Clone Information

BLAST Search Result

Clone Name	bart53f04
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	PHB2_CAEEL (P50093) Mitochondrial prohibitin complex protein 2 (...	114	1e-25
2	PHB2_YEAST (P50085) Prohibitin-2	110	1e-24
3	L2CC_DROME (P24156) Protein l(2)37Cc	109	3e-24
4	PHB2_RAT (Q5XIH7) Prohibitin-2 (B-cell receptor-associated prote...	109	3e-24
5	PHB2_MOUSE (O35129) Prohibitin-2 (B-cell receptor-associated pro...	108	8e-24
6	PHB2_HUMAN (Q99623) Prohibitin-2 (B-cell receptor-associated pro...	108	8e-24
7	PHB1_CAEEL (Q9BKU4) Mitochondrial prohibitin complex protein 1 (...	104	9e-23
8	PHB_RAT (P67779) Prohibitin	100	2e-21
9	PHB_MOUSE (P67778) Prohibitin (B-cell receptor-associated protei...	100	2e-21
10	PHB_HUMAN (P35232) Prohibitin	99	5e-21
11	PHB_CHICK (P84173) Prohibitin	99	5e-21
12	PHB_BOVIN (Q3T165) Prohibitin	99	5e-21
13	PHB1_YEAST (P40961) Prohibitin-1	94	2e-19
14	LAG3_CAEEL (Q09260) Protein lag-3 (Abnormal germ line proliferat...	33	0.24
15	HAND2_CHICK (Q90690) Heart- and neural crest derivatives-express...	33	0.24
16	RP54_KLEOX (P06223) RNA polymerase sigma-54 factor	32	0.70
17	NEO1_HUMAN (Q92859) Neogenin precursor	32	0.91
18	IF2P_NATPD (Q3IMS5) Probable translation initiation factor IF-2	31	1.6
19	YGY3_HALSQ (P21561) Hypothetical 50.6 kDa protein in the 5'regio...	30	2.0
20	ALX3_HUMAN (O95076) Homeobox protein aristaless-like 3 (Proline-...	30	2.0
21	ALX3_MOUSE (O70137) Homeobox protein aristaless-like 3 (Proline-...	30	2.7
22	FOXL2_MOUSE (O88470) Forkhead box protein L2 (Pituitary forkhead...	30	3.5
23	NMDE4_HUMAN (O15399) Glutamate [NMDA] receptor subunit epsilon 4...	30	3.5
24	FOXL2_HUMAN (P58012) Forkhead box protein L2	30	3.5
25	ZN469_HUMAN (Q96JG9) Zinc finger protein 469 (Fragment)	29	4.5
26	RPOD_CAUCR (P52324) RNA polymerase sigma factor rpoD (Sigma-70)	29	4.5
27	NEO1_MOUSE (P97798) Neogenin precursor	29	4.5
28	XERC2_RALSO (Q8XTL6) Tyrosine recombinase xerC 2	29	4.5
29	SYI_HALSA (Q9HN97) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isole...	29	4.5
30	SPEE1_RALSO (Q8XQC5) Probable spermidine synthase 1 (EC 2.5.1.16...	29	5.9
31	BRD4_HUMAN (O60885) Bromodomain-containing protein 4 (HUNK1 prot...	29	5.9
32	NMDE4_RAT (Q62645) Glutamate [NMDA] receptor subunit epsilon 4 p...	29	5.9
33	SPEE2_RALSO (Q8XQC8) Probable spermidine synthase 2 (EC 2.5.1.16...	29	5.9
34	TSC10_NEUCR (Q7RZR2) 3-ketodihydrosphingosine reductase tsc-10 (...	28	7.7
35	HIPK4_RAT (Q4V793) Homeodomain-interacting protein kinase 4 (EC ...	28	7.7
36	Y603_ENCCU (Q8STJ4) Hypothetical protein ECU06_0030/ECU06_1690/E...	28	7.7
37	SF3B4_HUMAN (Q15427) Splicing factor 3B subunit 4 (Spliceosome-a...	28	7.7
38	YAEI_ECOLI (P37049) Phosphodiesterase yaeI (EC 3.1.4.-)	28	7.7
39	MURG_NITOC (Q3J789) UDP-N-acetylglucosamine--N-acetylmuramyl-(pe...	28	7.7

