Clone Name | bart53e07 |
---|---|
Clone Library Name | barley_pub |
>dbj|AK065692.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013038H22, full insert sequence Length = 1067 Score = 228 bits (115), Expect = 1e-56 Identities = 184/207 (88%) Strand = Plus / Plus Query: 203 gctttcgccatgtcgaggctgcgggcgctctggcaagcttccgtgaacgctaccaagaga 262 ||||||||||||||||||||||||||||| |||||||| ||||| ||||| |||| | || Sbjct: 128 gctttcgccatgtcgaggctgcgggcgctgtggcaagcctccgttaacgccaccaggcga 187 Query: 263 gctgttgtatggaattcagaagatttatttccaccaagtgaaagatacatcttcaatttc 322 || |||| |||||||||||||| || | ||||||||||||| |||||||||||||| Sbjct: 188 gccattgtgtggaattcagaagacctaatcccaccaagtgaaaagtacatcttcaatttt 247 Query: 323 aattcaaaagatgaggtgaagaagtggcacttgtactcggattcagagtatggaggttta 382 ||||||||||||||| |||| | |||||||||||| || ||||| ||||||||||||||| Sbjct: 248 aattcaaaagatgagctgaaaaggtggcacttgtattcagattccgagtatggaggttta 307 Query: 383 tcatctgcatcactggagataactgat 409 |||||||||||| |||||||||||||| Sbjct: 308 tcatctgcatcattggagataactgat 334
>ref|NM_191854.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 192 Score = 155 bits (78), Expect = 1e-34 Identities = 144/166 (86%) Strand = Plus / Plus Query: 212 atgtcgaggctgcgggcgctctggcaagcttccgtgaacgctaccaagagagctgttgta 271 |||||||||||||||||||| |||||||| ||||| ||||| |||| | |||| |||| Sbjct: 1 atgtcgaggctgcgggcgctgtggcaagcctccgttaacgccaccaggcgagccattgtg 60 Query: 272 tggaattcagaagatttatttccaccaagtgaaagatacatcttcaatttcaattcaaaa 331 |||||||||||||| || | ||||||||||||| |||||||||||||| ||||||||| Sbjct: 61 tggaattcagaagacctaatcccaccaagtgaaaagtacatcttcaattttaattcaaaa 120 Query: 332 gatgaggtgaagaagtggcacttgtactcggattcagagtatggag 377 |||||| |||| | |||||||||||| || ||||| |||||||||| Sbjct: 121 gatgagctgaaaaggtggcacttgtattcagattccgagtatggag 166
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 113 bits (57), Expect = 5e-22 Identities = 99/113 (87%) Strand = Plus / Plus Query: 267 ttgtatggaattcagaagatttatttccaccaagtgaaagatacatcttcaatttcaatt 326 |||| |||||||||||||| || | ||||||||||||| |||||||||||||| |||| Sbjct: 30314766 ttgtgtggaattcagaagacctaatcccaccaagtgaaaagtacatcttcaattttaatt 30314825 Query: 327 caaaagatgaggtgaagaagtggcacttgtactcggattcagagtatggaggt 379 ||||||||||| |||| | |||||||||||| || ||||| |||||||||||| Sbjct: 30314826 caaaagatgagctgaaaaggtggcacttgtattcagattccgagtatggaggt 30314878 Score = 77.8 bits (39), Expect = 3e-11 Identities = 51/55 (92%) Strand = Plus / Plus Query: 203 gctttcgccatgtcgaggctgcgggcgctctggcaagcttccgtgaacgctacca 257 ||||||||||||||||||||||||||||| |||||||| ||||| ||||| |||| Sbjct: 30314293 gctttcgccatgtcgaggctgcgggcgctgtggcaagcctccgttaacgccacca 30314347 Score = 60.0 bits (30), Expect = 6e-06 Identities = 33/34 (97%) Strand = Plus / Plus Query: 376 aggtttatcatctgcatcactggagataactgat 409 ||||||||||||||||||| |||||||||||||| Sbjct: 30315874 aggtttatcatctgcatcattggagataactgat 30315907
>dbj|AP003343.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0042A10 Length = 146840 Score = 113 bits (57), Expect = 5e-22 Identities = 99/113 (87%) Strand = Plus / Plus Query: 267 ttgtatggaattcagaagatttatttccaccaagtgaaagatacatcttcaatttcaatt 326 |||| |||||||||||||| || | ||||||||||||| |||||||||||||| |||| Sbjct: 103085 ttgtgtggaattcagaagacctaatcccaccaagtgaaaagtacatcttcaattttaatt 103144 Query: 327 caaaagatgaggtgaagaagtggcacttgtactcggattcagagtatggaggt 379 ||||||||||| |||| | |||||||||||| || ||||| |||||||||||| Sbjct: 103145 caaaagatgagctgaaaaggtggcacttgtattcagattccgagtatggaggt 