ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart53e07 |
|---|---|
| Clone Library Name | barley_pub |
>CIA30_ARATH (Q9LQI7) Probable complex I intermediate-associated protein 30| Length = 208 Score = 92.8 bits (229), Expect = 3e-19 Identities = 40/64 (62%), Positives = 54/64 (84%) Frame = +2 Query: 212 MSRLRALWQASVNATKRAVVWNSEDLFPPSERYIFNFNSKDEVKKWHLYSDSEYGGLSSA 391 MSR R+L QASVNATK+A+ WN E+ PP+E++IF F+SK+++KKWHLYSDSEYGG+ S Sbjct: 1 MSRFRSLLQASVNATKKALTWNVEEWVPPAEKHIFKFHSKEDLKKWHLYSDSEYGGVFSG 60 Query: 392 SLEI 403 +L + Sbjct: 61 NLSV 64
>CT012_MACFA (Q9GKS9) Protein C20orf12 homolog| Length = 606 Score = 32.0 bits (71), Expect = 0.58 Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 6/52 (11%) Frame = +3 Query: 93 RPCSTADPSHLPIQVTIRWPLPSDPRLVFSGSKGTSELS------PCRGCGR 230 R C T +P+HL VT LPS + SG K + + C CGR Sbjct: 141 RACGTGNPAHLRYCVTCEGALPSSQESICSGDKASPPPTQKGGTISCSRCGR 192
>CIA30_DROME (Q9VAI1) Probable complex I intermediate-associated protein 30,| mitochondrial precursor Length = 296 Score = 30.8 bits (68), Expect = 1.3 Identities = 15/42 (35%), Positives = 29/42 (69%), Gaps = 2/42 (4%) Frame = +2 Query: 287 LFPPSER-YIFNFNSKDEVKKWHLYSDSEYG-GLSSASLEIT 406 +F P E +F+F + D + KW + +D+++G G S+A+LE++ Sbjct: 82 VFRPGETDVVFDFKAPDVLDKWTVTTDADHGEGKSTATLELS 123
>CT012_HUMAN (Q9NVP4) Protein C20orf12| Length = 579 Score = 30.0 bits (66), Expect = 2.2 Identities = 18/52 (34%), Positives = 22/52 (42%), Gaps = 6/52 (11%) Frame = +3 Query: 93 RPCSTADPSHLPIQVTIRWPLPSDPRLVFSGSKGTSELS------PCRGCGR 230 R C T +P+HL VT LPS + SG K + C CGR Sbjct: 120 RACGTGNPAHLRYCVTCEGALPSSQESMCSGDKAPPPPTQKGGTISCYRCGR 171
>RBM10_RAT (P70501) RNA-binding protein 10 (RNA-binding motif protein 10)| (S1-1 protein) Length = 852 Score = 29.6 bits (65), Expect = 2.9 Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 6/82 (7%) Frame = -3 Query: 238 LPERPQPR---HGESSLVPLD---PEKTSLGSEGSGQRMVTWIGR*DGSAVEHGRTPDGC 77 +PE P+P+ +G S +D P + LGS+ G RM+ +G +GS + GR G Sbjct: 749 IPEPPEPKRRKYGGISTASVDFEQPTRDGLGSDNIGSRMLQAMGWKEGSGL--GRKKQGI 806 Query: 76 EAESLSPEAAGRRQRKGAEGLS 11 + + R GA G S Sbjct: 807 -VTPIEAQTRVRGSGLGARGSS 827
>RBM10_HUMAN (P98175) RNA-binding protein 10 (RNA-binding motif protein 10)| (DXS8237E) Length = 929 Score = 29.6 bits (65), Expect = 2.9 Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 6/82 (7%) Frame = -3 Query: 238 LPERPQPR---HGESSLVPLD---PEKTSLGSEGSGQRMVTWIGR*DGSAVEHGRTPDGC 77 +PE P+P+ +G S +D P + LGS+ G RM+ +G +GS + GR G Sbjct: 826 IPEPPEPKRRKYGGISTASVDFEQPTRDGLGSDNIGSRMLQAMGWKEGSGL--GRKKQGI 883 Query: 76 EAESLSPEAAGRRQRKGAEGLS 11 + + R GA G S Sbjct: 884 -VTPIEAQTRVRGSGLGARGSS 904
