Clone Name | bart53h02 |
---|---|
Clone Library Name | barley_pub |
>dbj|AK071066.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023081B09, full insert sequence Length = 1752 Score = 188 bits (95), Expect = 1e-44 Identities = 136/152 (89%) Strand = Plus / Plus Query: 254 tgatgaaaagaaaggtggattgcgtggcaaactnnnnnnngttgttctagcttacagcgg 313 |||| |||||||||||||| ||||||||||||| ||||||||||||||||| || Sbjct: 265 tgatcaaaagaaaggtggactgcgtggcaaactgaataaagttgttctagcttacagtgg 324 Query: 314 tggcttggatacatcagtaattgttccatggcttagggagaactatggctgtgaagtcgt 373 ||| |||||||||||||| |||||||||||||| ||||||||||||| |||||||| || Sbjct: 325 tggtttggatacatcagttattgttccatggctccgggagaactatggttgtgaagttgt 384 Query: 374 ctgtttcactgctgatgttggccagggtgaca 405 |||||||||||||||||||||||||||||||| Sbjct: 385 ctgtttcactgctgatgttggccagggtgaca 416
>gb|AY104216.1| Zea mays PCO109946 mRNA sequence Length = 1750 Score = 145 bits (73), Expect = 1e-31 Identities = 100/109 (91%) Strand = Plus / Plus Query: 294 gttgttctagcttacagcggtggcttggatacatcagtaattgttccatggcttagggag 353 |||||| ||||||| || ||||| ||||||||||| || |||||||||||||| |||||| Sbjct: 350 gttgttttagcttatagtggtggtttggatacatccgttattgttccatggctcagggag 409 Query: 354 aactatggctgtgaagtcgtctgtttcactgctgatgttggccagggtg 402 |||||||| ||||||||||| |||||||||||||||||||||||||||| Sbjct: 410 aactatggttgtgaagtcgtttgtttcactgctgatgttggccagggtg 458
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 103 bits (52), Expect = 4e-19 Identities = 81/93 (87%) Strand = Plus / Plus Query: 254 tgatgaaaagaaaggtggattgcgtggcaaactnnnnnnngttgttctagcttacagcgg 313 |||| |||||||||||||| ||||||||||||| ||||||||||||||||| || Sbjct: 7430601 tgatcaaaagaaaggtggactgcgtggcaaactgaataaagttgttctagcttacagtgg 7430660 Query: 314 tggcttggatacatcagtaattgttccatggct 346 ||| |||||||||||||| |||||||||||||| Sbjct: 7430661 tggtttggatacatcagttattgttccatggct 7430693 Score = 87.7 bits (44), Expect = 3e-14 Identities = 50/52 (96%) Strand = Plus / Plus Query: 348 agggagaactatggctgtgaagtcgtctgtttcactgctgatgttggccagg 399 |||||||||||||| |||||||| |||||||||||||||||||||||||||| Sbjct: 7430794 agggagaactatggttgtgaagttgtctgtttcactgctgatgttggccagg 7430845
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 103 bits (52), Expect = 4e-19 Identities = 81/93 (87%) Strand = Plus / Plus Query: 254 tgatgaaaagaaaggtggattgcgtggcaaactnnnnnnngttgttctagcttacagcgg 313 |||| |||||||||||||| ||||||||||||| ||||||||||||||||| || Sbjct: 7430480 tgatcaaaagaaaggtggactgcgtggcaaactgaataaagttgttctagcttacagtgg 7430539 Query: 314 tggcttggatacatcagtaattgttccatggct 346 ||| |||||||||||||| |||||||||||||| Sbjct: 7430540 tggtttggatacatcagttattgttccatggct 7430572 Score = 87.7 bits (44), Expect = 3e-14 Identities = 50/52 (96%) Strand = Plus / Plus Query: 348 agggagaactatggctgtgaagtcgtctgtttcactgctgatgttggccagg 399 |||||||||||||| |||||||| |||||||||||||||||||||||||||| Sbjct: 7430673 agggagaactatggttgtgaagttgtctgtttcactgctgatgttggccagg 7430724
>emb|AL731756.4|CNS08C85 Oryza sativa chromosome 12, . BAC OJ1220_D01 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 98782 Score = 103 bits (52), Expect = 4e-19 Identities = 81/93 (87%) Strand = Plus / Plus Query: 254 tgatgaaaagaaaggtggattgcgtggcaaactnnnnnnngttgttctagcttacagcgg 313 |||| |||||||||||||| ||||||||||||| ||||||||||||||||| || Sbjct: 20277 tgatcaaaagaaaggtggactgcgtggcaaactgaataaagttgttctagcttacagtgg 20336 Query: 314 tggcttggatacatcagtaattgttccatggct 346 ||| |||||||||||||| |||||||||||||| Sbjct: 20337 tggtttggatacatcagttattgttccatggct 20369 Score = 87.7 bits (44), Expect = 3e-14 Identities = 50/52 (96%) Strand = Plus / Plus Query: 348 agggagaactatggctgtgaagtcgtctgtttcactgctgatgttggccagg 399 |||||||||||||| |||||||| |||||||||||||||||||||||||||| Sbjct: 20470 agggagaactatggttgtgaagttgtctgtttcactgctgatgttggccagg 20521
