ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart53g08 |
|---|---|
| Clone Library Name | barley_pub |
>R126B_XENLA (Q6IRP0) RING finger protein 126-B| Length = 312 Score = 37.4 bits (85), Expect = 0.017 Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 2/41 (4%) Frame = +3 Query: 192 MAEAA--ITRYWCHECQQAVEEAMVEELKCPLCDGGFVEEM 308 MAEA RY+CH C + + E CP CD GF+EE+ Sbjct: 1 MAEALPEAGRYFCHSCTAEITPRL-PEYTCPRCDSGFIEEL 40
>R126A_XENLA (Q7T0Q3) RING finger protein 126-A| Length = 312 Score = 37.4 bits (85), Expect = 0.017 Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 2/41 (4%) Frame = +3 Query: 192 MAEAA--ITRYWCHECQQAVEEAMVEELKCPLCDGGFVEEM 308 MAEA RY+CH C + + E CP CD GF+EE+ Sbjct: 1 MAEALPKAGRYFCHSCTAEITPRL-PEYTCPRCDSGFIEEL 40
>RN126_XENTR (Q6DIP3) RING finger protein 126| Length = 311 Score = 36.6 bits (83), Expect = 0.028 Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 2/41 (4%) Frame = +3 Query: 192 MAEAA--ITRYWCHECQQAVEEAMVEELKCPLCDGGFVEEM 308 MAEA RY+CH C + + E CP CD GF+EE+ Sbjct: 1 MAEALPEAGRYFCHSCTAEIIPRL-PEYTCPRCDSGFIEEL 40
>ZN364_MOUSE (Q9D0C1) Zinc finger protein 364 (Rabring 7)| Length = 305 Score = 35.8 bits (81), Expect = 0.049 Identities = 15/35 (42%), Positives = 22/35 (62%) Frame = +3 Query: 204 AITRYWCHECQQAVEEAMVEELKCPLCDGGFVEEM 308 A R++CH C+ V + E + CP CD GF+EE+ Sbjct: 16 AAHRFFCHFCKGEVNPKLPEYI-CPRCDSGFIEEV 49
>RN126_MOUSE (Q91YL2) RING finger protein 126| Length = 313 Score = 35.8 bits (81), Expect = 0.049 Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 2/69 (2%) Frame = +3 Query: 192 MAEAAIT--RYWCHECQQAVEEAMVEELKCPLCDGGFVEEMIGEHFEALASQLSEQGPTQ 365 MAEA+ RY+CH C + + + + CP C+ GF+EE+ E PT Sbjct: 1 MAEASPQPGRYFCHCCSVEIVPRLPDYI-CPRCESGFIEELPEETRNTENGSAPSTAPT- 58 Query: 366 WDPXGHPFE 392 D PFE Sbjct: 59 -DQNRQPFE 66
>ZN364_HUMAN (Q9Y4L5) Zinc finger protein 364 (Rabring 7) (RING finger protein| 115) Length = 304 Score = 35.4 bits (80), Expect = 0.063 Identities = 15/38 (39%), Positives = 23/38 (60%) Frame = +3 Query: 195 AEAAITRYWCHECQQAVEEAMVEELKCPLCDGGFVEEM 308 A A R++CH C+ V + E + CP C+ GF+EE+ Sbjct: 13 AAVAAHRFFCHFCKGEVSPKLPEYI-CPRCESGFIEEV 49
>RN126_HUMAN (Q9BV68) RING finger protein 126| Length = 326 Score = 33.1 bits (74), Expect = 0.31 Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 2/41 (4%) Frame = +3 Query: 192 MAEAAIT--RYWCHECQQAVEEAMVEELKCPLCDGGFVEEM 308 MAEA+ RY+CH C + + + + CP C+ GF+EE+ Sbjct: 1 MAEASPHPGRYFCHCCSVEIVPRLPDYI-CPRCESGFIEEL 40