>PHB2_CAEEL (P50093) Mitochondrial prohibitin complex protein 2 (Prohibitin-2)|
          Length = 286

 Score =  114 bits (284), Expect = 1e-25
 Identities = 51/85 (60%), Positives = 66/85 (77%)
 Frame = +3

Query: 186 KTLYNVEGGHRAIVFNRLEGIKDKVYPEGTHIVIPWFERPIIYDVRARPNLVESTSGSRD 365
           ++++ VE GHRAI+FNR+ G+   +Y EG H  IPWF+ PIIYD+RARPN + S +GS+D
Sbjct: 30  QSMFTVEAGHRAIMFNRIGGLSTDLYKEGLHFRIPWFQYPIIYDIRARPNQIRSPTGSKD 89

Query: 366 LQMVRIGLRVLTRPMPERLPTMYRT 440
           LQMV IGLRVL+RP PE L  +YRT
Sbjct: 90  LQMVNIGLRVLSRPNPEHLVHIYRT 114

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>PHB2_YEAST (P50085) Prohibitin-2|
          Length = 315

 Score =  110 bits (276), Expect = 1e-24
 Identities = 48/86 (55%), Positives = 66/86 (76%)
 Frame = +3

Query: 183 NKTLYNVEGGHRAIVFNRLEGIKDKVYPEGTHIVIPWFERPIIYDVRARPNLVESTSGSR 362
           N  L+NV+GGHRAIV++R+ G+  +++ EGTH + PW + PIIYDVRA+P  V S +G++
Sbjct: 55  NNALFNVDGGHRAIVYSRIHGVSSRIFNEGTHFIFPWLDTPIIYDVRAKPRNVASLTGTK 114

Query: 363 DLQMVRIGLRVLTRPMPERLPTMYRT 440
           DLQMV I  RVL+RP   +LPT+YRT
Sbjct: 115 DLQMVNITCRVLSRPDVVQLPTIYRT 140

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>L2CC_DROME (P24156) Protein l(2)37Cc|
          Length = 276

 Score =  109 bits (272), Expect = 3e-24
 Identities = 48/84 (57%), Positives = 64/84 (76%)
 Frame = +3

Query: 183 NKTLYNVEGGHRAIVFNRLEGIKDKVYPEGTHIVIPWFERPIIYDVRARPNLVESTSGSR 362
           N  LYNVEGGHRA++F+R  GIK+ V  EGTH  IPW +RPII+D+R++P  V   +GS+
Sbjct: 24  NSALYNVEGGHRAVIFDRFTGIKENVVGEGTHFFIPWVQRPIIFDIRSQPRNVPVITGSK 83

Query: 363 DLQMVRIGLRVLTRPMPERLPTMY 434
           DLQ V I LR+L RP+P++LP +Y
Sbjct: 84  DLQNVNITLRILYRPIPDQLPKIY 107

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>PHB2_RAT (Q5XIH7) Prohibitin-2 (B-cell receptor-associated protein BAP37)|
           (BAP-37)
          Length = 299

 Score =  109 bits (272), Expect = 3e-24
 Identities = 52/112 (46%), Positives = 70/112 (62%), Gaps = 1/112 (0%)
 Frame = +3

Query: 105 RMPSAPXXXXXXXXXXXXXXXXXXXXNKTLYNVEGGHRAIVFNRLEGIK-DKVYPEGTHI 281
           R+PS P                     ++++ VEGGHRAI FNR+ G++ D +  EG H 
Sbjct: 11  RLPSGPRGMGTALKLLLGAGAVAYGVRESVFTVEGGHRAIFFNRIGGVQQDTILAEGLHF 70

Query: 282 VIPWFERPIIYDVRARPNLVESTSGSRDLQMVRIGLRVLTRPMPERLPTMYR 437
            IPWF+ PIIYD+RARP  + S +GS+DLQMV I LRVL+RP  + LP+MY+
Sbjct: 71  RIPWFQYPIIYDIRARPRKISSPTGSKDLQMVNISLRVLSRPNAQELPSMYQ 122

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>PHB2_MOUSE (O35129) Prohibitin-2 (B-cell receptor-associated protein BAP37)|
           (Repressor of estrogen receptor activity)
          Length = 299