103197 Score = 77.8 bits (39), Expect = 3e-11 Identities = 51/55 (92%) Strand = Plus / Plus Query: 203 gctttcgccatgtcgaggctgcgggcgctctggcaagcttccgtgaacgctacca 257 ||||||||||||||||||||||||||||| |||||||| ||||| ||||| |||| Sbjct: 102612 gctttcgccatgtcgaggctgcgggcgctgtggcaagcctccgttaacgccacca 102666 Score = 60.0 bits (30), Expect = 6e-06 Identities = 33/34 (97%) Strand = Plus / Plus Query: 376 aggtttatcatctgcatcactggagataactgat 409 ||||||||||||||||||| |||||||||||||| Sbjct: 104193 aggtttatcatctgcatcattggagataactgat 104226
>dbj|AP002899.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0456A01 Length = 143710 Score = 113 bits (57), Expect = 5e-22 Identities = 99/113 (87%) Strand = Plus / Plus Query: 267 ttgtatggaattcagaagatttatttccaccaagtgaaagatacatcttcaatttcaatt 326 |||| |||||||||||||| || | ||||||||||||| |||||||||||||| |||| Sbjct: 493 ttgtgtggaattcagaagacctaatcccaccaagtgaaaagtacatcttcaattttaatt 552 Query: 327 caaaagatgaggtgaagaagtggcacttgtactcggattcagagtatggaggt 379 ||||||||||| |||| | |||||||||||| || ||||| |||||||||||| Sbjct: 553 caaaagatgagctgaaaaggtggcacttgtattcagattccgagtatggaggt 605 Score = 77.8 bits (39), Expect = 3e-11 Identities = 51/55 (92%) Strand = Plus / Plus Query: 203 gctttcgccatgtcgaggctgcgggcgctctggcaagcttccgtgaacgctacca 257 ||||||||||||||||||||||||||||| |||||||| ||||| ||||| |||| Sbjct: 20 gctttcgccatgtcgaggctgcgggcgctgtggcaagcctccgttaacgccacca 74 Score = 60.0 bits (30), Expect = 6e-06 Identities = 33/34 (97%) Strand = Plus / Plus Query: 376 aggtttatcatctgcatcactggagataactgat 409 ||||||||||||||||||| |||||||||||||| Sbjct: 1601 aggtttatcatctgcatcattggagataactgat 1634
>ref|NM_191855.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 735 Score = 60.0 bits (30), Expect = 6e-06 Identities = 33/34 (97%) Strand = Plus / Minus Query: 376 aggtttatcatctgcatcactggagataactgat 409 ||||||||||||||||||| |||||||||||||| Sbjct: 638 aggtttatcatctgcatcattggagataactgat 605
>gb|AC103783.2| Homo sapiens chromosome 8, clone RP11-664D7, complete sequence Length = 109941 Score = 48.1 bits (24), Expect = 0.023 Identities = 27/28 (96%) Strand = Plus / Minus Query: 319 tttcaattcaaaagatgaggtgaagaag 346 |||||||| ||||||||||||||||||| Sbjct: 84676 tttcaattaaaaagatgaggtgaagaag 84649
>gb|AY450543.1| Human rhinovirus 84 polyprotein mRNA, partial cds Length = 1356 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Plus Query: 301 tgaaagatacatcttcaatttc 322 |||||||||||||||||||||| Sbjct: 195 tgaaagatacatcttcaatttc 216
>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome Length = 4403837 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 211 catgtcgaggctgcgggcgctctgg 235 ||||||||||||||||||| ||||| Sbjct: 1726071 catgtcgaggctgcgggcggtctgg 1726095
>emb|BX842576.1| Mycobacterium tuberculosis H37Rv complete genome; segment 5/13 Length = 348264 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 211 catgtcgaggctgcgggcgctctgg 235 ||||||||||||||||||| ||||| Sbjct: 342874 catgtcgaggctgcgggcggtctgg 342898
>emb|BX248339.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 6/14 Length = 300050 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 211 catgtcgaggctgcgggcgctctgg 235 ||||||||||||||||||| ||||| Sbjct: 95930 catgtcgaggctgcgggcggtctgg 95954
>gb|AC118231.9| Mus musculus chromosome 5, clone RP23-462J24, complete sequence Length = 186083 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 314 ttcaatttcaattcaaaagat 334 ||||||||||||||||||||| Sbjct: 90338 ttcaatttcaattcaaaagat 90318
>gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, complete genome Length = 3570858 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 40 gccgacccgccgcctccggcg 60 ||||||||||||||||||||| Sbjct: 981098 gccgacccgccgcctccggcg 981078
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 32 tcgctgtcgccgacccgccgcctcc 56 |||| |||||||||||||||||||| Sbjct: 28451452 tcgccgtcgccgacccgccgcctcc 28451476
>dbj|AP004118.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1148_D05 Length = 155146 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 32 tcgctgtcgccgacccgccgcctcc 56 |||| |||||||||||||||||||| Sbjct: 75573 tcgccgtcgccgacccgccgcctcc 75597
>dbj|AP004786.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0017H11 Length = 158374 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 32 tcgctgtcgccgacccgccgcctcc 56 |||| |||||||||||||||||||| Sbjct: 20293 tcgccgtcgccgacccgccgcctcc 20317
>dbj|AP006375.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT32M04, TM0219, complete sequence Length = 72880 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 267 ttgtatggaattcagaagatttatt 291 |||||||| |||||||||||||||| Sbjct: 60628 ttgtatgggattcagaagatttatt 60604
>dbj|AP006094.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT39H01, TM0172, complete sequence Length = 127731 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 267 ttgtatggaattcagaagatttatt 291 |||||||| |||||||||||||||| Sbjct: 38304 ttgtatgggattcagaagatttatt 38280 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 267 ttgtatggaattcagaagatttatt 291 |||||||| |||||||||||||||| Sbjct: 26019 ttgtatgggattcagaagatttatt 25995
>gb|DQ167575.2| Capra hircus myostatin gene, complete cds Length = 5211 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 314 ttcaatttcaattcaaaaga 333 |||||||||||||||||||| Sbjct: 3080 ttcaatttcaattcaaaaga 3061
>gb|AY386264.1| Orf virus strain OV-SA00, complete genome Length = 139962 Score = 40.1 bits (20), Expect = 5.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 46 ccgccgcctccggcgagagcgactccgc 73 |||||||||||||||||| ||| ||||| Sbjct: 133503 ccgccgcctccggcgagatcgagtccgc 133476
>gb|AY386263.1| Orf virus strain OV-IA82, complete genome Length = 137241 Score = 40.1 bits (20), Expect = 5.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 46 ccgccgcctccggcgagagcgactccgc 73 |||||||||||||||||| ||| ||||| Sbjct: 132463 ccgccgcctccggcgagatcgagtccgc 132436
>ref|XM_817810.1| Trypanosoma brucei TREU927 chaperone protein DnaJ (Tb10.70.0170) partial mRNA Length = 825 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 60 gagagcgactccgcctcaca 79 |||||||||||||||||||| Sbjct: 746 gagagcgactccgcctcaca 727
>emb|AL607023.3| Human DNA sequence from clone RP11-65E10 on chromosome 10 Contains part of the gene for alpha-catenin-like protein (MGC26194) (VR22), complete sequence Length = 132396 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 304 aagatacatcttcaatttca 323 |||||||||||||||||||| Sbjct: 110111 aagatacatcttcaatttca 110130
>emb|AL031290.1|HS774I24 Human DNA sequence from clone RP4-774I24 on chromosome 1q24.1-24.3 Contains the 3' end of the PLAC3 gene for placenta-specific 3 (PLAC3) and the 3' end of the ASTN gene for astrotactin, complete sequence Length = 121780 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 311 atcttcaatttcaattcaaaagat 334 ||||||||||||||||||| |||| Sbjct: 106085 atcttcaatttcaattcaacagat 106108
