No.
Definition
Score (bits)
E Value
1 ref|XM_473019.1| Oryza sativa (japonica cultivar-group), predic...
149
9e-33
2 ref|XM_473018.1| Oryza sativa (japonica cultivar-group), predic...
149
9e-33
3 dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D...
149
9e-33
4 dbj|AK073892.1| Oryza sativa (japonica cultivar-group) cDNA clon...
149
9e-33
5 dbj|AK072539.1| Oryza sativa (japonica cultivar-group) cDNA clon...
149
9e-33
6 dbj|AK063925.1| Oryza sativa (japonica cultivar-group) cDNA clon...
149
9e-33
7 emb|AL606629.3|OSJN00061 Oryza sativa genomic DNA, chromosome 4,...
149
9e-33
8 ref|XM_473020.1| Oryza sativa (japonica cultivar-group), predic...
145
1e-31
9 ref|XM_473015.1| Oryza sativa (japonica cultivar-group), predic...
82
2e-12
10 dbj|AK110895.1| Oryza sativa (japonica cultivar-group) cDNA clon...
82
2e-12
11 ref|NM_192744.1| Oryza sativa (japonica cultivar-group), predic...
80
7e-12
12 dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D...
80
7e-12
13 dbj|AP002844.2| Oryza sativa (japonica cultivar-group) genomic D...
80
7e-12
14 dbj|AP003314.3| Oryza sativa (japonica cultivar-group) genomic D...
80
7e-12
15 dbj|AK105921.1| Oryza sativa (japonica cultivar-group) cDNA clon...
80
7e-12
16 dbj|AK100501.1| Oryza sativa (japonica cultivar-group) cDNA clon...
80
7e-12
17 dbj|AK072500.1| Oryza sativa (japonica cultivar-group) cDNA clon...
80
7e-12
18 dbj|AK060682.1| Oryza sativa (japonica cultivar-group) cDNA clon...
80
7e-12
19 ref|XM_473021.1| Oryza sativa (japonica cultivar-group), predic...
60
6e-06
20 emb|CT737399.2| Pan troglodytes chromosome X clone CH251-213G08 ...
42
1.5
21 gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome
42
1.5
22 emb|AL034384.1|HSMTM0 Human chromosome Xq28, cosmid clones 7H3, ...
42
1.5
23 ref|XM_880667.1| PREDICTED: Bos taurus DNA (cytosine-5-)-methylt...
40
5.8
24 ref|XM_867643.1| PREDICTED: Bos taurus DNA (cytosine-5-)-methylt...
40
5.8
25 ref|XM_540110.2| PREDICTED: Canis familiaris similar to DNA cyto...
40
5.8
26 dbj|AP003516.3| Oryza sativa (japonica cultivar-group) genomic D...
40
5.8
27 dbj|AK107309.1| Oryza sativa (japonica cultivar-group) cDNA clon...
40
5.8
28 dbj|AK070057.1| Oryza sativa (japonica cultivar-group) cDNA clon...
40
5.8
29 emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid compl...
40
5.8
>dbj|AP008210.1 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
sequence
Length = 35498469
Score = 149 bits (75), Expect = 9e-33
Identities = 120/135 (88%)
Strand = Plus / Plus
Query: 238 acgcgataccgaactgggagctctccgggttcgtggagtacatcgagtcgggccacacgc 297
||||||||||| | |||||| |||||||||||||||||||||||| ||||||||| | ||
Sbjct: 24720382 acgcgataccgcagtgggagatctccgggttcgtggagtacatcgggtcgggccagatgc 24720441
Query: 298 aggaagacatgatcctgccggttccggtgggcgcgaacgccgtgcggctgggcaacgacg 357
||| |||||| |||||||||| |||| ||||||| |||||||||||||||||||||| |
Sbjct: 24720442 agggtgacatgctcctgccggtgccggagggcgcgtacgccgtgcggctgggcaacgagg 24720501
Query: 358 ccaccatccggcagc 372
|| |||||| |||||
Sbjct: 24720502 cctccatccagcagc 24720516
Score = 149 bits (75), Expect = 9e-33
Identities = 120/135 (88%)
Strand = Plus / Plus
Query: 238 acgcgataccgaactgggagctctccgggttcgtggagtacatcgagtcgggccacacgc 297
|||||||||| | |||||| |||||||||||||||||||||||| ||||||||| | ||
Sbjct: 24716666 acgcgatacctcagtgggagatctccgggttcgtggagtacatcgggtcgggccagaagc 24716725
Query: 298 aggaagacatgatcctgccggttccggtgggcgcgaacgccgtgcggctgggcaacgacg 357
||| ||||||| |||||||||| |||| ||||||| |||||||||||||||||||||| |
Sbjct: 24716726 agggagacatgctcctgccggtgccggagggcgcgtacgccgtgcggctgggcaacgagg 24716785
Query: 358 ccaccatccggcagc 372
|| |||||| |||||
Sbjct: 24716786 cctccatccagcagc 24716800