 Score =  108 bits (269), Expect = 8e-24
 Identities = 51/112 (45%), Positives = 70/112 (62%), Gaps = 1/112 (0%)
 Frame = +3

Query: 105 RMPSAPXXXXXXXXXXXXXXXXXXXXNKTLYNVEGGHRAIVFNRLEGIK-DKVYPEGTHI 281
           R+P+ P                     ++++ VEGGHRAI FNR+ G++ D +  EG H 
Sbjct: 11  RLPAGPRGMGTALKLLLGAGAVAYGVRESVFTVEGGHRAIFFNRIGGVQQDTILAEGLHF 70

Query: 282 VIPWFERPIIYDVRARPNLVESTSGSRDLQMVRIGLRVLTRPMPERLPTMYR 437
            IPWF+ PIIYD+RARP  + S +GS+DLQMV I LRVL+RP  + LP+MY+
Sbjct: 71  RIPWFQYPIIYDIRARPRKISSPTGSKDLQMVNISLRVLSRPNAQELPSMYQ 122

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>PHB2_HUMAN (Q99623) Prohibitin-2 (B-cell receptor-associated protein BAP37)|
           (Repressor of estrogen receptor activity) (D-prohibitin)
          Length = 299

 Score =  108 bits (269), Expect = 8e-24
 Identities = 51/112 (45%), Positives = 70/112 (62%), Gaps = 1/112 (0%)
 Frame = +3

Query: 105 RMPSAPXXXXXXXXXXXXXXXXXXXXNKTLYNVEGGHRAIVFNRLEGIK-DKVYPEGTHI 281
           R+P+ P                     ++++ VEGGHRAI FNR+ G++ D +  EG H 
Sbjct: 11  RLPAGPRGMGTALKLLLGAGAVAYGVRESVFTVEGGHRAIFFNRIGGVQQDTILAEGLHF 70

Query: 282 VIPWFERPIIYDVRARPNLVESTSGSRDLQMVRIGLRVLTRPMPERLPTMYR 437
            IPWF+ PIIYD+RARP  + S +GS+DLQMV I LRVL+RP  + LP+MY+
Sbjct: 71  RIPWFQYPIIYDIRARPRKISSPTGSKDLQMVNISLRVLSRPNAQELPSMYQ 122

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>PHB1_CAEEL (Q9BKU4) Mitochondrial prohibitin complex protein 1 (Prohibitin-1)|
          Length = 275

 Score =  104 bits (260), Expect = 9e-23
 Identities = 44/81 (54%), Positives = 63/81 (77%)
 Frame = +3

Query: 192 LYNVEGGHRAIVFNRLEGIKDKVYPEGTHIVIPWFERPIIYDVRARPNLVESTSGSRDLQ 371
           LYNV+GG RA++F+R  G+K++V  EGTH +IPW ++PII+D+R+ P  V + +GS+DLQ
Sbjct: 30  LYNVDGGQRAVIFDRFSGVKNEVVGEGTHFLIPWVQKPIIFDIRSTPRAVTTITGSKDLQ 89

Query: 372 MVRIGLRVLTRPMPERLPTMY 434
            V I LR+L RP P+RLP +Y
Sbjct: 90  NVNITLRILHRPSPDRLPNIY 110

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>PHB_RAT (P67779) Prohibitin|
          Length = 272

 Score =  100 bits (249), Expect = 2e-21
 Identities = 44/84 (52%), Positives = 61/84 (72%)
 Frame = +3

Query: 183 NKTLYNVEGGHRAIVFNRLEGIKDKVYPEGTHIVIPWFERPIIYDVRARPNLVESTSGSR 362
           N  LYNV+ GHRA++F+R  G++D V  EGTH +IPW ++PII+D R+RP  V   +GS+
Sbjct: 24  NSALYNVDAGHRAVIFDRFRGVQDIVVGEGTHFLIPWVQKPIIFDCRSRPRNVPVITGSK 83

Query: 363 DLQMVRIGLRVLTRPMPERLPTMY 434
           DLQ V I LR+L RP+  +LP +Y
Sbjct: 84  DLQNVNITLRILFRPVASQLPRIY 107

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>PHB_MOUSE (P67778) Prohibitin (B-cell receptor-associated protein 32) (BAP|
           32)
          Length = 272

