ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart53h01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1TERT_HUMAN (O14746) Telomerase reverse transcriptase (EC 2.7.7.4... 27 8.9
2POLG_DEN1S (P33478) Genome polyprotein [Contains: Capsid protein... 27 8.9
3DCUP_AQUAE (O66667) Uroporphyrinogen decarboxylase (EC 4.1.1.37)... 27 8.9

>TERT_HUMAN (O14746) Telomerase reverse transcriptase (EC 2.7.7.49) (Telomerase|
           catalytic subunit) (HEST2) (Telomerase-associated
           protein 2) (TP2)
          Length = 1132

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = -1

Query: 376 PDPAAAASRRRVGGCHQGRSWRRRSQGLPLRVSAVGA 266
           P P A+  RRR+G C +  +   R  G+PL + A GA
Sbjct: 186 PPPHASGPRRRLG-CERAWNHSVREAGVPLGLPAPGA 221



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>POLG_DEN1S (P33478) Genome polyprotein [Contains: Capsid protein C (Core|
            protein); Envelope protein M (Matrix protein); Major
            envelope protein E; Nonstructural protein 1 (NS1);
            Nonstructural protein 2A (NS2A); Flavivirin protease NS2B
            regulatory subunit;
          Length = 3396

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 14/30 (46%), Positives = 16/30 (53%), Gaps = 7/30 (23%)
 Frame = -1

Query: 403  PRWLSERSFPDPAA-------AASRRRVGG 335
            PRWL  R++ DP A       AA RR V G
Sbjct: 2068 PRWLDARTYSDPLALREFKEFAAGRRSVSG 2097



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>DCUP_AQUAE (O66667) Uroporphyrinogen decarboxylase (EC 4.1.1.37) (URO-D) (UPD)|
          Length = 338

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -2

Query: 396 GFLSAPFRTLLLLLPGGASED 334
           GF  APF  L  L+ GGAS+D
Sbjct: 135 GFAGAPFTLLSYLIEGGASKD 155


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,716,362
Number of Sequences: 219361
Number of extensions: 551931
Number of successful extensions: 1332
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1304
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1332
length of database: 80,573,946
effective HSP length: 111
effective length of database: 56,224,875
effective search space used: 1349397000
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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