ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart53h06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1KRA58_HUMAN (O75690) Keratin-associated protein 5-8 (Keratin-ass... 28 6.9
2KRA57_HUMAN (Q6L8G8) Keratin-associated protein 5-7 (Keratin-ass... 28 6.9
3TOG3A_AGEAP (P33034) Omega-agatoxin-3A (Omega-agatoxin IIIA) (Om... 27 9.0

>KRA58_HUMAN (O75690) Keratin-associated protein 5-8 (Keratin-associated protein|
           5.8) (Ultrahigh sulfur keratin-associated protein 5.8)
           (Keratin, ultra high-sulfur matrix protein B) (UHS
           keratin B) (UHS KerB)
          Length = 187

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 11/23 (47%), Positives = 13/23 (56%), Gaps = 3/23 (13%)
 Frame = +1

Query: 172 CGGHKGG---CECHRRRLYRKCC 231
           CGG KGG   C C +   Y+ CC
Sbjct: 73  CGGSKGGCGSCGCSQCSCYKPCC 95



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>KRA57_HUMAN (Q6L8G8) Keratin-associated protein 5-7 (Keratin-associated protein|
           5.7) (Ultrahigh sulfur keratin-associated protein 5.7)
           (Keratin-associated protein 5-3) (Keratin-associated
           protein 5.3)
          Length = 165

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 11/23 (47%), Positives = 13/23 (56%), Gaps = 3/23 (13%)
 Frame = +1

Query: 172 CGGHKGG---CECHRRRLYRKCC 231
           CGG KGG   C C +   Y+ CC
Sbjct: 80  CGGSKGGCGSCGCSQCSCYKPCC 102



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>TOG3A_AGEAP (P33034) Omega-agatoxin-3A (Omega-agatoxin IIIA) (Omega-Aga-IIIA)|
          Length = 76

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +1

Query: 169 DCGGHKGGCECHRRRLYRKC 228
           DC G K  C+C RR  Y  C
Sbjct: 8   DCDGEKDDCQCCRRNGYCSC 27


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,532,376
Number of Sequences: 219361
Number of extensions: 432236
Number of successful extensions: 899
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 853
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 897
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 1370455656
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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