ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart53f06 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_196501.1| Oryza sativa (japonica cultivar-group) putative class III chitinase (OSJNBa0032I20.12), mRNA Length = 867 Score = 218 bits (110), Expect = 1e-53 Identities = 217/253 (85%) Strand = Plus / Plus Query: 204 acgccgacgccgaccaacggcgcgttcagcgcgttctgggacacggcgagcctgtcccgc 263 |||||| ||||||||||||||| |||| ||| |||||||||||| | |||||||| Sbjct: 145 acgccggcgccgaccaacggcgtgttctcgccgtactgggacacggccaacctgtccccg 204 Query: 264 gccgacgtggccgccatcaaggccgcgcacccgaacgtgagcgtcatggtcggcctcggc 323 |||||||| |||||| ||||||| |||||||| ||||| ||||||||||||||||||||| Sbjct: 205 gccgacgtcgccgccgtcaaggcggcgcaccccaacgtcagcgtcatggtcggcctcggc 264 Query: 324 ggcgacagcgtgcaggacatcgtcaaggtctccttcgcgcccaactccgtcgactcgtgg 383 ||||||||||||||||||| || |||||||| |||| | || | |||||||||||||||| Sbjct: 265 ggcgacagcgtgcaggacaccgccaaggtcttcttctccccgacctccgtcgactcgtgg 324 Query: 384 gtggccaacgccgtggcgtcgctctcgcgcctcatcaacgagtacggnctcgacggggtg 443 |||||||||||||| || || |||| || ||||| ||| ||||| |||||||| || Sbjct: 325 gtggccaacgccgtcgcctccgtctccggcatcatcgacgcctacggcctcgacggcgtc 384 Query: 444 gacgtcgactacg 456 ||||||||||||| Sbjct: 385 gacgtcgactacg 397 Score = 163 bits (82), Expect = 6e-37 Identities = 115/126 (91%) Strand = Plus / Plus Query: 60 atgacgaacgggtacctgttccgggagtacatcggcgcgcagttcaccggcgtccggttc 119 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| Sbjct: 1 atgacgaacgggtacctgttccgggagtacatcggcgcgcagttcaccggagtccgcttc 60 Query: 120 tccgacgtgcccgtcaacaccggcgtcagcttccactacatcctcgccttcgccatcgac 179 |||||||||||| ||||| | | |||||||| ||| ||||||| |||||||||||||| Sbjct: 61 tccgacgtgcccatcaacccaaacctcagcttcaacttcatcctctccttcgccatcgac 120 Query: 180 tacacg 185 |||||| Sbjct: 121 tacacg 126
>gb|AC016780.6| Genomic Sequence For Oryza sativa (japonica cultivar-group) cultivar Nipponbare Clone OSJNBa0061K21 From Chromosome 10, complete sequence Length = 112721 Score = 218 bits (110), Expect = 1e-53 Identities = 217/253 (85%) Strand = Plus / Plus Query: 204 acgccgacgccgaccaacggcgcgttcagcgcgttctgggacacggcgagcctgtcccgc 263 |||||| ||||||||||||||| |||| ||| |||||||||||| | |||||||| Sbjct: 28157 acgccggcgccgaccaacggcgtgttctcgccgtactgggacacggccaacctgtccccg 28216 Query: 264 gccgacgtggccgccatcaaggccgcgcacccgaacgtgagcgtcatggtcggcctcggc 323 |||||||| |||||| ||||||| |||||||| ||||| ||||||||||||||||||||| Sbjct: 28217 gccgacgtcgccgccgtcaaggcggcgcaccccaacgtcagcgtcatggtcggcctcggc 28276 Query: 324 ggcgacagcgtgcaggacatcgtcaaggtctccttcgcgcccaactccgtcgactcgtgg 383 ||||||||||||||||||| || |||||||| |||| | || | |||||||||||||||| Sbjct: 28277 ggcgacagcgtgcaggacaccgccaaggtcttcttctccccgacctccgtcgactcgtgg 28336 Query: 384 gtggccaacgccgtggcgtcgctctcgcgcctcatcaacgagtacggnctcgacggggtg 443 |||||||||||||| || || |||| || ||||| ||| ||||| |||||||| || Sbjct: 28337 gtggccaacgccgtcgcctccgtctccggcatcatcgacgcctacggcctcgacggcgtc 28396 Query: 444 gacgtcgactacg 456 ||||||||||||| Sbjct: 28397 gacgtcgactacg 28409 Score = 170 bits (86), Expect = 3e-39 Identities = 110/118 (93%) Strand = Plus / Plus Query: 65 gaacgggtacctgttccgggagtacatcggcgcgcagttcaccggcgtccggttctccga 124 |||||| ||| ||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct: 15572 gaacggctacttgttccgggagtacatcggcgcgcagttcaccggcgtgcgcttctccga 15631 Query: 125 cgtgcccgtcaacaccggcgtcagcttccactacatcctcgccttcgccatcgactac 182 ||||||||||||| | ||| |||||||||||| ||||||||||||||||||||||||| Sbjct: 15632 cgtgcccgtcaacccgggcctcagcttccacttcatcctcgccttcgccatcgactac 15689 Score = 168 bits (85), Expect = 1e-38 Identities = 118/129 (91%) Strand = Plus / Plus Query: 57 gccatgacgaacgggtacctgttccgggagtacatcggcgcgcagttcaccggcgtccgg 116 ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 28010 gccatgacgaacgggtacctgttccgggagtacatcggcgcgcagttcaccggagtccgc 28069 Query: 117 ttctccgacgtgcccgtcaacaccggcgtcagcttccactacatcctcgccttcgccatc 176 ||||||||||||||| ||||| | | |||||||| ||| ||||||| ||||||||||| Sbjct: 28070 ttctccgacgtgcccatcaacccaaacctcagcttcaacttcatcctctccttcgccatc 28129 Query: 177 gactacacg 185 ||||||||| Sbjct: 28130 gactacacg 28138 Score = 60.0 bits (30), Expect = 7e-06 Identities = 93/114 (81%) Strand = Plus / Plus Query: 217 ccaacggcgcgttcagcgcgttctgggacacggcgagcctgtcccgcgccgacgtggccg 276 ||||||||| |||| | ||| |||||||||||| | |||||||| |||| ||| |||| Sbjct: 15724 ccaacggcgtgttcgccccgtactgggacacggccaacctgtccccggccgccgtcgccg 15783 Query: 277 ccatcaaggccgcgcacccgaacgtgagcgtcatggtcggcctcggcggcgaca 330 | |||||| |||||||| ||| | |||||||| ||| |||||||||||||| Sbjct: 15784 cggccaaggcggcgcaccccaacctcagcgtcatcctcgccctcggcggcgaca 15837 Score = 44.1 bits (22), Expect = 0.39 Identities = 39/45 (86%) Strand = Plus / Plus Query: 412 gcctcatcaacgagtacggnctcgacggggtggacgtcgactacg 456 |||||||| ||| ||||| |||||||| || ||||||||||||| Sbjct: 15925 gcctcatcgacgcctacggcctcgacggcgtcgacgtcgactacg 15969
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 218 bits (110), Expect = 1e-53 Identities = 217/253 (85%) Strand = Plus / Plus Query: 204 acgccgacgccgaccaacggcgcgttcagcgcgttctgggacacggcgagcctgtcccgc 263 |||||| ||||||||||||||| |||| ||| |||||||||||| | |||||||| Sbjct: 14088519 acgccggcgccgaccaacggcgtgttctcgccgtactgggacacggccaacctgtccccg 14088578 Query: 264 gccgacgtggccgccatcaaggccgcgcacccgaacgtgagcgtcatggtcggcctcggc 323 |||||||| |||||| ||||||| |||||||| ||||| ||||||||||||||||||||| Sbjct: 14088579 gccgacgtcgccgccgtcaaggcggcgcaccccaacgtcagcgtcatggtcggcctcggc 14088638 Query: 324 ggcgacagcgtgcaggacatcgtcaaggtctccttcgcgcccaactccgtcgactcgtgg 383 ||||||||||||||||||| || |||||||| |||| | || | |||||||||||||||| Sbjct: 14088639 ggcgacagcgtgcaggacaccgccaaggtcttcttctccccgacctccgtcgactcgtgg 14088698 Query: 384 gtggccaacgccgtggcgtcgctctcgcgcctcatcaacgagtacggnctcgacggggtg 443 |||||||||||||| || || |||| || ||||| ||| ||||| |||||||| || Sbjct: 14088699 