>ref|NM_118616.3| Arabidopsis thaliana ATP binding / argininosuccinate synthase AT4G24830 mRNA, complete cds Length = 1750 Score = 95.6 bits (48), Expect = 1e-16 Identities = 90/104 (86%) Strand = Plus / Plus Query: 297 gttctagcttacagcggtggcttggatacatcagtaattgttccatggcttagggagaac 356 |||||||||||||| || ||||| || || || || ||||| |||||||||| ||||||| Sbjct: 351 gttctagcttacagtggaggcttagacacctctgtcattgtgccatggcttaaggagaac 410 Query: 357 tatggctgtgaagtcgtctgtttcactgctgatgttggccaggg 400 ||||| |||||||| || || ||||||||||||||||| ||||| Sbjct: 411 tatggttgtgaagttgtgtgcttcactgctgatgttggtcaggg 454
>gb|AY091319.1| Arabidopsis thaliana putative argininosuccinate synthase (At4g24830) mRNA, complete cds Length = 1516 Score = 95.6 bits (48), Expect = 1e-16 Identities = 90/104 (86%) Strand = Plus / Plus Query: 297 gttctagcttacagcggtggcttggatacatcagtaattgttccatggcttagggagaac 356 |||||||||||||| || ||||| || || || || ||||| |||||||||| ||||||| Sbjct: 298 gttctagcttacagtggaggcttagacacctctgtcattgtgccatggcttaaggagaac 357 Query: 357 tatggctgtgaagtcgtctgtttcactgctgatgttggccaggg 400 ||||| |||||||| || || ||||||||||||||||| ||||| Sbjct: 358 tatggttgtgaagttgtgtgcttcactgctgatgttggtcaggg 401
>gb|AY065252.1| Arabidopsis thaliana putative argininosuccinate synthase (At4g24830) mRNA, complete cds Length = 1718 Score = 95.6 bits (48), Expect = 1e-16 Identities = 90/104 (86%) Strand = Plus / Plus Query: 297 gttctagcttacagcggtggcttggatacatcagtaattgttccatggcttagggagaac 356 |||||||||||||| || ||||| || || || || ||||| |||||||||| ||||||| Sbjct: 351 gttctagcttacagtggaggcttagacacctctgtcattgtgccatggcttaaggagaac 410 Query: 357 tatggctgtgaagtcgtctgtttcactgctgatgttggccaggg 400 ||||| |||||||| || || ||||||||||||||||| ||||| Sbjct: 411 tatggttgtgaagttgtgtgcttcactgctgatgttggtcaggg 454
>emb|BX827386.1|CNS0A2HY Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS48ZH08 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1721 Score = 95.6 bits (48), Expect = 1e-16 Identities = 90/104 (86%) Strand = Plus / Plus Query: 297 gttctagcttacagcggtggcttggatacatcagtaattgttccatggcttagggagaac 356 |||||||||||||| || ||||| || || || || ||||| |||||||||| ||||||| Sbjct: 332 gttctagcttacagtggaggcttagacacctctgtcattgtgccatggcttaaggagaac 391 Query: 357 tatggctgtgaagtcgtctgtttcactgctgatgttggccaggg 400 ||||| |||||||| || || ||||||||||||||||| ||||| Sbjct: 392 tatggttgtgaagttgtgtgcttcactgctgatgttggtcaggg 435
>emb|AL161562.2|ATCHRIV62 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 62 Length = 197070 Score = 65.9 bits (33), Expect = 9e-08 Identities = 48/53 (90%) Strand = Plus / Minus Query: 347 tagggagaactatggctgtgaagtcgtctgtttcactgctgatgttggccagg 399 ||||||||||||||| |||||||| || || ||||||||||||||||| |||| Sbjct: 69297 tagggagaactatggttgtgaagttgtgtgcttcactgctgatgttggtcagg 69245 Score = 40.1 bits (20), Expect = 5.4 Identities = 44/52 (84%) Strand = Plus / Minus Query: 297 gttctagcttacagcggtggcttggatacatcagtaattgttccatggctta 348 |||||||||||||| || ||||| || || || || ||||| |||||||||| Sbjct: 69466 gttctagcttacagtggaggcttagacacctctgtcattgtgccatggctta 69415