 Score =  100 bits (249), Expect = 2e-21
 Identities = 44/84 (52%), Positives = 61/84 (72%)
 Frame = +3

Query: 183 NKTLYNVEGGHRAIVFNRLEGIKDKVYPEGTHIVIPWFERPIIYDVRARPNLVESTSGSR 362
           N  LYNV+ GHRA++F+R  G++D V  EGTH +IPW ++PII+D R+RP  V   +GS+
Sbjct: 24  NSALYNVDAGHRAVIFDRFRGVQDIVVGEGTHFLIPWVQKPIIFDCRSRPRNVPVITGSK 83

Query: 363 DLQMVRIGLRVLTRPMPERLPTMY 434
           DLQ V I LR+L RP+  +LP +Y
Sbjct: 84  DLQNVNITLRILFRPVASQLPRIY 107

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>PHB_HUMAN (P35232) Prohibitin|
          Length = 272

 Score = 99.0 bits (245), Expect = 5e-21
 Identities = 43/84 (51%), Positives = 61/84 (72%)
 Frame = +3

Query: 183 NKTLYNVEGGHRAIVFNRLEGIKDKVYPEGTHIVIPWFERPIIYDVRARPNLVESTSGSR 362
           N  LYNV+ GHRA++F+R  G++D V  EGTH +IPW ++PII+D R+RP  V   +GS+
Sbjct: 24  NSALYNVDAGHRAVIFDRFRGVQDIVVGEGTHFLIPWVQKPIIFDCRSRPRNVPVITGSK 83

Query: 363 DLQMVRIGLRVLTRPMPERLPTMY 434
           DLQ V I LR+L RP+  +LP ++
Sbjct: 84  DLQNVNITLRILFRPVASQLPRIF 107

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>PHB_CHICK (P84173) Prohibitin|
          Length = 272

 Score = 99.0 bits (245), Expect = 5e-21
 Identities = 42/84 (50%), Positives = 61/84 (72%)
 Frame = +3

Query: 183 NKTLYNVEGGHRAIVFNRLEGIKDKVYPEGTHIVIPWFERPIIYDVRARPNLVESTSGSR 362
           N  LYNV+ GHRA++F+R  G++D V  EGTH +IPW ++PII+D R+RP  +   +GS+
Sbjct: 24  NSALYNVDAGHRAVIFDRFRGVQDTVVGEGTHFLIPWVQKPIIFDCRSRPRNIPVITGSK 83

Query: 363 DLQMVRIGLRVLTRPMPERLPTMY 434
           DLQ V I LR+L RP+  +LP ++
Sbjct: 84  DLQNVNITLRILFRPVTAQLPRIF 107

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>PHB_BOVIN (Q3T165) Prohibitin|
          Length = 272

 Score = 99.0 bits (245), Expect = 5e-21
 Identities = 43/84 (51%), Positives = 61/84 (72%)
 Frame = +3

Query: 183 NKTLYNVEGGHRAIVFNRLEGIKDKVYPEGTHIVIPWFERPIIYDVRARPNLVESTSGSR 362
           N  LYNV+ GHRA++F+R  G++D V  EGTH +IPW ++PII+D R+RP  V   +GS+
Sbjct: 24  NSALYNVDAGHRAVIFDRFRGVQDIVVGEGTHFLIPWVQKPIIFDCRSRPRNVPVITGSK 83

Query: 363 DLQMVRIGLRVLTRPMPERLPTMY 434
           DLQ V I LR+L RP+  +LP ++
Sbjct: 84  DLQNVNITLRILFRPVASQLPRIF 107

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>PHB1_YEAST (P40961) Prohibitin-1|
          Length = 287

 Score = 93.6 bits (231), Expect = 2e-19
 Identities = 38/83 (45%), Positives = 62/83 (74%)
 Frame = +3

Query: 189 TLYNVEGGHRAIVFNRLEGIKDKVYPEGTHIVIPWFERPIIYDVRARPNLVESTSGSRDL 368
           ++Y+V+GG R ++F+R+ G+K +V  EGTH ++PW ++ IIYDVR +P  + + +G++DL
Sbjct: 28  SMYDVKGGSRGVIFDRINGVKQQVVGEGTHFLVPWLQKAIIYDVRTKPKSIATNTGTKDL 87