gtggccaacgccgtcgcctccgtctccggcatcatcgacgcctacggcctcgacggcgtc 14088758 Query: 444 gacgtcgactacg 456 ||||||||||||| Sbjct: 14088759 gacgtcgactacg 14088771 Score = 170 bits (86), Expect = 3e-39 Identities = 110/118 (93%) Strand = Plus / Plus Query: 65 gaacgggtacctgttccgggagtacatcggcgcgcagttcaccggcgtccggttctccga 124 |||||| ||| ||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct: 14075934 gaacggctacttgttccgggagtacatcggcgcgcagttcaccggcgtgcgcttctccga 14075993 Query: 125 cgtgcccgtcaacaccggcgtcagcttccactacatcctcgccttcgccatcgactac 182 ||||||||||||| | ||| |||||||||||| ||||||||||||||||||||||||| Sbjct: 14075994 cgtgcccgtcaacccgggcctcagcttccacttcatcctcgccttcgccatcgactac 14076051 Score = 168 bits (85), Expect = 1e-38 Identities = 118/129 (91%) Strand = Plus / Plus Query: 57 gccatgacgaacgggtacctgttccgggagtacatcggcgcgcagttcaccggcgtccgg 116 ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 14088372 gccatgacgaacgggtacctgttccgggagtacatcggcgcgcagttcaccggagtccgc 14088431 Query: 117 ttctccgacgtgcccgtcaacaccggcgtcagcttccactacatcctcgccttcgccatc 176 ||||||||||||||| ||||| | | |||||||| ||| ||||||| ||||||||||| Sbjct: 14088432 ttctccgacgtgcccatcaacccaaacctcagcttcaacttcatcctctccttcgccatc 14088491 Query: 177 gactacacg 185 ||||||||| Sbjct: 14088492 gactacacg 14088500 Score = 60.0 bits (30), Expect = 7e-06 Identities = 93/114 (81%) Strand = Plus / Plus Query: 217 ccaacggcgcgttcagcgcgttctgggacacggcgagcctgtcccgcgccgacgtggccg 276 ||||||||| |||| | ||| |||||||||||| | |||||||| |||| ||| |||| Sbjct: 14076086 ccaacggcgtgttcgccccgtactgggacacggccaacctgtccccggccgccgtcgccg 14076145 Query: 277 ccatcaaggccgcgcacccgaacgtgagcgtcatggtcggcctcggcggcgaca 330 | |||||| |||||||| ||| | |||||||| ||| |||||||||||||| Sbjct: 14076146 cggccaaggcggcgcaccccaacctcagcgtcatcctcgccctcggcggcgaca 14076199 Score = 44.1 bits (22), Expect = 0.39 Identities = 39/45 (86%) Strand = Plus / Plus Query: 412 gcctcatcaacgagtacggnctcgacggggtggacgtcgactacg 456 |||||||| ||| ||||| |||||||| || ||||||||||||| Sbjct: 14076287 gcctcatcgacgcctacggcctcgacggcgtcgacgtcgactacg 14076331
>gb|AF229187.1|AF229187 Oryza sativa subsp. japonica BAC clone nbxb0032I20, complete sequence Length = 144651 Score = 218 bits (110), Expect = 1e-53 Identities = 217/253 (85%) Strand = Plus / Plus Query: 204 acgccgacgccgaccaacggcgcgttcagcgcgttctgggacacggcgagcctgtcccgc 263 |||||| ||||||||||||||| |||| ||| |||||||||||| | |||||||| Sbjct: 104648 acgccggcgccgaccaacggcgtgttctcgccgtactgggacacggccaacctgtccccg 104707 Query: 264 gccgacgtggccgccatcaaggccgcgcacccgaacgtgagcgtcatggtcggcctcggc 323 |||||||| |||||| ||||||| |||||||| ||||| ||||||||||||||||||||| Sbjct: 104708 gccgacgtcgccgccgtcaaggcggcgcaccccaacgtcagcgtcatggtcggcctcggc 104767 Query: 324 ggcgacagcgtgcaggacatcgtcaaggtctccttcgcgcccaactccgtcgactcgtgg 383 ||||||||||||||||||| || |||||||| |||| | || | |||||||||||||||| Sbjct: 104768 ggcgacagcgtgcaggacaccgccaaggtcttcttctccccgacctccgtcgactcgtgg 104827 Query: 384 gtggccaacgccgtggcgtcgctctcgcgcctcatcaacgagtacggnctcgacggggtg 443 |||||||||||||| || || |||| || ||||| ||| ||||| |||||||| || Sbjct: 104828 gtggccaacgccgtcgcctccgtctccggcatcatcgacgcctacggcctcgacggcgtc 104887 Query: 444 gacgtcgactacg 456 ||||||||||||| Sbjct: 104888 gacgtcgactacg 104900 Score = 170 bits (86), Expect = 3e-39 Identities = 110/118 (93%) Strand = Plus / Plus Query: 65 gaacgggtacctgttccgggagtacatcggcgcgcagttcaccggcgtccggttctccga 124 |||||| ||| ||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct: 92063 gaacggctacttgttccgggagtacatcggcgcgcagttcaccggcgtgcgcttctccga 92122 Query: 125 cgtgcccgtcaacaccggcgtcagcttccactacatcctcgccttcgccatcgactac 182 ||||||||||||| | ||| |||||||||||| ||||||||||||||||||||||||| Sbjct: 92123 cgtgcccgtcaacccgggcctcagcttccacttcatcctcgccttcgccatcgactac 92180 Score = 168 bits (85), Expect = 1e-38 Identities = 118/129 (91%) Strand = Plus / Plus Query: 57 gccatgacgaacgggtacctgttccgggagtacatcggcgcgcagttcaccggcgtccgg 116 ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 104501 gccatgacgaacgggtacctgttccgggagtacatcggcgcgcagttcaccggagtccgc 104560 Query: 117 ttctccgacgtgcccgtcaacaccggcgtcagcttccactacatcctcgccttcgccatc 176 ||||||||||||||| ||||| | | |||||||| ||| ||||||| ||||||||||| Sbjct: 104561 ttctccgacgtgcccatcaacccaaacctcagcttcaacttcatcctctccttcgccatc 104620 Query: 177 gactacacg 185 ||||||||| Sbjct: 104621 gactacacg 104629 Score = 60.0 bits (30), Expect = 7e-06 Identities = 93/114 (81%) Strand = Plus / Plus Query: 217 ccaacggcgcgttcagcgcgttctgggacacggcgagcctgtcccgcgccgacgtggccg 276 ||||||||| |||| | ||| |||||||||||| | |||||||| |||| ||| |||| Sbjct: 92215 ccaacggcgtgttcgccccgtactgggacacggccaacctgtccccggccgccgtcgccg 92274 Query: 277 ccatcaaggccgcgcacccgaacgtgagcgtcatggtcggcctcggcggcgaca 330 | |||||| |||||||| ||| | |||||||| ||| |||||||||||||| Sbjct: 92275 cggccaaggcggcgcaccccaacctcagcgtcatcctcgccctcggcggcgaca 92328 Score = 44.1 bits (22), Expect = 0.39 Identities = 39/45 (86%) Strand = Plus / Plus Query: 412 gcctcatcaacgagtacggnctcgacggggtggacgtcgactacg 456 |||||||| ||| ||||| |||||||| || ||||||||||||| Sbjct: 92416 gcctcatcgacgcctacggcctcgacggcgtcgacgtcgactacg 92460
