ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart53e06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_479019.1| Oryza sativa (japonica cultivar-group), mRNA 170 2e-39
2dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 170 2e-39
3dbj|AP003915.4| Oryza sativa (japonica cultivar-group) genomic D... 170 2e-39
4dbj|AK066942.1| Oryza sativa (japonica cultivar-group) cDNA clon... 165 2e-37
5ref|XM_468774.1| Oryza sativa (japonica cultivar-group), mRNA 159 9e-36
6ref|XM_506917.1| PREDICTED Oryza sativa (japonica cultivar-group... 159 9e-36
7gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 159 9e-36
8gb|AC133398.4| Oryza sativa chromosome 3 BAC OSJNBa0083F15 genom... 159 9e-36
9dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 159 9e-36
10dbj|AK069737.1| Oryza sativa (japonica cultivar-group) cDNA clon... 159 9e-36
11ref|XM_323796.1| Neurospora crassa OR74A hypothetical protein (N... 42 1.5
12ref|XM_952428.1| Neurospora crassa OR74A hypothetical protein (N... 42 1.5
13ref|XM_504466.1| Yarrowia lipolytica CLIB122, YALI0E27412g predi... 42 1.5
14emb|BX908808.1| Neurospora crassa DNA linkage group IV Cosmid co... 42 1.5
15emb|CR382131.1| Yarrowia lipolytica chromosome E of strain CLIB ... 42 1.5
16gb|CP000024.1| Streptococcus thermophilus CNRZ1066, complete genome 40 6.0
17ref|NM_111567.2| Arabidopsis thaliana unknown protein AT3G06870 ... 40 6.0
18gb|BC081207.1| Xenopus laevis hypothetical protein LOC446942, mR... 40 6.0
19ref|NM_007993.1| Mus musculus fibrillin 1 (Fbn1), mRNA 40 6.0
20gb|CP000358.1| Deinococcus geothermalis DSM 11300 plasmid 1, com... 40 6.0
21gb|BC049930.1| Mus musculus cDNA clone IMAGE:5252102, partial cds 40 6.0
22gb|AC016827.7|ATAC016827 Arabidopsis thaliana chromosome III BAC... 40 6.0
23emb|AL157938.22| Human DNA sequence from clone RP11-544A12 on ch... 40 6.0
24gb|DQ351275.1| Streptomyces sp. NRRL 30748 meridamycin biosynthe... 40 6.0
25ref|NM_075132.2| Caenorhabditis elegans abnormal embryonic PARti... 40 6.0
26emb|BX832404.1|CNS09ZNW Arabidopsis thaliana Full-length cDNA Co... 40 6.0
27dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 40 6.0
28gb|CP000252.1| Syntrophus aciditrophicus SB, complete genome 40 6.0
29gb|AF160189.1|AF160189 Caenorhabditis elegans putative serine-th... 40 6.0
30emb|AL132863.1|CEY37H2A Caenorhabditis elegans YAC Y37H2A, compl... 40 6.0
31gb|AC171502.2| Mus musculus BAC clone RP23-242G4 from chromosome... 40 6.0
32gb|CP000023.1| Streptococcus thermophilus LMG 18311, complete ge... 40 6.0
33gb|U22493.1|MMU22493 Mus musculus fibrillin-1 (Fbn1) mRNA, compl... 40 6.0
34emb|AL731826.12| Mouse DNA sequence from clone RP23-123O12 on ch... 40 6.0 
>ref|XM_479019.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1416

 Score =  170 bits (86), Expect = 2e-39
 Identities = 137/154 (88%)
 Strand = Plus / Plus

                                                                       
Query: 294 aaatggtgctggtggtgaagcagcaccgctgcacgcactcggcgtcctgctcctgcacca 353
           |||||||||||||||||||||||||||| |||| ||||||||||  ||||   |||| ||
Sbjct: 302 aaatggtgctggtggtgaagcagcaccggtgcatgcactcggcgagctgcgtttgcatca 361

                                                                       
Query: 354 agggccacctcagcgaggacgcgctgttcctcgtcttccgccacatgaactggaacccca 413
           |||| |||||||||||||||||||||||||| ||||| || |||||||||||||||||||
Sbjct: 362 agggacacctcagcgaggacgcgctgttcctggtctttcgtcacatgaactggaacccca 421

