ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart54a06 |
|---|---|
| Clone Library Name | barley_pub |
>CG146_ARATH (Q93VG8) UPF0326 protein At4g17486| Length = 224 Score = 229 bits (585), Expect = 3e-60 Identities = 98/154 (63%), Positives = 129/154 (83%) Frame = +1 Query: 130 EEMDAGNDGTTTPVLLNVYDLTPVNDYLYWLGFGVFHSGIEVHGMEYGFGAHDFSSSGVF 309 E ++ + TPV LNVYDLTPVN+YLYW G G+FHSGIE H +EY +GAH++ +SGV+ Sbjct: 15 ERDESSGEAALTPVYLNVYDLTPVNNYLYWFGIGIFHSGIEAHNLEYCYGAHEYPTSGVY 74 Query: 310 EVQSKCCPGFVYRKTVWLGTTDMSREDFRSFIERLAGKYHGNTYNLISKNCNHFTDDVCK 489 EV+ + CPGF++R++V LGTT MSR DFRS++E+L+ KYHG+TY+LI+KNCNHFT++VC Sbjct: 75 EVEPRNCPGFIFRRSVLLGTTSMSRSDFRSYMEKLSRKYHGDTYHLIAKNCNHFTEEVCL 134 Query: 490 NLTGKPIPGWVNRLARVGSVFDCLLPESVQVSPV 591 LTGKPIPGW+NRLARVGS +CLLPES+Q++ V Sbjct: 135 QLTGKPIPGWINRLARVGSFCNCLLPESIQLTAV 168
>CG146_PONPY (Q5R456) UPF0326 protein CGI-146 homolog| Length = 194 Score = 123 bits (309), Expect = 3e-28 Identities = 59/135 (43%), Positives = 84/135 (62%), Gaps = 4/135 (2%) Frame = +1 Query: 154 GTTTPVLLNVYDLTPVNDYLYWLGFGVFHSGIEVHGMEYGFGAHDFSSSGVFEVQ----S 321 G V+LNVYD+ +N+Y +G GVFHSGIEV+G E+ +G H + SG+FE+ S Sbjct: 2 GANQLVVLNVYDMYWMNEYTSSIGIGVFHSGIEVYGREFAYGGHPYPFSGIFEISPGNAS 61 Query: 322 KCCPGFVYRKTVWLGTTDMSREDFRSFIERLAGKYHGNTYNLISKNCNHFTDDVCKNLTG 501 + F +++ V LG+TD +D +E L +Y GN Y+L+ KNCNHF+ + + L G Sbjct: 62 ELGETFKFKEAVVLGSTDFLEDDIEKIVEELGKEYKGNAYHLMHKNCNHFSSALSEILCG 121 Query: 502 KPIPGWVNRLARVGS 546 K IP W+NRLA S Sbjct: 122 KEIPRWINRLAYFSS 136
>CG146_MOUSE (Q9D291) UPF0326 protein CGI-146 homolog| Length = 194 Score = 123 bits (309), Expect = 3e-28 Identities = 59/135 (43%), Positives = 84/135 (62%), Gaps = 4/135 (2%) Frame = +1 Query: 154 GTTTPVLLNVYDLTPVNDYLYWLGFGVFHSGIEVHGMEYGFGAHDFSSSGVFEVQ----S 321 G V+LNVYD+ +N+Y +G GVFHSGIEV+G E+ +G H + SG+FE+ S Sbjct: 2 GANQLVVLNVYDMYWMNEYTSSIGIGVFHSGIEVYGREFAYGGHPYPFSGIFEISPGNAS 61 Query: 322 KCCPGFVYRKTVWLGTTDMSREDFRSFIERLAGKYHGNTYNLISKNCNHFTDDVCKNLTG 501 + F +++ V LG+TD +D +E L +Y GN Y+L+ KNCNHF+ + + L G Sbjct: 62 ELGETFKFKEAVVLGSTDFLEDDIEKIVEELGKEYKGNAYHLMHKNCNHFSSALSEILCG 121 Query: 502 KPIPGWVNRLARVGS 546 K IP W+NRLA S Sbjct: 122 KEIPRWINRLAYFSS 136