>dbj|AK104292.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-007-F06, full insert sequence Length = 1108 Score = 218 bits (110), Expect = 1e-53 Identities = 217/253 (85%) Strand = Plus / Plus Query: 204 acgccgacgccgaccaacggcgcgttcagcgcgttctgggacacggcgagcctgtcccgc 263 |||||| ||||||||||||||| |||| ||| |||||||||||| | |||||||| Sbjct: 164 acgccggcgccgaccaacggcgtgttctcgccgtactgggacacggccaacctgtccccg 223 Query: 264 gccgacgtggccgccatcaaggccgcgcacccgaacgtgagcgtcatggtcggcctcggc 323 |||||||| |||||| ||||||| |||||||| ||||| ||||||||||||||||||||| Sbjct: 224 gccgacgtcgccgccgtcaaggcggcgcaccccaacgtcagcgtcatggtcggcctcggc 283 Query: 324 ggcgacagcgtgcaggacatcgtcaaggtctccttcgcgcccaactccgtcgactcgtgg 383 ||||||||||||||||||| || |||||||| |||| | || | |||||||||||||||| Sbjct: 284 ggcgacagcgtgcaggacaccgccaaggtcttcttctccccgacctccgtcgactcgtgg 343 Query: 384 gtggccaacgccgtggcgtcgctctcgcgcctcatcaacgagtacggnctcgacggggtg 443 |||||||||||||| || || |||| || ||||| ||| ||||| |||||||| || Sbjct: 344 gtggccaacgccgtcgcctccgtctccggcatcatcgacgcctacggcctcgacggcgtc 403 Query: 444 gacgtcgactacg 456 ||||||||||||| Sbjct: 404 gacgtcgactacg 416 Score = 168 bits (85), Expect = 1e-38 Identities = 118/129 (91%) Strand = Plus / Plus Query: 57 gccatgacgaacgggtacctgttccgggagtacatcggcgcgcagttcaccggcgtccgg 116 ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 17 gccatgacgaacgggtacctgttccgggagtacatcggcgcgcagttcaccggagtccgc 76 Query: 117 ttctccgacgtgcccgtcaacaccggcgtcagcttccactacatcctcgccttcgccatc 176 ||||||||||||||| ||||| | | |||||||| ||| ||||||| ||||||||||| Sbjct: 77 ttctccgacgtgcccatcaacccaaacctcagcttcaacttcatcctctccttcgccatc 136 Query: 177 gactacacg 185 ||||||||| Sbjct: 137 gactacacg 145
>dbj|AK104222.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-306-E05, full insert sequence Length = 1069 Score = 218 bits (110), Expect = 1e-53 Identities = 217/253 (85%) Strand = Plus / Plus Query: 204 acgccgacgccgaccaacggcgcgttcagcgcgttctgggacacggcgagcctgtcccgc 263 |||||| ||||||||||||||| |||| ||| |||||||||||| | |||||||| Sbjct: 169 acgccggcgccgaccaacggcgtgttctcgccgtactgggacacggccaacctgtccccg 228 Query: 264 gccgacgtggccgccatcaaggccgcgcacccgaacgtgagcgtcatggtcggcctcggc 323 |||||||| |||||| ||||||| |||||||| ||||| ||||||||||||||||||||| Sbjct: 229 gccgacgtcgccgccgtcaaggcggcgcaccccaacgtcagcgtcatggtcggcctcggc 288 Query: 324 ggcgacagcgtgcaggacatcgtcaaggtctccttcgcgcccaactccgtcgactcgtgg 383 ||||||||||||||||||| || |||||||| |||| | || | |||||||||||||||| Sbjct: 289 ggcgacagcgtgcaggacaccgccaaggtcttcttctccccgacctccgtcgactcgtgg 348 Query: 384 gtggccaacgccgtggcgtcgctctcgcgcctcatcaacgagtacggnctcgacggggtg 443 |||||||||||||| || || |||| || ||||| ||| ||||| |||||||| || Sbjct: 349 gtggccaacgccgtcgcctccgtctccggcatcatcgacgcctacggcctcgacggcgtc 408 Query: 444 gacgtcgactacg 456 ||||||||||||| Sbjct: 409 gacgtcgactacg 421 Score = 168 bits (85), Expect = 1e-38 Identities = 118/129 (91%) Strand = Plus / Plus Query: 57 gccatgacgaacgggtacctgttccgggagtacatcggcgcgcagttcaccggcgtccgg 116 ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 22 gccatgacgaacgggtacctgttccgggagtacatcggcgcgcagttcaccggagtccgc 81 Query: 117 ttctccgacgtgcccgtcaacaccggcgtcagcttccactacatcctcgccttcgccatc 176 ||||||||||||||| ||||| | | |||||||| ||| ||||||| ||||||||||| Sbjct: 82 ttctccgacgtgcccatcaacccaaacctcagcttcaacttcatcctctccttcgccatc 141 Query: 177 gactacacg 185 ||||||||| Sbjct: 142 gactacacg 150
>dbj|AK099101.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023025I19, full insert sequence Length = 1068 Score = 218 bits (110), Expect = 1e-53 Identities = 217/253 (85%) Strand = Plus / Plus Query: 204 acgccgacgccgaccaacggcgcgttcagcgcgttctgggacacggcgagcctgtcccgc 263 |||||| ||||||||||||||| |||| ||| |||||||||||| | |||||||| Sbjct: 168 acgccggcgccgaccaacggcgtgttctcgccgtactgggacacggccaacctgtccccg 227 Query: 264 gccgacgtggccgccatcaaggccgcgcacccgaacgtgagcgtcatggtcggcctcggc 323 |||||||| |||||| ||||||| |||||||| ||||| ||||||||||||||||||||| Sbjct: 228 gccgacgtcgccgccgtcaaggcggcgcaccccaacgtcagcgtcatggtcggcctcggc 287 Query: 324 ggcgacagcgtgcaggacatcgtcaaggtctccttcgcgcccaactccgtcgactcgtgg 383 ||||||||||||||||||| || |||||||| |||| | || | |||||||||||||||| Sbjct: 288 ggcgacagcgtgcaggacaccgccaaggtcttcttctccccgacctccgtcgactcgtgg 347 Query: 384 gtggccaacgccgtggcgtcgctctcgcgcctcatcaacgagtacggnctcgacggggtg 443 |||||||||||||| || || |||| || ||||| ||| ||||| |||||||| || Sbjct: 348 gtggccaacgccgtcgcctccgtctccggcatcatcgacgcctacggcctcgacggcgtc 407 Query: 444 gacgtcgactacg 456 ||||||||||||| Sbjct: 408 gacgtcgactacg 420 Score = 168 bits (85), Expect = 1e-38 Identities = 118/129 (91%) Strand = Plus / Plus Query: 57 gccatgacgaacgggtacctgttccgggagtacatcggcgcgcagttcaccggcgtccgg 116 ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 21 gccatgacgaacgggtacctgttccgggagtacatcggcgcgcagttcaccggagtccgc 80 Query: 117 ttctccgacgtgcccgtcaacaccggcgtcagcttccactacatcctcgccttcgccatc 176 ||||||||||||||| ||||| | | |||||||| ||| ||||||| ||||||||||| Sbjct: 81 ttctccgacgtgcccatcaacccaaacctcagcttcaacttcatcctctccttcgccatc 140 Query: 177 gactacacg 185 ||||||||| Sbjct: 141 gactacacg 149
>dbj|AK060033.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-303-H08, full insert sequence Length = 1134 Score = 218 bits (110), Expect = 1e-53 Identities = 217/253 (85%) Strand = Plus / Plus Query: 204 acgccgacgccgaccaacggcgcgttcagcgcgttctgggacacggcgagcctgtcccgc 263 |||||| ||||||||||||||| |||| ||| |||||||||||| | |||||||| Sbjct: 169 acgccggcgccgaccaacggcgtgttctcgccgtactgggacacggccaacctgtccccg 228 Query: 264 gccgacgtggccgccatcaaggccgcgcacccgaacgtgagcgtcatggtcggcctcggc 323 |||||||| |||||| ||||||| |||||||| ||||| ||||||||||||||||||||| Sbjct: 229 gccgacgtcgccgccgtcaaggcggcgcaccccaacgtcagcgtcatggtcggcctcggc 288 Query: 324 ggcgacagcgtgcaggacatcgtcaaggtctccttcgcgcccaactccgtcgactcgtgg 383 ||||||||||||||||||| || |||||||| |||| | || | |||||||||||||||| Sbjct: 289 ggcgacagcgtgcaggacaccgccaaggtcttcttctccccgacctccgtcgactcgtgg 348 Query: 384 gtggccaacgccgtggcgtcgctctcgcgcctcatcaacgagtacggnctcgacggggtg 443 |||||||||||||| || || |||| || ||||| ||| ||||| |||||||| || Sbjct: 349 gtggccaacgccgtcgcctccgtctccggcatcatcgacgcctacggcctcgacggcgtc 408 Query: 444 gacgtcgactacg 456 ||||||||||||| Sbjct: 409 gacgtcgactacg 421 Score = 168 bits (85), Expect = 1e-38 Identities = 118/129 (91%) Strand = Plus / Plus Query: 57 gccatgacgaacgggtacctgttccgggagtacatcggcgcgcagttcaccggcgtccgg 116 ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 22 gccatgacgaacgggtacctgttccgggagtacatcggcgcgcagttcaccggagtccgc 81 Query: 117 ttctccgacgtgcccgtcaacaccggcgtcagcttccactacatcctcgccttcgccatc 176 ||||||||||||||| ||||| | | |||||||| ||| ||||||| ||||||||||| Sbjct: 82 ttctccgacgtgcccatcaacccaaacctcagcttcaacttcatcctctccttcgccatc 141 Query: 177 gactacacg 185 ||||||||| Sbjct: 142 gactacacg 150