>YTHD1_MOUSE (P59326) YTH domain protein 1 (Dermatomyositis associated with| cancer putative autoantigen 1 homolog) (DACA-1 homolog) Length = 559 Score = 29.3 bits (64), Expect = 3.7 Identities = 21/79 (26%), Positives = 31/79 (39%), Gaps = 2/79 (2%) Frame = +3 Query: 15 KPSAPFRCRRPAASGESDSASQPSGVRPCSTADPSHLPIQVTI--RWPLPSDPRLVFSGS 188 K SAP + P A+ + +QP V+P P + Q + RW P + F S Sbjct: 282 KASAPQQTPSPQAAPQPQQVAQPLPVQPPPLVQPQYQSPQQPLQPRWVAPRNRNAAFGQS 341 Query: 189 KGTSELSPCRGCGRSGKLP 245 G + S G + P Sbjct: 342 GGANSDSNSVGNAQPTSAP 360
>GP149_HUMAN (Q86SP6) Probable G-protein coupled receptor 149 (G-protein coupled| receptor PGR10) Length = 731 Score = 28.9 bits (63), Expect = 4.9 Identities = 23/59 (38%), Positives = 28/59 (47%), Gaps = 2/59 (3%) Frame = +1 Query: 79 NRRASGRAPPPT--RLIFLSRSPSAGHSLRILGSSSPDPKVLVSFRHVEAAGALASFRE 249 +R AS PPT R++ LS + G SLR G SP + AAGA A RE Sbjct: 233 SRGASIPGTPPTAGRVVSLSPEDAPGPSLRRSGGCSPSSDTVFGPGAPAAAGAEACRRE 291
>PARP1_MOUSE (P11103) Poly [ADP-ribose] polymerase 1 (EC 2.4.2.30) (PARP-1)| (ADPRT) (NAD(+) ADP-ribosyltransferase 1) (Poly[ADP-ribose] synthetase 1) (msPARP) Length = 1012 Score = 28.9 bits (63), Expect = 4.9 Identities = 11/31 (35%), Positives = 19/31 (61%) Frame = +1 Query: 127 LSRSPSAGHSLRILGSSSPDPKVLVSFRHVE 219 +S+ P HS++ LG ++PDP ++ VE Sbjct: 936 ISKLPKGKHSVKGLGKTTPDPSASITLEGVE 966
>PARP1_CRIGR (Q9R152) Poly [ADP-ribose] polymerase 1 (EC 2.4.2.30) (PARP-1)| (ADPRT) (NAD(+) ADP-ribosyltransferase 1) (Poly[ADP-ribose] synthetase 1) Length = 1012 Score = 28.9 bits (63), Expect = 4.9 Identities = 11/31 (35%), Positives = 19/31 (61%) Frame = +1 Query: 127 LSRSPSAGHSLRILGSSSPDPKVLVSFRHVE 219 +S+ P HS++ LG ++PDP ++ VE Sbjct: 936 ISKLPKGKHSVKGLGKTTPDPSASITLEGVE 966
>YHL1_EBV (P03181) Hypothetical protein BHLF1| Length = 660 Score = 28.5 bits (62), Expect = 6.4 Identities = 26/94 (27%), Positives = 33/94 (35%), Gaps = 17/94 (18%) Frame = +3 Query: 15 KPSAPFRCRRPAASGESDSASQPSGVRP-----CSTADP------------SHLPIQVTI 143 +P+AP PAA G A+ PSG P ADP LP + Sbjct: 560 RPAAPGAPGTPAAPGPGGGAAVPSGATPHPERGSGPADPPAAARLPPERQEPRLPQDLAA 619 Query: 144 RWPLPSDPRLVFSGSKGTSELSPCRGCGRSGKLP 245 P+ P SG+ GC RS + P Sbjct: 620 AQRCPAGPPPTRSGAAAQRTHRRPPGCPRSARNP 653 Score = 28.5 bits (62), Expect = 6.4 Identities = 26/94 (27%), Positives = 33/94 (35%), Gaps = 17/94 (18%) Frame = +3 Query: 15 KPSAPFRCRRPAASGESDSASQPSGVRP-----CSTADP------------SHLPIQVTI 143 +P+AP PAA G A+ PSG P ADP LP + Sbjct: 435 RPAAPGAPGTPAAPGPGGGAAVPSGATPHPERGSGPADPPAAARLPPERQEPRLPQDLAA 