>CG146_HUMAN (Q9BSY9) UPF0326 protein CGI-146| Length = 194 Score = 123 bits (309), Expect = 3e-28 Identities = 59/135 (43%), Positives = 84/135 (62%), Gaps = 4/135 (2%) Frame = +1 Query: 154 GTTTPVLLNVYDLTPVNDYLYWLGFGVFHSGIEVHGMEYGFGAHDFSSSGVFEVQ----S 321 G V+LNVYD+ +N+Y +G GVFHSGIEV+G E+ +G H + SG+FE+ S Sbjct: 2 GANQLVVLNVYDMYWMNEYTSSIGIGVFHSGIEVYGREFAYGGHPYPFSGIFEISPGNAS 61 Query: 322 KCCPGFVYRKTVWLGTTDMSREDFRSFIERLAGKYHGNTYNLISKNCNHFTDDVCKNLTG 501 + F +++ V LG+TD +D +E L +Y GN Y+L+ KNCNHF+ + + L G Sbjct: 62 ELGETFKFKEAVVLGSTDFLEDDIEKIVEELGKEYKGNAYHLMHKNCNHFSSALSEILCG 121 Query: 502 KPIPGWVNRLARVGS 546 K IP W+NRLA S Sbjct: 122 KEIPRWINRLAYFSS 136
>HAG1_SCHPO (Q8X1T0) UPF0326 protein hag1| Length = 201 Score = 100 bits (248), Expect = 4e-21 Identities = 51/133 (38%), Positives = 81/133 (60%), Gaps = 5/133 (3%) Frame = +1 Query: 169 VLLNVYDL---TPVNDYLYWLGFGVFHSGIEVHGMEYGFGAHDF-SSSGVFEVQSKC-CP 333 V +NVYDL +PVN + LG G++H+G+ + G EY FGAH+ S+GVF + Sbjct: 3 VYINVYDLMPDSPVNKLAWTLGLGIYHTGLVLEGKEYAFGAHEIPGSTGVFATMPRPPLE 62 Query: 334 GFVYRKTVWLGTTDMSREDFRSFIERLAGKYHGNTYNLISKNCNHFTDDVCKNLTGKPIP 513 G +R ++ L + + D + RL+ ++ G +Y+L+ +NCNHFT+ LTG PIP Sbjct: 63 GCRWRCSIALPNCTLPKPDVDRILIRLSQEFTGLSYSLLERNCNHFTNAAAIELTGSPIP 122 Query: 514 GWVNRLARVGSVF 552 ++NR++R+G F Sbjct: 123 SFLNRISRIGLAF 135
>AACA_STAWA (Q7ATH7) Bifunctional AAC/APH [Includes: 6'-aminoglycoside| N-acetyltransferase (EC 2.3.1.-) (AAC(6')); 2''-aminoglycoside phosphotransferase (EC 2.7.1.-) (APH(2''))] Length = 479 Score = 31.2 bits (69), Expect = 2.4 Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 3/87 (3%) Frame = +1 Query: 250 EVHGMEYGFGAHDFSSSGVFEVQSKCCPGFVYRKTVWLGTTDMSREDFRSFIERLAGKYH 429 ++HG++Y D S + Q+ + R+T++ TD+ ++ SF+ERL Sbjct: 308 QMHGLDYT----DISECTIDNKQNVLEEYILLRETIYNDLTDIEKDYIESFMERLNATTV 363 Query: 430 GNTYNLISKN---CNHFTDDVCKNLTG 501 + N CNH D LTG Sbjct: 364 FEGKKCLCHNDFSCNHLLLDGNNRLTG 390
>AACA_STASC (Q7ATH9) Bifunctional AAC/APH [Includes: 6'-aminoglycoside| N-acetyltransferase (EC 2.3.1.-) (AAC(6')); 2''-aminoglycoside phosphotransferase (EC 2.7.1.-) (APH(2''))] Length = 479 Score = 31.2 bits (69), Expect = 2.4 Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 3/87 (3%) Frame = +1 Query: 250 EVHGMEYGFGAHDFSSSGVFEVQSKCCPGFVYRKTVWLGTTDMSREDFRSFIERLAGKYH 429 ++HG++Y D S + Q+ + R+T++ TD+ ++ SF+ERL Sbjct: 308 QMHGLDYT----DISECTIDNKQNVLEEYILLRETIYNDLTDIEKDYIESFMERLNATTV 363 Query: 430 GNTYNLISKN---CNHFTDDVCKNLTG 501 + N CNH D LTG Sbjct: 364 FEGKKCLCHNDFSCNHLLLDGNNRLTG 390