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 218 bits (110), Expect = 1e-53 Identities = 217/253 (85%) Strand = Plus / Plus Query: 204 acgccgacgccgaccaacggcgcgttcagcgcgttctgggacacggcgagcctgtcccgc 263 |||||| ||||||||||||||| |||| ||| |||||||||||| | |||||||| Sbjct: 14096761 acgccggcgccgaccaacggcgtgttctcgccgtactgggacacggccaacctgtccccg 14096820 Query: 264 gccgacgtggccgccatcaaggccgcgcacccgaacgtgagcgtcatggtcggcctcggc 323 |||||||| |||||| ||||||| |||||||| ||||| ||||||||||||||||||||| Sbjct: 14096821 gccgacgtcgccgccgtcaaggcggcgcaccccaacgtcagcgtcatggtcggcctcggc 14096880 Query: 324 ggcgacagcgtgcaggacatcgtcaaggtctccttcgcgcccaactccgtcgactcgtgg 383 ||||||||||||||||||| || |||||||| |||| | || | |||||||||||||||| Sbjct: 14096881 ggcgacagcgtgcaggacaccgccaaggtcttcttctccccgacctccgtcgactcgtgg 14096940 Query: 384 gtggccaacgccgtggcgtcgctctcgcgcctcatcaacgagtacggnctcgacggggtg 443 |||||||||||||| || || |||| || ||||| ||| ||||| |||||||| || Sbjct: 14096941 gtggccaacgccgtcgcctccgtctccggcatcatcgacgcctacggcctcgacggcgtc 14097000 Query: 444 gacgtcgactacg 456 ||||||||||||| Sbjct: 14097001 gacgtcgactacg 14097013 Score = 170 bits (86), Expect = 3e-39 Identities = 110/118 (93%) Strand = Plus / Plus Query: 65 gaacgggtacctgttccgggagtacatcggcgcgcagttcaccggcgtccggttctccga 124 |||||| ||| ||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct: 14084176 gaacggctacttgttccgggagtacatcggcgcgcagttcaccggcgtgcgcttctccga 14084235 Query: 125 cgtgcccgtcaacaccggcgtcagcttccactacatcctcgccttcgccatcgactac 182 ||||||||||||| | ||| |||||||||||| ||||||||||||||||||||||||| Sbjct: 14084236 cgtgcccgtcaacccgggcctcagcttccacttcatcctcgccttcgccatcgactac 14084293 Score = 168 bits (85), Expect = 1e-38 Identities = 118/129 (91%) Strand = Plus / Plus Query: 57 gccatgacgaacgggtacctgttccgggagtacatcggcgcgcagttcaccggcgtccgg 116 ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 14096614 gccatgacgaacgggtacctgttccgggagtacatcggcgcgcagttcaccggagtccgc 14096673 Query: 117 ttctccgacgtgcccgtcaacaccggcgtcagcttccactacatcctcgccttcgccatc 176 ||||||||||||||| ||||| | | |||||||| ||| ||||||| ||||||||||| Sbjct: 14096674 ttctccgacgtgcccatcaacccaaacctcagcttcaacttcatcctctccttcgccatc 14096733 Query: 177 gactacacg 185 ||||||||| Sbjct: 14096734 gactacacg 14096742 Score = 60.0 bits (30), Expect = 7e-06 Identities = 93/114 (81%) Strand = Plus / Plus Query: 217 ccaacggcgcgttcagcgcgttctgggacacggcgagcctgtcccgcgccgacgtggccg 276 ||||||||| |||| | ||| |||||||||||| | |||||||| |||| ||| |||| Sbjct: 14084328 ccaacggcgtgttcgccccgtactgggacacggccaacctgtccccggccgccgtcgccg 14084387 Query: 277 ccatcaaggccgcgcacccgaacgtgagcgtcatggtcggcctcggcggcgaca 330 | |||||| |||||||| ||| | |||||||| ||| |||||||||||||| Sbjct: 14084388 cggccaaggcggcgcaccccaacctcagcgtcatcctcgccctcggcggcgaca 14084441 Score = 44.1 bits (22), Expect = 0.39 Identities = 39/45 (86%) Strand = Plus / Plus Query: 412 gcctcatcaacgagtacggnctcgacggggtggacgtcgactacg 456 |||||||| ||| ||||| |||||||| || ||||||||||||| Sbjct: 14084529 gcctcatcgacgcctacggcctcgacggcgtcgacgtcgactacg 14084573
>dbj|AK119555.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-208-E12, full insert sequence Length = 1089 Score = 210 bits (106), Expect = 3e-51 Identities = 216/253 (85%) Strand = Plus / Plus Query: 204 acgccgacgccgaccaacggcgcgttcagcgcgttctgggacacggcgagcctgtcccgc 263 |||||| ||||||||||||| | |||| ||| |||||||||||| | |||||||| Sbjct: 169 acgccggcgccgaccaacggtgtgttctcgccgtactgggacacggccaacctgtccccg 228 Query: 264 gccgacgtggccgccatcaaggccgcgcacccgaacgtgagcgtcatggtcggcctcggc 323 |||||||| |||||| ||||||| |||||||| ||||| ||||||||||||||||||||| Sbjct: 229 gccgacgtcgccgccgtcaaggcggcgcaccccaacgtcagcgtcatggtcggcctcggc 288 Query: 324 ggcgacagcgtgcaggacatcgtcaaggtctccttcgcgcccaactccgtcgactcgtgg 383 ||||||||||||||||||| || |||||||| |||| | || | |||||||||||||||| Sbjct: 289 ggcgacagcgtgcaggacaccgccaaggtcttcttctccccgacctccgtcgactcgtgg 348 Query: 384 gtggccaacgccgtggcgtcgctctcgcgcctcatcaacgagtacggnctcgacggggtg 443 |||||||||||||| || || |||| || ||||| ||| ||||| |||||||| || Sbjct: 349 gtggccaacgccgtcgcctccgtctccggcatcatcgacgcctacggcctcgacggcgtc 408 Query: 444 gacgtcgactacg 456 ||||||||||||| Sbjct: 409 gacgtcgactacg 421 Score = 168 bits (85), Expect = 1e-38 Identities = 118/129 (91%) Strand = Plus / Plus Query: 57 gccatgacgaacgggtacctgttccgggagtacatcggcgcgcagttcaccggcgtccgg 116 ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 22 gccatgacgaacgggtacctgttccgggagtacatcggcgcgcagttcaccggagtccgc 81 Query: 117 ttctccgacgtgcccgtcaacaccggcgtcagcttccactacatcctcgccttcgccatc 176 ||||||||||||||| ||||| | | |||||||| ||| ||||||| ||||||||||| Sbjct: 82 ttctccgacgtgcccatcaacccaaacctcagcttcaacttcatcctctccttcgccatc 141 Query: 177 gactacacg 185 ||||||||| Sbjct: 142 gactacacg 150
>ref|NM_196498.1| Oryza sativa (japonica cultivar-group) putative class III chitinase (OSJNBa0032I20.10), mRNA Length = 861 Score = 170 bits (86), Expect = 3e-39 Identities = 110/118 (93%) Strand = Plus / Plus Query: 65 gaacgggtacctgttccgggagtacatcggcgcgcagttcaccggcgtccggttctccga 124 |||||| ||| ||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct: 6 gaacggctacttgttccgggagtacatcggcgcgcagttcaccggcgtgcgcttctccga 65 Query: 125 cgtgcccgtcaacaccggcgtcagcttccactacatcctcgccttcgccatcgactac 182 ||||||||||||| | ||| |||||||||||| ||||||||||||||||||||||||| Sbjct: 66 cgtgcccgtcaacccgggcctcagcttccacttcatcctcgccttcgccatcgactac 123 Score = 60.0 bits (30), Expect = 7e-06 Identities = 93/114 (81%) Strand = Plus / Plus Query: 217 ccaacggcgcgttcagcgcgttctgggacacggcgagcctgtcccgcgccgacgtggccg 276 ||||||||| |||| | ||| |||||||||||| | |||||||| |||| ||| |||| Sbjct: 158 ccaacggcgtgttcgccccgtactgggacacggccaacctgtccccggccgccgtcgccg 217 Query: 277 ccatcaaggccgcgcacccgaacgtgagcgtcatggtcggcctcggcggcgaca 330 | |||||| |||||||| ||| | |||||||| ||| |||||||||||||| Sbjct: 218 cggccaaggcggcgcaccccaacctcagcgtcatcctcgccctcggcggcgaca 271 Score = 44.1 bits (22), Expect = 0.39 Identities = 39/45 (86%) Strand = Plus / Plus Query: 412 gcctcatcaacgagtacggnctcgacggggtggacgtcgactacg 456 |||||||| ||| ||||| |||||||| || ||||||||||||| Sbjct: 359 gcctcatcgacgcctacggcctcgacggcgtcgacgtcgactacg 403