Score = 145 bits (73), Expect = 1e-31
Identities = 154/181 (85%)
Strand = Plus / Plus
Query: 191 cgggccagacaagtctcagatgaatggcccggtggtgacggggaagcacgcgataccgaa 250
|||||| |||||||| ||| |||| ||| ||||||||||||| |||| |||| |||
Sbjct: 24722540 cgggccggacaagtcccagctgaacggcacggtggtgacgggtcgatacgccatactgaa 24722599
Query: 251 ctgggagctctccgggttcgtggagtacatcgagtcgggccacacgcaggaagacatgat 310
||||||| |||| ||||||||||||||||||||||| || |||| | || | ||||||||
Sbjct: 24722600 ctgggagatctcggggttcgtggagtacatcgagtccgggcacagggagcaggacatgat 24722659
Query: 311 cctgccggttccggtgggcgcgaacgccgtgcggctgggcaacgacgccaccatccggca 370
|||| |||| |||| ||||||| ||||||||| |||||||||||||||||||||||||
Sbjct: 24722660 cctggcggtgccggagggcgcgcgcgccgtgcgattgggcaacgacgccaccatccggca 24722719
Query: 371 g 371
|
Sbjct: 24722720 g 24722720
Score = 135 bits (68), Expect = 1e-28
Identities = 113/128 (88%)
Strand = Plus / Plus
Query: 245 accgaactgggagctctccgggttcgtggagtacatcgagtcgggccacacgcaggaaga 304
||||||||||||| |||| ||||||||||||||||||| ||| || |||| | || | ||
Sbjct: 24727242 accgaactgggagatctctgggttcgtggagtacatcgggtccgggcacaaggagcagga 24727301
Query: 305 catgatcctgccggttccggtgggcgcgaacgccgtgcggctgggcaacgacgccaccat 364
|||||||||| |||| |||| ||||||| |||||||||| |||||||||||||| |||||
Sbjct: 24727302 catgatcctggcggtgccggagggcgcgtacgccgtgcgcctgggcaacgacgcaaccat 24727361
Query: 365 ccggcagc 372
||||||||
Sbjct: 24727362 ccggcagc 24727369
Score = 81.8 bits (41), Expect = 2e-12
Identities = 113/137 (82%)
Strand = Plus / Plus
Query: 238 acgcgataccgaactgggagctctccgggttcgtggagtacatcgagtcgggccacacgc 297
||||||| ||| ||||| || || |||||||||||||||||||| ||| || || | ||
Sbjct: 24702640 acgcgatcccgtactggaagatcaccgggttcgtggagtacatctcgtccgggcagaagc 24702699
Query: 298 aggaagacatgatcctgccggttccggtgggcgcgaacgccgtgcggctgggcaacgacg 357
||| |||||| | ||| |||| || | ||||||| |||||||||||||||||||||| |
Sbjct: 24702700 agggcgacatgctgctgacggtgccagagggcgcgcacgccgtgcggctgggcaacgagg 24702759
Query: 358 ccaccatccggcagcag 374
|| ||||| |||||||
Sbjct: 24702760 cctccatcgagcagcag 24702776
>emb|AL606629.3 |OSJN00061 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0091E11,
complete sequence
Length = 133856
Score = 149 bits (75), Expect = 9e-33
Identities = 120/135 (88%)
Strand = Plus / Plus
Query: 238 acgcgataccgaactgggagctctccgggttcgtggagtacatcgagtcgggccacacgc 297
||||||||||| | |||||| |||||||||||||||||||||||| ||||||||| | ||
Sbjct: 109905 acgcgataccgcagtgggagatctccgggttcgtggagtacatcgggtcgggccagatgc 109964
Query: 298 aggaagacatgatcctgccggttccggtgggcgcgaacgccgtgcggctgggcaacgacg 357
||| |||||| |||||||||| |||| ||||||| |||||||||||||||||||||| |
Sbjct: 109965 agggtgacatgctcctgccggtgccggagggcgcgtacgccgtgcggctgggcaacgagg 110024
Query: 358 ccaccatccggcagc 372
|| |||||| |||||
Sbjct: 110025 cctccatccagcagc 110039
Score = 149 bits (75), Expect = 9e-33
Identities = 120/135 (88%)
Strand = Plus / Plus
Query: 238 acgcgataccgaactgggagctctccgggttcgtggagtacatcgagtcgggccacacgc 297
|||||||||| | |||||| |||||||||||||||||||||||| ||||||||| | ||
Sbjct: 106189 acgcgatacctcagtgggagatctccgggttcgtggagtacatcgggtcgggccagaagc 106248
Query: 298 aggaagacatgatcctgccggttccggtgggcgcgaacgccgtgcggctgggcaacgacg 357
||| ||||||| |||||||||| |||| ||||||| |||||||||||||||||||||| |
Sbjct: 106249 agggagacatgctcctgccggtgccggagggcgcgtacgccgtgcggctgggcaacgagg 106308
Query: 358 ccaccatccggcagc 372
|| |||||| |||||
Sbjct: 106309 cctccatccagcagc 106323
Score = 145 bits (73), Expect = 1e-31
Identities = 154/181 (85%)
Strand = Plus / Plus
Query: 191 cgggccagacaagtctcagatgaatggcccggtggtgacggggaagcacgcgataccgaa 250
|||||| |||||||| ||| |||| ||| ||||||||||||| |||| |||| |||
Sbjct: 112063 cgggccggacaagtcccagctgaacggcacggtggtgacgggtcgatacgccatactgaa 112122