Query: 369 QMVRIGLRVLTRPMPERLPTMYR 437
           QMV + LRVL RP   +LP +Y+
Sbjct: 88  QMVSLTLRVLHRPEVLQLPAIYQ 110

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>LAG3_CAEEL (Q09260) Protein lag-3 (Abnormal germ line proliferation protein 3)|
           (Abnormal cell lineage protein 3)
          Length = 490

 Score = 33.5 bits (75), Expect = 0.24
 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
 Frame = +2

Query: 221 HRLQPPRGDQGQGLPGGHP---HRHPLVREAHHLRRPRA 328
           H+ Q      G G+P G+P   H HP    AHH+ +P A
Sbjct: 447 HQQQAQHHQMGYGIPNGYPQQMHMHPPAYGAHHMPQPTA 485

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>HAND2_CHICK (Q90690) Heart- and neural crest derivatives-expressed protein 2|
           (Deciduum, heart, autonomic nervous system and neural
           crest derivatives-expressed protein 2) (dHAND)
          Length = 216

 Score = 33.5 bits (75), Expect = 0.24
 Identities = 21/48 (43%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = +2

Query: 260 LPGGHPHRHPLVR-EAHHLRRPRAAQPRREHLREPGSPDGENWSSCSY 400
           L GG PH HP+V  E + LRR R  + RR  LR  G P    W   S+
Sbjct: 3   LVGGFPH-HPVVHHEGYPLRRRRCRRRRRHPLRPRGEPLLHGWLISSH 49

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>RP54_KLEOX (P06223) RNA polymerase sigma-54 factor|
          Length = 477

 Score = 32.0 bits (71), Expect = 0.70
 Identities = 20/70 (28%), Positives = 39/70 (55%)
 Frame = -2

Query: 347 ALDEVGPRADVVDDGPLEPGDDDVGALRVDLVLDPLEAVEDDGPVASLDVVEGLVAEVER 168
           A+D+ G     V+D     GDD++G   V+ VL  ++  +  G VA+ D+ + L+ ++ +
Sbjct: 147 AVDDTGYLTISVEDIVESIGDDEIGLEEVEAVLKRIQRFDPVG-VAAKDLRDCLLVQLSQ 205

Query: 167 GAAEQPELDQ 138
            A E P +++
Sbjct: 206 FAKETPWIEE 215

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>NEO1_HUMAN (Q92859) Neogenin precursor|
          Length = 1461

 Score = 31.6 bits (70), Expect = 0.91
 Identities = 19/47 (40%), Positives = 20/47 (42%)
 Frame = +2

Query: 230  QPPRGDQGQGLPGGHPHRHPLVREAHHLRRPRAAQPRREHLREPGSP 370
            QPP     Q +   HP  H L    HH      A P R HL  PGSP
Sbjct: 1244 QPP-----QPVISAHPI-HSLDNPHHHFHSSSLASPARSHLYHPGSP 1284

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>IF2P_NATPD (Q3IMS5) Probable translation initiation factor IF-2|
          Length = 602

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 28/91 (30%), Positives = 38/91 (41%), Gaps = 1/91 (1%)
 Frame = -2

Query: 407 GSCKNTKTNSHHLEIPAPGGALDEVGPRADVVDDGPLEPGDDDVGALRVDLVLD-PLEAV 231
           GS +         EIP     + +V PR   V     EP  + V A  VD++ D   EA 
Sbjct: 372 GSLEAIAAALEEAEIPIVRAEVGDVAPRDIAVASTAEEPKHEAVLAFNVDVLDDAEREAE 431

Query: 230 EDDGPVASLDVVEGLVAEVERGAAEQPELDQ 138
           E D  + + DV+  LV E +    E  E  Q
Sbjct: 432 EKDVKLFADDVIYQLVEEYDDYVTEIEEAQQ 462

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>YGY3_HALSQ (P21561) Hypothetical 50.6 kDa protein in the 5'region of gyrA and|
           gyrB (ORF 3)
          Length = 437