>emb|AL049657.1|ATF6I7 Arabidopsis thaliana DNA chromosome 4, BAC clone F6I7 (ESSA project) Length = 95185 Score = 65.9 bits (33), Expect = 9e-08 Identities = 48/53 (90%) Strand = Plus / Minus Query: 347 tagggagaactatggctgtgaagtcgtctgtttcactgctgatgttggccagg 399 ||||||||||||||| |||||||| || || ||||||||||||||||| |||| Sbjct: 39873 tagggagaactatggttgtgaagttgtgtgcttcactgctgatgttggtcagg 39821 Score = 40.1 bits (20), Expect = 5.4 Identities = 44/52 (84%) Strand = Plus / Minus Query: 297 gttctagcttacagcggtggcttggatacatcagtaattgttccatggctta 348 |||||||||||||| || ||||| || || || || ||||| |||||||||| Sbjct: 40042 gttctagcttacagtggaggcttagacacctctgtcattgtgccatggctta 39991
>ref|XM_396374.2| PREDICTED: Apis mellifera similar to Zgc:92051 (LOC412923), mRNA Length = 1239 Score = 54.0 bits (27), Expect = 4e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 294 gttgttctagcttacagcggtggcttggatacatc 328 |||||||||||||| |||||||||||||| ||||| Sbjct: 22 gttgttctagcttatagcggtggcttggacacatc 56
>gb|AC126782.23| Medicago truncatula clone mth2-14p11, complete sequence Length = 135659 Score = 46.1 bits (23), Expect = 0.088 Identities = 35/39 (89%) Strand = Plus / Minus Query: 351 gagaactatggctgtgaagtcgtctgtttcactgctgat 389 ||||||||||||||||| || || || |||||||||||| Sbjct: 25778 gagaactatggctgtgatgttgtttgcttcactgctgat 25740
>ref|XM_744235.1| Aspergillus fumigatus Af293 haloacid dehalogenase-like hydrolase (Afu2g01930) partial mRNA Length = 1524 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 33 agtcttccacccccgccgccc 53 ||||||||||||||||||||| Sbjct: 639 agtcttccacccccgccgccc 659
>emb|CT009609.1| Desulfococcus multivorans vrl island Length = 89210 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 61 cgctcccgatgcgccgcctcg 81 ||||||||||||||||||||| Sbjct: 6891 cgctcccgatgcgccgcctcg 6871
>gb|AE014291.4| Brucella suis 1330 chromosome I, complete sequence Length = 2107794 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 43 ccccgccgcccaccatgccg 62 |||||||||||||||||||| Sbjct: 540362 ccccgccgcccaccatgccg 540343
>gb|AC113332.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1057_B02, complete sequence Length = 99795 Score = 40.1 bits (20), Expect = 5.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 69 atgcgccgcctcgccgctgctccgtcgc 96 ||||||| ||||| |||||||||||||| Sbjct: 84825 atgcgccacctcggcgctgctccgtcgc 84798
>gb|AC072054.10| Homo sapiens BAC clone RP11-33P21 from 7, complete sequence Length = 154037 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 27 gacccaagtcttccaccccc 46 |||||||||||||||||||| Sbjct: 76545 gacccaagtcttccaccccc 76564
>ref|XM_501408.1| Yarrowia lipolytica CLIB122, YALI0C03652g predicted mRNA Length = 1641 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 381 actgctgatgttggccaggg 400 |||||||||||||||||||| Sbjct: 691 actgctgatgttggccaggg 672
>gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete sequence Length = 2726152 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 65 cccgatgcgccgcctcgccgctgc 88 |||||||||||||| ||||||||| Sbjct: 1198632 cccgatgcgccgccccgccgctgc 1198655
>emb|AL078624.24|HSDJ799G3 Human DNA sequence from clone RP4-799G3 on chromosome 1q42.11-42.3 Contains STSs and GSSs, complete sequence Length = 127639 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 320 ggatacatcagtaattgttccatg 343 ||||||||||| |||||||||||| Sbjct: 81330 ggatacatcaggaattgttccatg 81353
>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome Length = 4940217 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 143 gctccggcgacaacatggccgggt 166 |||||||||||||| ||||||||| Sbjct: 917899 gctccggcgacaacgtggccgggt 917876