Query: 251 ctgggagctctccgggttcgtggagtacatcgagtcgggccacacgcaggaagacatgat 310
||||||| |||| ||||||||||||||||||||||| || |||| | || | ||||||||
Sbjct: 112123 ctgggagatctcggggttcgtggagtacatcgagtccgggcacagggagcaggacatgat 112182
Query: 311 cctgccggttccggtgggcgcgaacgccgtgcggctgggcaacgacgccaccatccggca 370
|||| |||| |||| ||||||| ||||||||| |||||||||||||||||||||||||
Sbjct: 112183 cctggcggtgccggagggcgcgcgcgccgtgcgattgggcaacgacgccaccatccggca 112242
Query: 371 g 371
|
Sbjct: 112243 g 112243
Score = 135 bits (68), Expect = 1e-28
Identities = 113/128 (88%)
Strand = Plus / Plus
Query: 245 accgaactgggagctctccgggttcgtggagtacatcgagtcgggccacacgcaggaaga 304
||||||||||||| |||| ||||||||||||||||||| ||| || |||| | || | ||
Sbjct: 116765 accgaactgggagatctctgggttcgtggagtacatcgggtccgggcacaaggagcagga 116824
Query: 305 catgatcctgccggttccggtgggcgcgaacgccgtgcggctgggcaacgacgccaccat 364
|||||||||| |||| |||| ||||||| |||||||||| |||||||||||||| |||||
Sbjct: 116825 catgatcctggcggtgccggagggcgcgtacgccgtgcgcctgggcaacgacgcaaccat 116884
Query: 365 ccggcagc 372
||||||||
Sbjct: 116885 ccggcagc 116892
Score = 81.8 bits (41), Expect = 2e-12
Identities = 113/137 (82%)
Strand = Plus / Plus
Query: 238 acgcgataccgaactgggagctctccgggttcgtggagtacatcgagtcgggccacacgc 297
||||||| ||| ||||| || || |||||||||||||||||||| ||| || || | ||
Sbjct: 92163 acgcgatcccgtactggaagatcaccgggttcgtggagtacatctcgtccgggcagaagc 92222
Query: 298 aggaagacatgatcctgccggttccggtgggcgcgaacgccgtgcggctgggcaacgacg 357
||| |||||| | ||| |||| || | ||||||| |||||||||||||||||||||| |
Sbjct: 92223 agggcgacatgctgctgacggtgccagagggcgcgcacgccgtgcggctgggcaacgagg 92282
Query: 358 ccaccatccggcagcag 374
|| ||||| |||||||
Sbjct: 92283 cctccatcgagcagcag 92299
>emb|AL034384.1 |HSMTM0 Human chromosome Xq28, cosmid clones 7H3, 14D7, C1230, 11E7, F1096,
A12197, 12G8, A09100; complete sequence bases 1..217657
Length = 217657
Score = 42.1 bits (21), Expect = 1.5
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 11 ccgtagcttcgagtaaagctc 31
|||||||||||||||||||||
Sbjct: 39915 ccgtagcttcgagtaaagctc 39895
>emb|AL646053.1 | Ralstonia solanacearum GMI1000 megaplasmid complete sequence
Length = 2094509
Score = 40.1 bits (20), Expect = 5.8
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 335 cgccgtgcggctgggcaacgacgccacc 362
|||||||||||||||| ||| |||||||
Sbjct: 1169352 cgccgtgcggctgggcgacgtcgccacc 1169379
Database: nt
Posted date: May 29, 2006 11:10 AM
Number of letters in database: 3,984,495,279
Number of sequences in database: 917,343
Database: /shigen/export/home/twatanab/db/nt/nt.01
Posted date: May 29, 2006 11:16 AM
Number of letters in database: 3,988,174,986
Number of sequences in database: 835,257
Database: /shigen/export/home/twatanab/db/nt/nt.02
Posted date: May 29, 2006 11:21 AM
Number of letters in database: 3,991,246,324
Number of sequences in database: 771,481
Database: /shigen/export/home/twatanab/db/nt/nt.03
Posted date: May 29, 2006 11:27 AM
Number of letters in database: 3,990,718,311
Number of sequences in database: 977,174
Database: /shigen/export/home/twatanab/db/nt/nt.04
Posted date: May 29, 2006 11:29 AM
Number of letters in database: 1,278,410,368
Number of sequences in database: 400,813
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,378,109
Number of Sequences: 3902068
Number of extensions: 2378109
Number of successful extensions: 41979
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 41832
Number of HSP's gapped (non-prelim): 140
length of query: 433
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 411
effective length of database: 17,147,199,772
effective search space: 7047499106292
effective search space used: 7047499106292
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)