 Score = 30.4 bits (67), Expect = 2.0
 Identities = 20/58 (34%), Positives = 22/58 (37%), Gaps = 11/58 (18%)
 Frame = +2

Query: 230 QPPRGDQGQGL--PGGHPHRHPLVREAHHLRRPRAAQP---------RREHLREPGSP 370
           Q PRG         G HP R  L  +  H  RPR  QP          R HLR+   P
Sbjct: 137 QHPRGRHASDRVQDGAHPRRQRLREQPRHAGRPRRRQPPRRGRSRGTHRRHLRQAPRP 194

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>ALX3_HUMAN (O95076) Homeobox protein aristaless-like 3 (Proline-rich|
           transcription factor ALX3)
          Length = 343

 Score = 30.4 bits (67), Expect = 2.0
 Identities = 15/39 (38%), Positives = 16/39 (41%)
 Frame = +2

Query: 254 QGLPGGHPHRHPLVREAHHLRRPRAAQPRREHLREPGSP 370
           QG P   PH HP       L R  A  P   +L EP  P
Sbjct: 29  QGTPAAAPHLHPAPPRGPRLTRFPACGPLEPYLPEPAKP 67

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>ALX3_MOUSE (O70137) Homeobox protein aristaless-like 3 (Proline-rich|
           transcription factor ALX3)
          Length = 343

 Score = 30.0 bits (66), Expect = 2.7
 Identities = 15/39 (38%), Positives = 16/39 (41%)
 Frame = +2

Query: 254 QGLPGGHPHRHPLVREAHHLRRPRAAQPRREHLREPGSP 370
           QG P   PH HP       L R  A  P   +L EP  P
Sbjct: 29  QGTPDAAPHLHPAPPRGPRLSRFPACGPLEPYLPEPAKP 67

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>FOXL2_MOUSE (O88470) Forkhead box protein L2 (Pituitary forkhead factor)|
           (P-Frk)
          Length = 375

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 15/39 (38%), Positives = 16/39 (41%)
 Frame = +2

Query: 263 PGGHPHRHPLVREAHHLRRPRAAQPRREHLREPGSPDGE 379
           P  HPH HP    AHHL    A  P   H      P G+
Sbjct: 285 PPPHPHPHP---HAHHLHAAAAPPPAPPHHGAAAPPPGQ 320

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>NMDE4_HUMAN (O15399) Glutamate [NMDA] receptor subunit epsilon 4 precursor|
            (N-methyl D-aspartate receptor subtype 2D) (NR2D)
            (NMDAR2D) (EB11)
          Length = 1336

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 24/69 (34%), Positives = 25/69 (36%), Gaps = 6/69 (8%)
 Frame = +2

Query: 236  PRGDQGQGLPGGHPHRH------PLVREAHHLRRPRAAQPRREHLREPGSPDGENWSSCS 397
            PR     G P  HPHR       P     HH R  RAA         P S   E+ SSC 
Sbjct: 1220 PRRRARCGCPRSHPHRPRASHRTPAAAAPHHHRHRRAAGGWDLPPPAPTSRSLEDLSSCP 1279

Query: 398  YTTHARETT 424
                AR  T
Sbjct: 1280 RAAPARRLT 1288

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>FOXL2_HUMAN (P58012) Forkhead box protein L2|
          Length = 376

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 15/39 (38%), Positives = 16/39 (41%)
 Frame = +2

Query: 263 PGGHPHRHPLVREAHHLRRPRAAQPRREHLREPGSPDGE 379
           P  HPH HP    AHHL    A  P   H      P G+
Sbjct: 286 PPPHPHPHP---HAHHLHAAAAPPPAPPHHGAAAPPPGQ 321

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>ZN469_HUMAN (Q96JG9) Zinc finger protein 469 (Fragment)|
          Length = 2469

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 20/62 (32%), Positives = 28/62 (45%)
 Frame = +2

Query: 224  RLQPPRGDQGQGLPGGHPHRHPLVREAHHLRRPRAAQPRREHLREPGSPDGENWSSCSYT 403
            + QPPR  +   + G     H    +  H+ +P  AQ  +E LR PGSP  +     S T
Sbjct: 1038 KCQPPR-KKSHRVSGKERPNHSR-GDPSHVTQPPPAQGSKEVLRAPGSPHSQQLHPPSPT 1095