>gb|AF296279.1|AF296279 Oryza sativa subsp. japonica class III chitinase (chib1) gene, complete cds Length = 1038 Score = 170 bits (86), Expect = 3e-39 Identities = 110/118 (93%) Strand = Plus / Plus Query: 65 gaacgggtacctgttccgggagtacatcggcgcgcagttcaccggcgtccggttctccga 124 |||||| ||| ||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct: 57 gaacggctacttgttccgggagtacatcggcgcgcagttcaccggcgtgcgcttctccga 116 Query: 125 cgtgcccgtcaacaccggcgtcagcttccactacatcctcgccttcgccatcgactac 182 ||||||||||||| | ||| |||||||||||| ||||||||||||||||||||||||| Sbjct: 117 cgtgcccgtcaacccgggcctcagcttccacttcatcctcgccttcgccatcgactac 174 Score = 60.0 bits (30), Expect = 7e-06 Identities = 93/114 (81%) Strand = Plus / Plus Query: 217 ccaacggcgcgttcagcgcgttctgggacacggcgagcctgtcccgcgccgacgtggccg 276 ||||||||| |||| | ||| |||||||||||| | |||||||| |||| ||| |||| Sbjct: 209 ccaacggcgtgttcgccccgtactgggacacggccaacctgtccccggccgccgtcgccg 268 Query: 277 ccatcaaggccgcgcacccgaacgtgagcgtcatggtcggcctcggcggcgaca 330 | |||||| |||||||| ||| | |||||||| ||| |||||||||||||| Sbjct: 269 cggccaaggcggcgcaccccaacctcagcgtcatcctcgccctcggcggcgaca 322 Score = 44.1 bits (22), Expect = 0.39 Identities = 39/45 (86%) Strand = Plus / Plus Query: 412 gcctcatcaacgagtacggnctcgacggggtggacgtcgactacg 456 |||||||| ||| ||||| |||||||| || ||||||||||||| Sbjct: 410 gcctcatcgacgcctacggcctcgacggcgtcgacgtcgactacg 454
>dbj|AK104397.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-202-C10, full insert sequence Length = 989 Score = 170 bits (86), Expect = 3e-39 Identities = 110/118 (93%) Strand = Plus / Plus Query: 65 gaacgggtacctgttccgggagtacatcggcgcgcagttcaccggcgtccggttctccga 124 |||||| ||| ||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct: 62 gaacggctacttgttccgggagtacatcggcgcgcagttcaccggcgtgcgcttctccga 121 Query: 125 cgtgcccgtcaacaccggcgtcagcttccactacatcctcgccttcgccatcgactac 182 ||||||||||||| | ||| |||||||||||| ||||||||||||||||||||||||| Sbjct: 122 cgtgcccgtcaacccgggcctcagcttccacttcatcctcgccttcgccatcgactac 179 Score = 60.0 bits (30), Expect = 7e-06 Identities = 93/114 (81%) Strand = Plus / Plus Query: 217 ccaacggcgcgttcagcgcgttctgggacacggcgagcctgtcccgcgccgacgtggccg 276 ||||||||| |||| | ||| |||||||||||| | |||||||| |||| ||| |||| Sbjct: 214 ccaacggcgtgttcgccccgtactgggacacggccaacctgtccccggccgccgtcgccg 273 Query: 277 ccatcaaggccgcgcacccgaacgtgagcgtcatggtcggcctcggcggcgaca 330 | |||||| |||||||| ||| | |||||||| ||| |||||||||||||| Sbjct: 274 cggccaaggcggcgcaccccaacctcagcgtcatcctcgccctcggcggcgaca 327 Score = 44.1 bits (22), Expect = 0.39 Identities = 39/45 (86%) Strand = Plus / Plus Query: 412 gcctcatcaacgagtacggnctcgacggggtggacgtcgactacg 456 |||||||| ||| ||||| |||||||| || ||||||||||||| Sbjct: 415 gcctcatcgacgcctacggcctcgacggcgtcgacgtcgactacg 459
>dbj|AK104202.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-304-C04, full insert sequence Length = 1053 Score = 170 bits (86), Expect = 3e-39 Identities = 110/118 (93%) Strand = Plus / Plus Query: 65 gaacgggtacctgttccgggagtacatcggcgcgcagttcaccggcgtccggttctccga 124 |||||| ||| ||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct: 62 gaacggctacttgttccgggagtacatcggcgcgcagttcaccggcgtgcgcttctccga 121 Query: 125 cgtgcccgtcaacaccggcgtcagcttccactacatcctcgccttcgccatcgactac 182 ||||||||||||| | ||| |||||||||||| ||||||||||||||||||||||||| Sbjct: 122 cgtgcccgtcaacccgggcctcagcttccacttcatcctcgccttcgccatcgactac 179 Score = 60.0 bits (30), Expect = 7e-06 Identities = 93/114 (81%) Strand = Plus / Plus Query: 217 ccaacggcgcgttcagcgcgttctgggacacggcgagcctgtcccgcgccgacgtggccg 276 ||||||||| |||| | ||| |||||||||||| | |||||||| |||| ||| |||| Sbjct: 214 ccaacggcgtgttcgccccgtactgggacacggccaacctgtccccggccgccgtcgccg 273 Query: 277 ccatcaaggccgcgcacccgaacgtgagcgtcatggtcggcctcggcggcgaca 330 | |||||| |||||||| ||| | |||||||| ||| |||||||||||||| Sbjct: 274 cggccaaggcggcgcaccccaacctcagcgtcatcctcgccctcggcggcgaca 327 Score = 44.1 bits (22), Expect = 0.39 Identities = 39/45 (86%) Strand = Plus / Plus Query: 412 gcctcatcaacgagtacggnctcgacggggtggacgtcgactacg 456 |||||||| ||| ||||| |||||||| || ||||||||||||| Sbjct: 415 gcctcatcgacgcctacggcctcgacggcgtcgacgtcgactacg 459
>dbj|AK104100.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-201-G07, full insert sequence Length = 1026 Score = 170 bits (86), Expect = 3e-39 Identities = 110/118 (93%) Strand = Plus / Plus Query: 65 gaacgggtacctgttccgggagtacatcggcgcgcagttcaccggcgtccggttctccga 124 |||||| ||| ||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct: 62 gaacggctacttgttccgggagtacatcggcgcgcagttcaccggcgtgcgcttctccga 121 Query: 125 cgtgcccgtcaacaccggcgtcagcttccactacatcctcgccttcgccatcgactac 182 ||||||||||||| | ||| |||||||||||| ||||||||||||||||||||||||| Sbjct: 122 cgtgcccgtcaacccgggcctcagcttccacttcatcctcgccttcgccatcgactac 179 Score = 60.0 bits (30), Expect = 7e-06 Identities = 93/114 (81%) Strand = Plus / Plus Query: 217 ccaacggcgcgttcagcgcgttctgggacacggcgagcctgtcccgcgccgacgtggccg 276 ||||||||| |||| | ||| |||||||||||| | |||||||| |||| ||| |||| Sbjct: 214 ccaacggcgtgttcgccccgtactgggacacggccaacctgtccccggccgccgtcgccg 273 Query: 277 ccatcaaggccgcgcacccgaacgtgagcgtcatggtcggcctcggcggcgaca 330 | |||||| |||||||| ||| | |||||||| ||| |||||||||||||| Sbjct: 274 cggccaaggcggcgcaccccaacctcagcgtcatcctcgccctcggcggcgaca 327 Score = 44.1 bits (22), Expect = 0.39 Identities = 39/45 (86%) Strand = Plus / Plus Query: 412 gcctcatcaacgagtacggnctcgacggggtggacgtcgactacg 456 |||||||| ||| ||||| |||||||| || ||||||||||||| Sbjct: 415 gcctcatcgacgcctacggcctcgacggcgtcgacgtcgactacg 459