>dbj|AB168627.1| Macaca fascicularis testis cDNA clone: QtsA-13625, similar to human methionine adenosyltransferase II, alpha (MAT2A), mRNA, RefSeq: NM_005911.4 Length = 2005 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 73 gccgcctcgccgctgctccgtcgc 96 ||||||||||||||||||| |||| Sbjct: 69 gccgcctcgccgctgctccttcgc 92
>dbj|AB168273.1| Macaca fascicularis testis cDNA clone: QtsA-10874, similar to human methionine adenosyltransferase II, alpha (MAT2A), mRNA, RefSeq: NM_005911.4 Length = 2870 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 73 gccgcctcgccgctgctccgtcgc 96 ||||||||||||||||||| |||| Sbjct: 102 gccgcctcgccgctgctccttcgc 125
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 137 cgttcggctccggcgacaac 156 |||||||||||||||||||| Sbjct: 18333558 cgttcggctccggcgacaac 18333577
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 5.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 69 atgcgccgcctcgccgctgctccgtcgc 96 ||||||| ||||| |||||||||||||| Sbjct: 24482152 atgcgccacctcggcgctgctccgtcgc 24482125
>gb|AE009576.1| Brucella melitensis 16M chromosome I, section 133 of 195 of the complete sequence Length = 10598 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 43 ccccgccgcccaccatgccg 62 |||||||||||||||||||| Sbjct: 8398 ccccgccgcccaccatgccg 8417
>dbj|AP005633.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0463G11 Length = 154188 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 137 cgttcggctccggcgacaac 156 |||||||||||||||||||| Sbjct: 48294 cgttcggctccggcgacaac 48313
>dbj|AK110627.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-169-B04, full insert sequence Length = 1006 Score = 40.1 bits (20), Expect = 5.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 69 atgcgccgcctcgccgctgctccgtcgc 96 ||||||| ||||| |||||||||||||| Sbjct: 122 atgcgccacctcggcgctgctccgtcgc 95
>dbj|AK109596.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-137-D05, full insert sequence Length = 2103 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 137 cgttcggctccggcgacaac 156 |||||||||||||||||||| Sbjct: 737 cgttcggctccggcgacaac 756
>gb|CP000009.1| Gluconobacter oxydans 621H, complete genome Length = 2702173 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 60 ccgctcccgatgcgccgcct 79 |||||||||||||||||||| Sbjct: 230694 ccgctcccgatgcgccgcct 230713
>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome Length = 4941439 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 143 gctccggcgacaacatggccgggt 166 |||||||||||||| ||||||||| Sbjct: 948091 gctccggcgacaacgtggccgggt 948068
>emb|CR382129.1| Yarrowia lipolytica chromosome C of strain CLIB122 of Yarrowia lipolytica Length = 3272609 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 381 actgctgatgttggccaggg 400 |||||||||||||||||||| Sbjct: 485226 actgctgatgttggccaggg 485245
>gb|U01148.1|CHKSRC3 Gallus gallus c-src protein (c-src) gene, complete cds Length = 2048 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 42 cccccgccgcccaccatgccgctc 65 |||||||| ||||||||||||||| Sbjct: 1967 cccccgccccccaccatgccgctc 1944 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,115,036 Number of Sequences: 3902068 Number of extensions: 3115036 Number of successful extensions: 61239 Number of sequences better than 10.0: 34 Number of HSP's better than 10.0 without gapping: 34 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 60932 Number of HSP's gapped (non-prelim): 303 length of query: 405 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 383 effective length of database: 17,147,199,772 effective search space: 6567377512676 effective search space used: 6567377512676 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)