Query: 404  TH 409
             H
Sbjct: 1096 EH 1097

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>RPOD_CAUCR (P52324) RNA polymerase sigma factor rpoD (Sigma-70)|
          Length = 652

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = -2

Query: 311 DDGPLEPGDDDVGALRVDLVLDPLEAVEDDGPVASLDVVEGLVAE 177
           D+GP EP DD+ G  + +      E   DDG   ++  +EG + E
Sbjct: 200 DEGPAEPVDDEAGEAKAEGAEGEDEDDFDDGAGPTVSAMEGELRE 244

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>NEO1_MOUSE (P97798) Neogenin precursor|
          Length = 1493

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 18/47 (38%), Positives = 19/47 (40%)
 Frame = +2

Query: 230  QPPRGDQGQGLPGGHPHRHPLVREAHHLRRPRAAQPRREHLREPGSP 370
            QPP     Q +   HP  H L    HH      A P R HL  P SP
Sbjct: 1275 QPP-----QPVISAHPI-HSLDNPHHHFHSSSLASPARSHLYHPSSP 1315

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>XERC2_RALSO (Q8XTL6) Tyrosine recombinase xerC 2|
          Length = 347

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = +3

Query: 192 LYNVEGGHRAIVFNRLEGIKDKVYPEGTHIVIPWFERPIIYDVRARPNLV 341
           LY+V+   R       +G KD+V P G    + W +R   Y + ARP L+
Sbjct: 179 LYDVDATRRLAFVRDGKGAKDRVVPVGVR-ALAWLDR---YLLEARPQLI 224

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>SYI_HALSA (Q9HN97) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA|
            ligase) (IleRS)
          Length = 1070

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = -2

Query: 410  HGSCKNTKTNSHHLEIPAPGGALDEV--GPRADVVDDGPLEPGDDDVGAL 267
            HG     + N+  +E+  PG A DE+    RAD+ + GP     DD GA+
Sbjct: 868  HGDLLADRLNTRAIEVVEPGAAWDELAYSARADMSELGP--AFGDDAGAV 915

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>SPEE1_RALSO (Q8XQC5) Probable spermidine synthase 1 (EC 2.5.1.16) (Putrescine|
           aminopropyltransferase 1) (SPDSY 1)
          Length = 510

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 17/48 (35%), Positives = 22/48 (45%)
 Frame = -3

Query: 355 PEVLSTRLGRARTS*MMGLSNQGMTMWVPSG*TLSLIPSRRLKTMARW 212
           P VL+ RLG  RT  + GL N  + +W        L  S RL+    W
Sbjct: 156 PLVLAPRLGLVRTGFLFGLCNTAIAVWTLWHFRAELGLSARLRGAMAW 203

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>BRD4_HUMAN (O60885) Bromodomain-containing protein 4 (HUNK1 protein)|
          Length = 1362

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 18/48 (37%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
 Frame = +2

Query: 230  QPPRGDQGQGLPGGHPHRHPLVREAHHLRRPRAAQP-RREHLREPGSP 370
            QPP    GQ  P   P +   V + HH  R   + P    HLRE  SP
Sbjct: 1018 QPPHPPPGQQPPPPQPAKPQQVIQHHHSPRHHKSDPYSTGHLREAPSP 1065

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>NMDE4_RAT (Q62645) Glutamate [NMDA] receptor subunit epsilon 4 precursor|
            (N-methyl D-aspartate receptor subtype 2D) (NR2D)
            (NMDAR2D)
          Length = 1323

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 24/69 (34%), Positives = 25/69 (36%), Gaps = 5/69 (7%)
 Frame = +2

Query: 233  PPRGDQGQGLPGGHPHRHPLVREA-----HHLRRPRAAQPRREHLREPGSPDGENWSSCS 397
            PPR     G P  HPHR      A     HH R  RAA         P S   E+ SSC 
Sbjct: 1207 PPRRRARCGCPRPHPHRPRASHRAPAAAPHHHRHRRAAGGWDFPPPAPTSRSLEDLSSCP 1266