>dbj|AK059767.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-203-G07, full insert sequence Length = 1069 Score = 170 bits (86), Expect = 3e-39 Identities = 110/118 (93%) Strand = Plus / Plus Query: 65 gaacgggtacctgttccgggagtacatcggcgcgcagttcaccggcgtccggttctccga 124 |||||| ||| ||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct: 62 gaacggctacttgttccgggagtacatcggcgcgcagttcaccggcgtgcgcttctccga 121 Query: 125 cgtgcccgtcaacaccggcgtcagcttccactacatcctcgccttcgccatcgactac 182 ||||||||||||| | ||| |||||||||||| ||||||||||||||||||||||||| Sbjct: 122 cgtgcccgtcaacccgggcctcagcttccacttcatcctcgccttcgccatcgactac 179 Score = 60.0 bits (30), Expect = 7e-06 Identities = 93/114 (81%) Strand = Plus / Plus Query: 217 ccaacggcgcgttcagcgcgttctgggacacggcgagcctgtcccgcgccgacgtggccg 276 ||||||||| |||| | ||| |||||||||||| | |||||||| |||| ||| |||| Sbjct: 214 ccaacggcgtgttcgccccgtactgggacacggccaacctgtccccggccgccgtcgccg 273 Query: 277 ccatcaaggccgcgcacccgaacgtgagcgtcatggtcggcctcggcggcgaca 330 | |||||| |||||||| ||| | |||||||| ||| |||||||||||||| Sbjct: 274 cggccaaggcggcgcaccccaacctcagcgtcatcctcgccctcggcggcgaca 327 Score = 44.1 bits (22), Expect = 0.39 Identities = 39/45 (86%) Strand = Plus / Plus Query: 412 gcctcatcaacgagtacggnctcgacggggtggacgtcgactacg 456 |||||||| ||| ||||| |||||||| || ||||||||||||| Sbjct: 415 gcctcatcgacgcctacggcctcgacggcgtcgacgtcgactacg 459
>dbj|AB035668.1| Tulipa bakeri tbc1 mRNA for bulb chitinase-1, complete cds Length = 1106 Score = 54.0 bits (27), Expect = 4e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 150 ttccactacatcctcgccttcgccatcgactacac 184 ||||||| ||||||||| ||||||||||||||||| Sbjct: 171 ttccacttcatcctcgctttcgccatcgactacac 205
>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome Length = 2909809 Score = 48.1 bits (24), Expect = 0.025 Identities = 27/28 (96%) Strand = Plus / Minus Query: 186 ccggtggcgcagaagccgacgccgacgc 213 ||||||||||||| |||||||||||||| Sbjct: 937764 ccggtggcgcagacgccgacgccgacgc 937737
>emb|AL591985.1|RME591985 Sinorhizobium meliloti 1021 complete pSymB Length = 1683333 Score = 46.1 bits (23), Expect = 0.100 Identities = 26/27 (96%) Strand = Plus / Plus Query: 265 ccgacgtggccgccatcaaggccgcgc 291 |||||| |||||||||||||||||||| Sbjct: 1311810 ccgacgaggccgccatcaaggccgcgc 1311836
>gb|DQ427568.1| Sorghum bicolor voucher PI585454 locus CSU705 genomic sequence Length = 691 Score = 46.1 bits (23), Expect = 0.100 Identities = 23/23 (100%) Strand = Plus / Plus Query: 39 gctccagctcgatcgatcgccat 61 ||||||||||||||||||||||| Sbjct: 544 gctccagctcgatcgatcgccat 566
>gb|DQ427567.1| Sorghum bicolor voucher PI267539 locus CSU705 genomic sequence Length = 691 Score = 46.1 bits (23), Expect = 0.100 Identities = 23/23 (100%) Strand = Plus / Plus Query: 39 gctccagctcgatcgatcgccat 61 ||||||||||||||||||||||| Sbjct: 544 gctccagctcgatcgatcgccat 566
>gb|DQ427566.1| Sorghum bicolor voucher PI267408 locus CSU705 genomic sequence Length = 691 Score = 46.1 bits (23), Expect = 0.100 Identities = 23/23 (100%) Strand = Plus / Plus Query: 39 gctccagctcgatcgatcgccat 61 ||||||||||||||||||||||| Sbjct: 544 gctccagctcgatcgatcgccat 566
>gb|DQ427564.1| Sorghum bicolor voucher PI152702 locus CSU705 genomic sequence Length = 684 Score = 46.1 bits (23), Expect = 0.100 Identities = 23/23 (100%) Strand = Plus / Plus Query: 39 gctccagctcgatcgatcgccat 61 ||||||||||||||||||||||| Sbjct: 537 gctccagctcgatcgatcgccat 559
>gb|DQ427563.1| Sorghum bicolor voucher NSL92371 locus CSU705 genomic sequence Length = 691 Score = 46.1 bits (23), Expect = 0.100 Identities = 23/23 (100%) Strand = Plus / Plus Query: 39 gctccagctcgatcgatcgccat 61 ||||||||||||||||||||||| Sbjct: 544 gctccagctcgatcgatcgccat 566
>gb|DQ427562.1| Sorghum bicolor voucher NSL87902 locus CSU705 genomic sequence Length = 691 Score = 46.1 bits (23), Expect = 0.100 Identities = 23/23 (100%) Strand = Plus / Plus Query: 39 gctccagctcgatcgatcgccat 61 ||||||||||||||||||||||| Sbjct: 544 gctccagctcgatcgatcgccat 566
>gb|DQ427560.1| Sorghum bicolor voucher NSL77217 locus CSU705 genomic sequence Length = 691 Score = 46.1 bits (23), Expect = 0.100 Identities = 23/23 (100%) Strand = Plus / Plus Query: 39 gctccagctcgatcgatcgccat 61 ||||||||||||||||||||||| Sbjct: 544 gctccagctcgatcgatcgccat 566
>gb|DQ427559.1| Sorghum bicolor voucher NSL77034 locus CSU705 genomic sequence Length = 691 Score = 46.1 bits (23), Expect = 0.100 Identities = 23/23 (100%) Strand = Plus / Plus Query: 39 gctccagctcgatcgatcgccat 61 ||||||||||||||||||||||| Sbjct: 544 gctccagctcgatcgatcgccat 566
>gb|DQ427557.1| Sorghum bicolor voucher NSL56003 locus CSU705 genomic sequence Length = 691 Score = 46.1 bits (23), Expect = 0.100 Identities = 23/23 (100%) Strand = Plus / Plus Query: 39 gctccagctcgatcgatcgccat 61 ||||||||||||||||||||||| Sbjct: 544 gctccagctcgatcgatcgccat 566
>gb|DQ427556.1| Sorghum bicolor voucher NSL55243 locus CSU705 genomic sequence Length = 691 Score = 46.1 bits (23), Expect = 0.100 Identities = 23/23 (100%) Strand = Plus / Plus Query: 39 gctccagctcgatcgatcgccat 61 ||||||||||||||||||||||| Sbjct: 544 gctccagctcgatcgatcgccat 566
>gb|DQ427554.1| Sorghum bicolor voucher NSL51030 locus CSU705 genomic sequence Length = 691 Score = 46.1 bits (23), Expect = 0.100 Identities = 23/23 (100%) Strand = Plus / Plus Query: 39 gctccagctcgatcgatcgccat 61 ||||||||||||||||||||||| Sbjct: 544 gctccagctcgatcgatcgccat 566
>gb|DQ427553.1| Sorghum bicolor voucher NSL50875 locus CSU705 genomic sequence Length = 691 Score = 46.1 bits (23), Expect = 0.100 Identities = 23/23 (100%) Strand = Plus / Plus Query: 39 gctccagctcgatcgatcgccat 61 ||||||||||||||||||||||| Sbjct: 544 gctccagctcgatcgatcgccat 566