>AACA_STAHJ (Q4L605) Bifunctional AAC/APH [Includes: 6'-aminoglycoside| N-acetyltransferase (EC 2.3.1.-) (AAC(6')); 2''-aminoglycoside phosphotransferase (EC 2.7.1.-) (APH(2''))] Length = 479 Score = 31.2 bits (69), Expect = 2.4 Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 3/87 (3%) Frame = +1 Query: 250 EVHGMEYGFGAHDFSSSGVFEVQSKCCPGFVYRKTVWLGTTDMSREDFRSFIERLAGKYH 429 ++HG++Y D S + Q+ + R+T++ TD+ ++ SF+ERL Sbjct: 308 QMHGLDYT----DISECTIDNKQNVLEEYILLRETIYNDLTDIEKDYIESFMERLNATTV 363 Query: 430 GNTYNLISKN---CNHFTDDVCKNLTG 501 + N CNH D LTG Sbjct: 364 FEGKKCLCHNDFSCNHLLLDGNNRLTG 390
>AACA_STAEQ (Q5HMP3) Bifunctional AAC/APH [Includes: 6'-aminoglycoside| N-acetyltransferase (EC 2.3.1.-) (AAC(6')); 2''-aminoglycoside phosphotransferase (EC 2.7.1.-) (APH(2''))] Length = 479 Score = 31.2 bits (69), Expect = 2.4 Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 3/87 (3%) Frame = +1 Query: 250 EVHGMEYGFGAHDFSSSGVFEVQSKCCPGFVYRKTVWLGTTDMSREDFRSFIERLAGKYH 429 ++HG++Y D S + Q+ + R+T++ TD+ ++ SF+ERL Sbjct: 308 QMHGLDYT----DISECTIDNKQNVLEEYILLRETIYNDLTDIEKDYIESFMERLNATTV 363 Query: 430 GNTYNLISKN---CNHFTDDVCKNLTG 501 + N CNH D LTG Sbjct: 364 FEGKKCLCHNDFSCNHLLLDGNNRLTG 390
>AACA_STAAU (P0A0C1) Bifunctional AAC/APH [Includes: 6'-aminoglycoside| N-acetyltransferase (EC 2.3.1.-) (AAC(6')); 2''-aminoglycoside phosphotransferase (EC 2.7.1.-) (APH(2''))] Length = 479 Score = 31.2 bits (69), Expect = 2.4 Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 3/87 (3%) Frame = +1 Query: 250 EVHGMEYGFGAHDFSSSGVFEVQSKCCPGFVYRKTVWLGTTDMSREDFRSFIERLAGKYH 429 ++HG++Y D S + Q+ + R+T++ TD+ ++ SF+ERL Sbjct: 308 QMHGLDYT----DISECTIDNKQNVLEEYILLRETIYNDLTDIEKDYIESFMERLNATTV 363 Query: 430 GNTYNLISKN---CNHFTDDVCKNLTG 501 + N CNH D LTG Sbjct: 364 FEGKKCLCHNDFSCNHLLLDGNNRLTG 390
>AACA_STAAM (P0A0C0) Bifunctional AAC/APH [Includes: 6'-aminoglycoside| N-acetyltransferase (EC 2.3.1.-) (AAC(6')); 2''-aminoglycoside phosphotransferase (EC 2.7.1.-) (APH(2''))] Length = 479 Score = 31.2 bits (69), Expect = 2.4 Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 3/87 (3%) Frame = +1 Query: 250 EVHGMEYGFGAHDFSSSGVFEVQSKCCPGFVYRKTVWLGTTDMSREDFRSFIERLAGKYH 429 ++HG++Y D S + Q+ + R+T++ TD+ ++ SF+ERL Sbjct: 308 QMHGLDYT----DISECTIDNKQNVLEEYILLRETIYNDLTDIEKDYIESFMERLNATTV 363 Query: 430 GNTYNLISKN---CNHFTDDVCKNLTG 501 + N CNH D LTG Sbjct: 364 FEGKKCLCHNDFSCNHLLLDGNNRLTG 390
>AACA_ENTFC (Q52S23) Bifunctional AAC/APH [Includes: 6'-aminoglycoside| N-acetyltransferase (EC 2.3.1.-) (AAC(6')); 2''-aminoglycoside phosphotransferase (EC 2.7.1.-) (APH(2''))] Length = 479 Score = 31.2 bits (69), Expect = 2.4 Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 3/87 (3%) Frame = +1 Query: 250 EVHGMEYGFGAHDFSSSGVFEVQSKCCPGFVYRKTVWLGTTDMSREDFRSFIERLAGKYH 429 ++HG++Y D S + Q+ + R+T++ TD+ ++ SF+ERL Sbjct: 308 QMHGLDYT----DISECTIDNKQNVLEEYILLRETIYNDLTDIEKDYIESFMERLNATTV 363 Query: 430 GNTYNLISKN---CNHFTDDVCKNLTG 501 + N CNH D LTG Sbjct: 364 FEGKKCLCHNDFSCNHLLLDGNNRLTG 390