>HYPA_ERWCT (Q6D7U0) Probable hydrogenase nickel incorporation protein hypA| Length = 117 Score = 33.1 bits (74), Expect = 0.31 Identities = 10/24 (41%), Positives = 16/24 (66%) Frame = +3 Query: 219 WCHECQQAVEEAMVEELKCPLCDG 290 WC++CQQ+V ++ +CP C G Sbjct: 72 WCYDCQQSVTLLTIQVRRCPQCQG 95
>TRPM2_HUMAN (O94759) Transient receptor potential cation channel subfamily M| member 2 (EC 3.6.1.13) (Long transient receptor potential channel 2) (LTrpC2) (LTrpC-2) (Transient receptor potential channel 7) (TrpC7) (Estrogen-responsive element-associated Length = 1503 Score = 32.3 bits (72), Expect = 0.54 Identities = 19/57 (33%), Positives = 26/57 (45%) Frame = +3 Query: 228 ECQQAVEEAMVEELKCPLCDGGFVEEMIGEHFEALASQLSEQGPTQWDPXGHPFEQP 398 EC VE + + + +C G+ E +H E + QG TQWDP H E P Sbjct: 71 ECVYFVESSKLSDAGKVVCQCGYTHE---QHLEEATKPHTFQG-TQWDPKKHVQEMP 123
>HYPA_ECOL6 (Q8FEL9) Protein hypA| Length = 116 Score = 30.0 bits (66), Expect = 2.7 Identities = 11/28 (39%), Positives = 14/28 (50%) Frame = +3 Query: 219 WCHECQQAVEEAMVEELKCPLCDGGFVE 302 WC CQQ V +CPLC G ++ Sbjct: 72 WCETCQQYVTLLTQRVRRCPLCHGDMLQ 99
>MK04_MOUSE (Q6P5G0) Mitogen-activated protein kinase 4 (EC 2.7.11.24)| (Extracellular signal-regulated kinase 4) (ERK-4) Length = 583 Score = 29.6 bits (65), Expect = 3.5 Identities = 16/54 (29%), Positives = 31/54 (57%) Frame = +2 Query: 65 QGGASTPSNPIQSTPQEKSQGSAASWFDFSPCSTLDRRKDLRYGRSCHHAVLVP 226 + G++ + +Q P++ SQ S+ + + S S+++R + YGRSC + V P Sbjct: 379 RAGSTPLAEDVQVDPRKDSQSSSERFLEQSH-SSMERAFEADYGRSCDYKVGSP 431
>Y1302_SYNEL (Q8DJC5) Maf-like protein tlr1302| Length = 198 Score = 29.3 bits (64), Expect = 4.5 Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 7/74 (9%) Frame = +3 Query: 114 RKARGQPLPGLTFHRVLRLIDGRIC-DMAEAAITRYWCHECQQAVEEAMVEELKCPLC-- 284 ++ RGQ LT H ++ L GR C ++ + + + A A E L C C Sbjct: 94 QQMRGQTADLLTGHALIDLAQGRTCVEVESTQVVFAQVSDAEIAAYVASGEPLACAGCFA 153 Query: 285 ----DGGFVEEMIG 314 G FVE+++G Sbjct: 154 LDGQGGAFVEKIVG 167
>HES6_MOUSE (Q9JHE6) Transcription cofactor HES-6 (Hairy and enhancer of split| 6) Length = 224 Score = 29.3 bits (64), Expect = 4.5 Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 6/74 (8%) Frame = +3 Query: 237 QAVEEAMVEEL------KCPLCDGGFVEEMIGEHFEALASQLSEQGPTQWDPXGHPFEQP 398 QA++ + EL PL +G ++++G+ +LA G + W P G P Sbjct: 115 QAIDATVSAELLNHLLESMPLREGSSFQDLLGD---SLAGLPGGSGRSSWPPGGSPESPL 171 Query: 399 GSPGDSDDEDNSDI 440 SP D+ SD+ Sbjct: 172 SSPPGPGDDLCSDL 185
>HYBF_ECO57 (Q8XBW1) Probable hydrogenase nickel incorporation protein hybF| (Hydrogenase-2 operon protein hybF) Length = 113 Score = 28.9 bits (63), Expect = 5.9 Identities = 11/24 (45%), Positives = 14/24 (58%) Frame = +3 Query: 219 WCHECQQAVEEAMVEELKCPLCDG 290 WC +C Q V E + +CPLC G Sbjct: 72 WCWDCSQVV-EVHQHDAQCPLCHG 94