>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome Length = 3696649 Score = 44.1 bits (22), Expect = 0.39 Identities = 28/30 (93%) Strand = Plus / Plus Query: 195 cagaagccgacgccgacgccgaccaacggc 224 ||||||||||||| ||||||||||| |||| Sbjct: 3570971 cagaagccgacgctgacgccgaccaccggc 3571000
>gb|DQ118863.1| Streptomyces fradiae strain NRRL18158 lipopeptide antibiotic A54145 biosynthetic gene cluster, complete sequence Length = 126933 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Plus Query: 313 tcggcctcggcggcgacagcgt 334 |||||||||||||||||||||| Sbjct: 64543 tcggcctcggcggcgacagcgt 64564
>gb|AF446141.1| Aegilops tauschii LZ-NBS-LRR class RGA, NBS-LRR class RGA, HCBT-like putative defense response protein, and putative alliin lyase genes, complete cds; and unknown genes Length = 106618 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Plus Query: 196 agaagccgacgccgacgccgac 217 |||||||||||||||||||||| Sbjct: 28073 agaagccgacgccgacgccgac 28094
>ref|XM_475628.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1509 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 268 acgtggccgccatcaaggccgcgca 292 ||||||||||||||||||| ||||| Sbjct: 152 acgtggccgccatcaaggcggcgca 176
>ref|XM_478772.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1227 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 195 cagaagccgacgccgacgccg 215 ||||||||||||||||||||| Sbjct: 68 cagaagccgacgccgacgccg 88
>gb|AC119288.4| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0017J22, complete sequence Length = 177153 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 268 acgtggccgccatcaaggccgcgca 292 ||||||||||||||||||| ||||| Sbjct: 96030 acgtggccgccatcaaggcggcgca 96054
>gb|AC137614.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0034O12, complete sequence Length = 156263 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 268 acgtggccgccatcaaggccgcgca 292 ||||||||||||||||||| ||||| Sbjct: 32179 acgtggccgccatcaaggcggcgca 32203
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 197 gaagccgacgccgacgccgac 217 ||||||||||||||||||||| Sbjct: 637023 gaagccgacgccgacgccgac 637043
>emb|CR931997.1| Corynebacterium jeikeium K411 complete genome Length = 2462499 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 258 tcccgcgccgacgtggccgcc 278 ||||||||||||||||||||| Sbjct: 1672585 tcccgcgccgacgtggccgcc 1672605
>gb|AC104276.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1231_F08, complete sequence Length = 118049 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 268 acgtggccgccatcaaggccgcgca 292 ||||||||||||||||||| ||||| Sbjct: 33830 acgtggccgccatcaaggcggcgca 33854
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 314 cggcctcggcggcgacagcgt 334 ||||||||||||||||||||| Sbjct: 350738 cggcctcggcggcgacagcgt 350758
>gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome Length = 4712337 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 33 aggccagctccagctcgatcg 53 ||||||||||||||||||||| Sbjct: 3795001 aggccagctccagctcgatcg 3794981
>emb|AJ575230.1|OSA575230 Oryza sativa (japonica cultivar-group) partial mRNA for TA6 protein Length = 720 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 197 gaagccgacgccgacgccgac 217 ||||||||||||||||||||| Sbjct: 10 gaagccgacgccgacgccgac 30
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 314 cggcctcggcggcgacagcgt 334 ||||||||||||||||||||| Sbjct: 566692 cggcctcggcggcgacagcgt 566712
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 195 cagaagccgacgccgacgccg 215 ||||||||||||||||||||| Sbjct: 22949868 cagaagccgacgccgacgccg 22949888
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 268 acgtggccgccatcaaggccgcgca 292 ||||||||||||||||||| ||||| Sbjct: 3466548 acgtggccgccatcaaggcggcgca 3466572
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 197 gaagccgacgccgacgccgac 217 ||||||||||||||||||||| Sbjct: 637021 gaagccgacgccgacgccgac 637041
>gb|AC121490.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0005F16, complete sequence Length = 160053 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 197 gaagccgacgccgacgccgac 217 ||||||||||||||||||||| Sbjct: 22904 gaagccgacgccgacgccgac 22924
>gb|AF049136.1|AF049136 Locusta migratoria ecdysone receptor mRNA, complete cds Length = 2401 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 197 gaagccgacgccgacgccgac 217 ||||||||||||||||||||| Sbjct: 596 gaagccgacgccgacgccgac 576
>dbj|AP005908.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1121_A05 Length = 172668 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 195 cagaagccgacgccgacgccg 215 ||||||||||||||||||||| Sbjct: 25082 cagaagccgacgccgacgccg 25102
>dbj|AK067241.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013096G22, full insert sequence Length = 2591 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 197 gaagccgacgccgacgccgac 217 ||||||||||||||||||||| Sbjct: 27 gaagccgacgccgacgccgac 47
>dbj|AK065242.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002I12, full insert sequence Length = 1226 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 195 cagaagccgacgccgacgccg 215 ||||||||||||||||||||| Sbjct: 68 cagaagccgacgccgacgccg 88
>gb|CP000150.1| Burkholderia sp. 383 chromosome 3, complete sequence Length = 1395069 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 210 acgccgaccaacggcgcgttcagc 233 ||||||||| |||||||||||||| Sbjct: 1164751 acgccgaccgacggcgcgttcagc 1164774
>ref|XM_466715.1| Oryza sativa (japonica cultivar-group), mRNA Length = 285 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 200 gccgacgccgacgccgacca 219 |||||||||||||||||||| Sbjct: 220 gccgacgccgacgccgacca 239
>ref|XM_472689.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1524 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 197 gaagccgacgccgacgccga 216 |||||||||||||||||||| Sbjct: 432 gaagccgacgccgacgccga 413
>gb|CP000144.1| Rhodobacter sphaeroides 2.4.1 chromosome 2, complete genome Length = 943016 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 314 cggcctcggcggcgacagcg 333 |||||||||||||||||||| Sbjct: 703627 cggcctcggcggcgacagcg 703646