494 Query: 144 RWPLPSDPRLVFSGSKGTSELSPCRGCGRSGKLP 245 P+ P SG+ GC RS + P Sbjct: 495 AQRCPAGPPPTRSGAAAQRTHRRPPGCPRSARNP 528 Score = 28.5 bits (62), Expect = 6.4 Identities = 26/94 (27%), Positives = 33/94 (35%), Gaps = 17/94 (18%) Frame = +3 Query: 15 KPSAPFRCRRPAASGESDSASQPSGVRP-----CSTADP------------SHLPIQVTI 143 +P+AP PAA G A+ PSG P ADP LP + Sbjct: 310 RPAAPGAPGTPAAPGPGGGAAVPSGATPHPERGSGPADPPAAARLPPERQEPRLPQDLAA 369 Query: 144 RWPLPSDPRLVFSGSKGTSELSPCRGCGRSGKLP 245 P+ P SG+ GC RS + P Sbjct: 370 AQRCPAGPPPTRSGAAAQRTHRRPPGCPRSARNP 403 Score = 28.5 bits (62), Expect = 6.4 Identities = 26/94 (27%), Positives = 33/94 (35%), Gaps = 17/94 (18%) Frame = +3 Query: 15 KPSAPFRCRRPAASGESDSASQPSGVRP-----CSTADP------------SHLPIQVTI 143 +P+AP PAA G A+ PSG P ADP LP + Sbjct: 185 RPAAPGAPGTPAAPGPGGGAAVPSGATPHPERGSGPADPPAAARLPPERQEPRLPQDLAA 244 Query: 144 RWPLPSDPRLVFSGSKGTSELSPCRGCGRSGKLP 245 P+ P SG+ GC RS + P Sbjct: 245 AQRCPAGPPPTRSGAAAQRTHRRPPGCPRSARNP 278
>TPO_HUMAN (P40225) Thrombopoietin precursor (Megakaryocyte colony-stimulating| factor) (Myeloproliferative leukemia virus oncogene ligand) (C-mpl ligand) (ML) (Megakaryocyte growth and development factor) (MGDF) Length = 353 Score = 28.5 bits (62), Expect = 6.4 Identities = 13/36 (36%), Positives = 20/36 (55%) Frame = +3 Query: 51 ASGESDSASQPSGVRPCSTADPSHLPIQVTIRWPLP 158 +SG SD+ S P ++P + P+H P +PLP Sbjct: 275 SSGTSDTGSLPPNLQPGYSPSPTHPPTGQYTLFPLP 310
>BCAR3_HUMAN (O75815) Breast cancer anti-estrogen resistance protein 3 (SH2| domain-containing protein 3B) (Novel SH2-containing protein 2) Length = 825 Score = 28.5 bits (62), Expect = 6.4 Identities = 22/76 (28%), Positives = 32/76 (42%), Gaps = 2/76 (2%) Frame = +3 Query: 24 APFRCRRPAASGESDSASQPSGVRPCSTADPSHLPIQVTIRWPLPSDPRLVFSGSKGTSE 203 +P RR ++ + A + S + C P P +V +PS P + E Sbjct: 375 SPAVVRRVSSDARAGEALRGSDSQLCPKPPPK--PCKVPFL-KVPSSPSAWLNSEANYCE 431 Query: 204 LSPC--RGCGRSGKLP 245 L+P GCGR KLP Sbjct: 432 LNPAFATGCGRGAKLP 447
>PRIA_RHORU (P05445) Primosomal protein N' (EC 3.6.1.-) (ATP-dependent helicase| priA) (Replication factor Y) Length = 811 Score = 28.1 bits (61), Expect = 8.3 Identities = 21/75 (28%), Positives = 28/75 (37%), Gaps = 13/75 (17%) Frame = +3 Query: 60 ESDSASQPSGVR-PCSTADPSHLPIQVTIRWPLP------------SDPRLVFSGSKGTS 200 E A PS P TA PS + + W P + L+F +G + Sbjct: 456 EEQKAPPPSPTASPSPTASPSPMARPARLGWLSPPLITAVEETLAAGEQVLLFLNRRGYA 515 Query: 201 ELSPCRGCGRSGKLP 245 L+ CR CG K P Sbjct: 516 PLTLCRSCGHRLKCP 530