>AACA_ENTFA (P0A0C2) Bifunctional AAC/APH [Includes: 6'-aminoglycoside| N-acetyltransferase (EC 2.3.1.-) (AAC(6')); 2''-aminoglycoside phosphotransferase (EC 2.7.1.-) (APH(2''))] Length = 479 Score = 31.2 bits (69), Expect = 2.4 Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 3/87 (3%) Frame = +1 Query: 250 EVHGMEYGFGAHDFSSSGVFEVQSKCCPGFVYRKTVWLGTTDMSREDFRSFIERLAGKYH 429 ++HG++Y D S + Q+ + R+T++ TD+ ++ SF+ERL Sbjct: 308 QMHGLDYT----DISECTIDNKQNVLEEYILLRETIYNDLTDIEKDYIESFMERLNATTV 363 Query: 430 GNTYNLISKN---CNHFTDDVCKNLTG 501 + N CNH D LTG Sbjct: 364 FEGKKCLCHNDFSCNHLLLDGNNRLTG 390
>GON4L_MOUSE (Q9DB00) GON-4-like protein (GON-4 homolog)| Length = 2260 Score = 29.3 bits (64), Expect = 9.0 Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 5/35 (14%) Frame = -3 Query: 323 FDCTSNTPLDEKSCAP-----NPYSMP*TSIPEWK 234 F C+ N PL S +P NP ++P TSIPE K Sbjct: 1200 FPCSLNQPLVASSISPLIVSSNPLTLPVTSIPEDK 1234
>HEM3_SYNEL (Q8DIE4) Porphobilinogen deaminase (EC 2.5.1.61) (PBG)| (Hydroxymethylbilane synthase) (HMBS) (Pre-uroporphyrinogen synthase) Length = 320 Score = 29.3 bits (64), Expect = 9.0 Identities = 13/38 (34%), Positives = 20/38 (52%) Frame = -1 Query: 385 PETCQLCLATPSFYRQIQGNISIAPQIHRWMRNHVLQI 272 PET CLA +F RQ++G + +H + N L + Sbjct: 228 PETTARCLAERAFLRQLEGGCQVPIGVHTVIENGQLTL 265
>I17RB_MOUSE (Q9JIP3) Interleukin-17 receptor B precursor (IL-17 receptor B)| (IL-17RB) (Interleukin-17B receptor) (IL-17B receptor) (IL-17 receptor homolog 1) (IL-17Rh1) (IL17Rh1) (IL-17ER) Length = 499 Score = 29.3 bits (64), Expect = 9.0 Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 2/59 (3%) Frame = -1 Query: 580 LGHFLVVDSQ--KPSLLWPTYSPSQGWVFQSSSYRHHL*NDCSSLKSNYMYCHDTSLQV 410 LG V++++ + S+ P S+G V Q + Y H NDC + + C +TS + Sbjct: 217 LGFSRVLENKLMRTSVAIPVTEESEGAVVQLTPYLHTCGNDCIRREGTVVLCSETSAPI 275 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 80,119,148 Number of Sequences: 219361 Number of extensions: 1677449 Number of successful extensions: 4315 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 4188 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4311 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5196311029 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