>gb|AY683004.1| Zea mays monosaccharide transport protein 1 (MST1) mRNA, complete cds Length = 1770 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 197 gaagccgacgccgacgccga 216 |||||||||||||||||||| Sbjct: 477 gaagccgacgccgacgccga 458
>gb|AE017286.1| Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough plasmid pDV, complete sequence Length = 202301 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 259 cccgcgccgacgtggccgcc 278 |||||||||||||||||||| Sbjct: 2097 cccgcgccgacgtggccgcc 2078
>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence Length = 3806533 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 281 caaggccgcgcacccgaacg 300 |||||||||||||||||||| Sbjct: 3753613 caaggccgcgcacccgaacg 3753594
>emb|X58404.1|NGPILE13 N.gonorrhoeae pilE1 gene for L-pilin (MS11-D3a) Length = 1154 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 198 aagccgacgccgacgccgac 217 |||||||||||||||||||| Sbjct: 407 aagccgacgccgacgccgac 426
>emb|BX640444.1| Bordetella bronchiseptica strain RB50, complete genome; segment 8/16 Length = 349008 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 281 caaggccgcgcacccgaacg 300 |||||||||||||||||||| Sbjct: 152700 caaggccgcgcacccgaacg 152719
>emb|BX640427.1| Bordetella parapertussis strain 12822, complete genome; segment 5/14 Length = 348997 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 281 caaggccgcgcacccgaacg 300 |||||||||||||||||||| Sbjct: 75754 caaggccgcgcacccgaacg 75773
>emb|AL662937.4|OSJN00140 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0027G07, complete sequence Length = 179021 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 197 gaagccgacgccgacgccga 216 |||||||||||||||||||| Sbjct: 34951 gaagccgacgccgacgccga 34932
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 40.1 bits (20), Expect = 6.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 262 gcgccgacgtggccgccatcaaggccgc 289 |||||||||||| |||||||||||||| Sbjct: 2674896 gcgccgacgtggaggccatcaaggccgc 2674869
>dbj|AK154778.1| Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN full-length enriched library, clone:F630106I02 product:ribosomal protein S6 kinase polypeptide 3, full insert sequence Length = 3026 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 200 gccgacgccgacgccgacca 219 |||||||||||||||||||| Sbjct: 98 gccgacgccgacgccgacca 79
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 200 gccgacgccgacgccgacca 219 |||||||||||||||||||| Sbjct: 5370072 gccgacgccgacgccgacca 5370053
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 197 gaagccgacgccgacgccga 216 |||||||||||||||||||| Sbjct: 22592851 gaagccgacgccgacgccga 22592832
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 200 gccgacgccgacgccgacca 219 |||||||||||||||||||| Sbjct: 24248291 gccgacgccgacgccgacca 24248272
>gb|AY787762.1| Streptomyces filamentosus strain NRRL 11379 daptomycin biosynthetic gene cluster, partial sequence Length = 127559 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 317 cctcggcggcgacagcgtgc 336 |||||||||||||||||||| Sbjct: 68811 cctcggcggcgacagcgtgc 68830
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 411 cgcctcatcaacgagtacgg 430 |||||||||||||||||||| Sbjct: 4502585 cgcctcatcaacgagtacgg 4502566
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 305 cgtcatggtcggcctcggcggcga 328 ||||||||||||| |||||||||| Sbjct: 6456876 cgtcatggtcggcatcggcggcga 6456853
>dbj|AP005300.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ2055_H10 Length = 119290 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 200 gccgacgccgacgccgacca 219 |||||||||||||||||||| Sbjct: 48679 gccgacgccgacgccgacca 48660
>gb|U58846.1|NGU58846 Neisseria gonorrhoeae pilS1 silent pilus locus Length = 4480 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 198 aagccgacgccgacgccgac 217 |||||||||||||||||||| Sbjct: 3471 aagccgacgccgacgccgac 3490
>dbj|AK121306.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023111J01, full insert sequence Length = 2260 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 197 gaagccgacgccgacgccga 216 |||||||||||||||||||| Sbjct: 663 gaagccgacgccgacgccga 644
>gb|AE004969.1| Neisseria gonorrhoeae FA 1090, complete genome Length = 2153922 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 198 aagccgacgccgacgccgac 217 |||||||||||||||||||| Sbjct: 2044870 aagccgacgccgacgccgac 2044851
>gb|BC111715.1| Homo sapiens protein tyrosine phosphatase, receptor type, H, mRNA (cDNA clone MGC:133059 IMAGE:40008777), complete cds Length = 2951 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 268 acgtggccgccatcaaggcc 287 |||||||||||||||||||| Sbjct: 2800 acgtggccgccatcaaggcc 2819
>dbj|AB070951.1| Streptomyces avermitilis peptide-2 biosynthetic gene cluster Length = 32748 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 411 cgcctcatcaacgagtacgg 430 |||||||||||||||||||| Sbjct: 18275 cgcctcatcaacgagtacgg 18294
>emb|AL808146.3| Mouse DNA sequence from clone RP23-52L10 on chromosome X, complete sequence Length = 159820 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 200 gccgacgccgacgccgacca 219 |||||||||||||||||||| Sbjct: 10683 gccgacgccgacgccgacca 10664 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,242,284 Number of Sequences: 3902068 Number of extensions: 2242284 Number of successful extensions: 60324 Number of sequences better than 10.0: 79 Number of HSP's better than 10.0 without gapping: 79 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 57878 Number of HSP's gapped (non-prelim): 2416 length of query: 456 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 434 effective length of database: 17,147,199,772 effective search space: 7441884701048 effective search space used: 7441884701048 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