>HSLO_CLOPE (Q8XJ60) 33 kDa chaperonin (Heat shock protein 33 homolog) (HSP33)| Length = 319 Score = 28.9 bits (63), Expect = 5.9 Identities = 26/94 (27%), Positives = 41/94 (43%), Gaps = 23/94 (24%) Frame = +3 Query: 141 GLTFHRVLRLI-DGRICDMAEAAITRYWCHECQQAVEEAMV----------------EEL 269 G T V+ I DG + E +Y C ++ VE A++ EEL Sbjct: 211 GKTIEEVIEFIFDGMDLKILEEETPKYKCDCSREKVERALLSIGYKDLKELYDEGKEEEL 270 Query: 270 KCPLCDGG--FVEEMIGEHFE----ALASQLSEQ 353 KC C+ F +E IG+ E ++A ++SE+ Sbjct: 271 KCHFCNKAYKFTKEDIGKLLEEKEKSIADEVSEE 304
>SYL_GEOSL (Q74AZ0) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA ligase)| (LeuRS) Length = 824 Score = 28.9 bits (63), Expect = 5.9 Identities = 13/56 (23%), Positives = 22/56 (39%) Frame = +3 Query: 219 WCHECQQAVEEAMVEELKCPLCDGGFVEEMIGEHFEALASQLSEQGPTQWDPXGHP 386 WC C+ + VE+ C CD ++ + + F + E W+ G P Sbjct: 158 WCPACETVLANEQVEDGCCWRCDSDVTQKELDQWFFRITRYAEELLEDTWNLPGWP 213
>HYBF_SHIFL (P0A704) Probable hydrogenase nickel incorporation protein hybF| (Hydrogenase-2 operon protein hybF) Length = 113 Score = 28.5 bits (62), Expect = 7.7 Identities = 11/24 (45%), Positives = 14/24 (58%) Frame = +3 Query: 219 WCHECQQAVEEAMVEELKCPLCDG 290 WC +C Q V E + +CPLC G Sbjct: 72 WCWDCSQVV-EIHQHDAQCPLCHG 94
>HYBF_ECOLI (P0A703) Probable hydrogenase nickel incorporation protein hybF| (Hydrogenase-2 operon protein hybF) Length = 113 Score = 28.5 bits (62), Expect = 7.7 Identities = 11/24 (45%), Positives = 14/24 (58%) Frame = +3 Query: 219 WCHECQQAVEEAMVEELKCPLCDG 290 WC +C Q V E + +CPLC G Sbjct: 72 WCWDCSQVV-EIHQHDAQCPLCHG 94
>HTPG_MYCPA (P61186) Chaperone protein htpG (Heat shock protein htpG) (High| temperature protein G) Length = 644 Score = 28.5 bits (62), Expect = 7.7 Identities = 23/80 (28%), Positives = 34/80 (42%) Frame = +3 Query: 141 GLTFHRVLRLIDGRICDMAEAAITRYWCHECQQAVEEAMVEELKCPLCDGGFVEEMIGEH 320 G+T V+ LI G + A + R E + A EA EEL G + M+ + Sbjct: 85 GMTRAEVVDLI-GTLAKSGTAEL-RQQLREAKNAQNEAASEELIGQFGIGFYSSFMVADK 142 Query: 321 FEALASQLSEQGPTQWDPXG 380 E L + E T+W+ G Sbjct: 143 VELLTRKAGESEATKWESSG 162 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 64,351,716 Number of Sequences: 219361 Number of extensions: 1262021 Number of successful extensions: 4035 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 3851 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4027 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2628831825 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