Query: 398  YTTHARETT 424
                 R  T
Sbjct: 1267 RAAPTRRLT 1275

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>SPEE2_RALSO (Q8XQC8) Probable spermidine synthase 2 (EC 2.5.1.16) (Putrescine|
           aminopropyltransferase 2) (SPDSY 2)
          Length = 525

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 17/48 (35%), Positives = 22/48 (45%)
 Frame = -3

Query: 355 PEVLSTRLGRARTS*MMGLSNQGMTMWVPSG*TLSLIPSRRLKTMARW 212
           P VL+ RLG  RT  + GL N  + +W        L  S RL+    W
Sbjct: 171 PLVLAPRLGLVRTGFLFGLCNTAIAVWTLWHFRAELGLSARLRGAMAW 218

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>TSC10_NEUCR (Q7RZR2) 3-ketodihydrosphingosine reductase tsc-10 (EC 1.1.1.102)|
           (3-dehydrosphinganine reductase) (KDS reductase)
          Length = 969

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
 Frame = +2

Query: 221 HRLQPPRGD--QGQGLPGGHPHRHPLVREAHHLRRPRAAQPR-REHLREP 361
           H+ Q  + D  QG G P  HPH+H        + +P+  QP   +H  +P
Sbjct: 676 HQQQQQQADMLQGLGQPQAHPHQHQHQPPVAPMGQPQQMQPSPHQHPMDP 725

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>HIPK4_RAT (Q4V793) Homeodomain-interacting protein kinase 4 (EC 2.7.11.1)|
          Length = 616

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +2

Query: 227 LQPPRGDQGQGLPGGHPHRH 286
           L+  RG + QGLP  HPH H
Sbjct: 581 LEGIRGSRAQGLPARHPHPH 600

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>Y603_ENCCU (Q8STJ4) Hypothetical protein ECU06_0030/ECU06_1690/ECU11_0020|
          Length = 248

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +2

Query: 272 HPHRHPLVREAHHLRRPRAAQPRREHLREP 361
           HP R+ L  +AHHLR P  +       R+P
Sbjct: 31  HPSRYHLHLQAHHLRSPLLSASAENRRRDP 60

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>SF3B4_HUMAN (Q15427) Splicing factor 3B subunit 4 (Spliceosome-associated|
           protein 49) (SAP 49) (SF3b50) (Pre-mRNA-splicing factor
           SF3b 49 kDa subunit)
          Length = 424

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 16/50 (32%), Positives = 19/50 (38%)
 Frame = +2

Query: 221 HRLQPPRGDQGQGLPGGHPHRHPLVREAHHLRRPRAAQPRREHLREPGSP 370
           H   PP G   +G P G P  HP     H +R P    P   +   P  P
Sbjct: 343 HPGPPPMGMPPRGPPFGSPMGHPGPMPPHGMRGPPPLMPPHGYTGPPRPP 392

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>YAEI_ECOLI (P37049) Phosphodiesterase yaeI (EC 3.1.4.-)|
          Length = 270

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 25/75 (33%), Positives = 32/75 (42%), Gaps = 3/75 (4%)
 Frame = -2

Query: 416 LWHGSCKNTKTNSHHLEIPAPGGALDEVGPRADVVDDGPLEP---GDDDVGALRVDLVLD 246
           LW G CK    +  +L    P   L       +V+ D P +    G    G LRV LV +
Sbjct: 167 LWAGQCKPPPASEANL----PRLVLAHNPDSKEVMRDEPWDLMLCGHTHGGQLRVPLVGE 222

Query: 245 PLEAVEDDGPVASLD 201
           P   VED   VA L+
Sbjct: 223 PFAPVEDKRYVAGLN 237

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>MURG_NITOC (Q3J789) UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide)|
           pyrophosphoryl-undecaprenol N-acetylglucosamine
           transferase (EC 2.4.1.227)
           (Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc
           transferase)
          Length = 359

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = -3

Query: 304 GLSNQGMTMWVPSG*TLSLIPSRRLKTMARWPPSTL 197
           GL  +G+T W+ +   L L  S+ L+ + RW P+ +
Sbjct: 61  GLRGKGLTHWLRAPFKLLLALSQALRALRRWQPAVV 96


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,488,987
Number of Sequences: 219361
Number of extensions: 1044549
Number of successful extensions: 3735
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 3478
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3723
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2628831825
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result