete sequence Length = 87124 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 180 aaagaggctgaggggcgtggc 200 ||||||||||||||||||||| Sbjct: 47347 aaagaggctgaggggcgtggc 47367
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 218 aggaggaggagccggagagcagccg 242 ||||||||||||||||||| ||||| Sbjct: 20290690 aggaggaggagccggagagaagccg 20290666
>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome Length = 3188609 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 218 aggaggaggagccggagagc 237 |||||||||||||||||||| Sbjct: 2084676 aggaggaggagccggagagc 2084695 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 244 agccgcttcgccgggggcggcctg 267 |||||||||||||||||| ||||| Sbjct: 843383 agccgcttcgccgggggcagcctg 843360
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 7.3 Identities = 29/32 (90%) Strand = Plus / Plus Query: 183 gaggctgaggggcgtggcggtggcgatggcgc 214 ||||| |||| |||||||||||||| |||||| Sbjct: 4095385 gaggccgaggtgcgtggcggtggcggtggcgc 4095416 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,321,327 Number of Sequences: 3902068 Number of extensions: 4321327 Number of successful extensions: 79556 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 21 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 79238 Number of HSP's gapped (non-prelim): 308 length of query: 536 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 513 effective length of database: 17,143,297,704 effective search space: 8794511722152 effective search space used: 8794511722152 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