>PARP1_BOVIN (P18493) Poly [ADP-ribose] polymerase 1 (EC 2.4.2.30) (PARP-1)| (ADPRT) (NAD(+) ADP-ribosyltransferase 1) (Poly[ADP-ribose] synthetase 1) Length = 1015 Score = 28.1 bits (61), Expect = 8.3 Identities = 15/68 (22%), Positives = 31/68 (45%) Frame = +1 Query: 127 LSRSPSAGHSLRILGSSSPDPKVLVSFRHVEAAGALASFRERYQESCCMEFRRFISTK*K 306 +S+ P HS++ LG ++PDP ++ VE ++C + + + Sbjct: 939 ISKLPKGKHSVKGLGKTTPDPSASITVDGVEVPLG-TGISSGVNDTCLLYNEYIVYDIAQ 997 Query: 307 IHLQFQFK 330 +HL++ K Sbjct: 998 VHLKYLLK 1005
>TAF6_RAT (Q63801) Transcription initiation factor TFIID subunit 6| (Transcription initiation factor TFIID 70 kDa subunit) (TAF(II)70) (TAFII-70) (TAFII-80) (TAFII80) (p80) Length = 678 Score = 28.1 bits (61), Expect = 8.3 Identities = 12/30 (40%), Positives = 19/30 (63%) Frame = +1 Query: 100 APPPTRLIFLSRSPSAGHSLRILGSSSPDP 189 +PPPT+ I +S S SA + ++L S+ P Sbjct: 532 SPPPTKFIVMSSSSSASSTQQVLSLSTSAP 561
>TAF6_MOUSE (Q62311) Transcription initiation factor TFIID subunit 6| (Transcription initiation factor TFIID 70 kDa subunit) (TAF(II)70) (TAFII-70) (TAFII-80) (TAFII80) (p80) Length = 678 Score = 28.1 bits (61), Expect = 8.3 Identities = 12/30 (40%), Positives = 19/30 (63%) Frame = +1 Query: 100 APPPTRLIFLSRSPSAGHSLRILGSSSPDP 189 +PPPT+ I +S S SA + ++L S+ P Sbjct: 532 SPPPTKFIVMSSSSSASSTQQVLSLSTSAP 561
>PARP1_RAT (P27008) Poly [ADP-ribose] polymerase 1 (EC 2.4.2.30) (PARP-1)| (ADPRT) (NAD(+) ADP-ribosyltransferase 1) (Poly[ADP-ribose] synthetase 1) Length = 1013 Score = 28.1 bits (61), Expect = 8.3 Identities = 11/31 (35%), Positives = 19/31 (61%) Frame = +1 Query: 127 LSRSPSAGHSLRILGSSSPDPKVLVSFRHVE 219 +S+ P HS++ LG ++PDP ++ VE Sbjct: 937 ISKLPKGKHSVKGLGKTAPDPSASITLDGVE 967
>PRLB_ACHLY (P27458) Beta-lytic metalloendopeptidase precursor (EC 3.4.24.32)| (Beta-lytic protease) Length = 374 Score = 28.1 bits (61), Expect = 8.3 Identities = 27/79 (34%), Positives = 35/79 (44%), Gaps = 15/79 (18%) Frame = -2 Query: 272 IQQLSW*RSRKLARAPAASTWR---KLTSTF----GSGEDEPR------IR--REWPADG 138 ++ SW AR PA S WR + TS G+G+ PR +R R A G Sbjct: 97 VRSASWRAPTASARRPARSRWRCASRCTSAIPTRQGAGDAGPRQSAAGAVRAFRRQRAGG 156 Query: 137 DLDRKMRRVGGGARPDARR 81 R+ RRV G RP +R Sbjct: 157 RAARR-RRVPAGLRPPVQR 174 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 60,417,041 Number of Sequences: 219361 Number of extensions: 1270104 Number of successful extensions: 4473 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 4300 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4472 length of database: 80,573,946 effective HSP length: 100 effective length of database: 58,637,846 effective search space used: 2169600302 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