>emb|BX324007.16| Zebrafish DNA sequence from clone CH211-233C16 in linkage group 16, complete sequence Length = 165294 Score = 40.1 bits (20), Expect = 5.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 304 aagatacatcttcaatttcaattcaaaa 331 ||||||||| ||||||||||| |||||| Sbjct: 80117 aagatacattttcaatttcaaatcaaaa 80144
>gb|DQ184476.1| Orf virus strain NZ2, complete genome Length = 137820 Score = 40.1 bits (20), Expect = 5.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 46 ccgccgcctccggcgagagcgactccgc 73 |||||||||||||||||| ||| ||||| Sbjct: 132742 ccgccgcctccggcgagatcgagtccgc 132715
>gb|AY186732.1| Orf virus strain D1701 ankyrin-repeat protein ANK-1 (ANK-1), interleukin 10 (IL-10), ankyrin-repeat protein ANK-2 (ANK-2), ankyrin-repeat protein ANK-3 (ANK-3), vaccinia virus F10L-like protein (F10L), vaccinia virus F9L-like protein (F9L), vascular endothelial growth factor-like protein (VEGF-E), and ORF3 genes, complete cds Length = 9979 Score = 40.1 bits (20), Expect = 5.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 46 ccgccgcctccggcgagagcgactccgc 73 |||||||||||||||||| ||| ||||| Sbjct: 6684 ccgccgcctccggcgagatcgagtccgc 6657
>gb|AY032689.1| Capra hircus myostatin (MSTN) gene, exons 2 and 3 and partial cds Length = 2584 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 314 ttcaatttcaattcaaaaga 333 |||||||||||||||||||| Sbjct: 461 ttcaatttcaattcaaaaga 442
>gb|AE010301.1| Leptospira interrogans serovar Lai str. 56601 chromosome II, complete sequence Length = 358943 Score = 40.1 bits (20), Expect = 5.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 318 atttcaattcaaaagatgaggtgaagaa 345 ||||||| |||||||| ||||||||||| Sbjct: 12478 atttcaaatcaaaagaggaggtgaagaa 12505
>gb|AF266758.1|AF266758 Ovis aries myostatin (MSTN) gene, exons 2 and 3 and partial cds Length = 2603 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 314 ttcaatttcaattcaaaaga 333 |||||||||||||||||||| Sbjct: 462 ttcaatttcaattcaaaaga 443
>emb|BX004808.5| Zebrafish DNA sequence from clone CH211-51B23 in linkage group 16, complete sequence Length = 184760 Score = 40.1 bits (20), Expect = 5.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 304 aagatacatcttcaatttcaattcaaaa 331 ||||||||| ||||||||||| |||||| Sbjct: 85785 aagatacattttcaatttcaaatcaaaa 85758
>gb|AE016824.1| Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130, chromosome II, complete sequence Length = 350181 Score = 40.1 bits (20), Expect = 5.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 318 atttcaattcaaaagatgaggtgaagaa 345 ||||||| |||||||| ||||||||||| Sbjct: 12452 atttcaaatcaaaagaggaggtgaagaa 12479
>gb|U29944.1|OVU29944 Orf virus protein kinase homolog and F9L homolog genes, complete cds Length = 2211 Score = 40.1 bits (20), Expect = 5.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 46 ccgccgcctccggcgagagcgactccgc 73 |||||||||||||||||| ||| ||||| Sbjct: 1026 ccgccgcctccggcgagatcgagtccgc 999 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,251,480 Number of Sequences: 3902068 Number of extensions: 3251480 Number of successful extensions: 58659 Number of sequences better than 10.0: 33 Number of HSP's better than 10.0 without gapping: 33 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 58485 Number of HSP's gapped (non-prelim): 174 length of query: 414 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 392 effective length of database: 17,147,199,772 effective search space: 6721702310624 effective search space used: 6721702310624 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)