                                             
Query: 414 ggctgatcgccaacctctcctgcgtctgcaagtg 447
           |||||||||||   ||||| ||||| ||||||||
Sbjct: 422 ggctgatcgccgtgctctcgtgcgtgtgcaagtg 455
to top
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score =  170 bits (86), Expect = 2e-39
 Identities = 137/154 (88%)
 Strand = Plus / Plus

                                                                            
Query: 294      aaatggtgctggtggtgaagcagcaccgctgcacgcactcggcgtcctgctcctgcacca 353
                |||||||||||||||||||||||||||| |||| ||||||||||  ||||   |||| ||
Sbjct: 24343281 aaatggtgctggtggtgaagcagcaccggtgcatgcactcggcgagctgcgtttgcatca 24343340

                                                                            
Query: 354      agggccacctcagcgaggacgcgctgttcctcgtcttccgccacatgaactggaacccca 413
                |||| |||||||||||||||||||||||||| ||||| || |||||||||||||||||||
Sbjct: 24343341 agggacacctcagcgaggacgcgctgttcctggtctttcgtcacatgaactggaacccca 24343400

                                                  
Query: 414      ggctgatcgccaacctctcctgcgtctgcaagtg 447
                |||||||||||   ||||| ||||| ||||||||
Sbjct: 24343401 ggctgatcgccgtgctctcgtgcgtgtgcaagtg 24343434
to top
>dbj|AP003915.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1579_C03
          Length = 122851

 Score =  170 bits (86), Expect = 2e-39
 Identities = 137/154 (88%)
 Strand = Plus / Plus

                                                                         
Query: 294   aaatggtgctggtggtgaagcagcaccgctgcacgcactcggcgtcctgctcctgcacca 353
             |||||||||||||||||||||||||||| |||| ||||||||||  ||||   |||| ||
Sbjct: 76474 aaatggtgctggtggtgaagcagcaccggtgcatgcactcggcgagctgcgtttgcatca 76533

                                                                         
Query: 354   agggccacctcagcgaggacgcgctgttcctcgtcttccgccacatgaactggaacccca 413
             |||| |||||||||||||||||||||||||| ||||| || |||||||||||||||||||
Sbjct: 76534 agggacacctcagcgaggacgcgctgttcctggtctttcgtcacatgaactggaacccca 76593

                                               
Query: 414   ggctgatcgccaacctctcctgcgtctgcaagtg 447
             |||||||||||   ||||| ||||| ||||||||
Sbjct: 76594 ggctgatcgccgtgctctcgtgcgtgtgcaagtg 76627
to top
>dbj|AK066942.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013088D22, full
           insert sequence
          Length = 1416

 Score =  165 bits (83), Expect = 2e-37
 Identities = 119/131 (90%)
 Strand = Plus / Plus

                                                                       
Query: 294 aaatggtgctggtggtgaagcagcaccgctgcacgcactcggcgtcctgctcctgcacca 353
           |||||||||||||||||||||||||||| |||| ||||||||||  ||||   |||| ||
Sbjct: 302 aaatggtgctggtggtgaagcagcaccggtgcatgcactcggcgagctgcgtttgcatca 361

                                                                       
Query: 354 agggccacctcagcgaggacgcgctgttcctcgtcttccgccacatgaactggaacccca 413
           |||| |||||||||||||||||||||||||| ||||| || |||||||||||||||||||
Sbjct: 362 agggacacctcagcgaggacgcgctgttcctggtctttcgtcacatgaactggaacccca 421

                      
Query: 414 ggctgatcgcc 424
           |||||||||||
Sbjct: 422 ggctgatcgcc 432
to top
>ref|XM_468774.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1089

 Score =  159 bits (80), Expect = 9e-36
 Identities = 134/152 (88%)
 Strand = Plus / Plus

                                                                       
Query: 296 atggtgctggtggtgaagcagcaccgctgcacgcactcggcgtcctgctcctgcaccaag 355
           ||||||||||||||||||||| |||||||||||||||| |||  ||||  ||||  ||||
Sbjct: 332 atggtgctggtggtgaagcagtaccgctgcacgcactccgcgagctgcctctgcctcaag 391

                                                                       
Query: 356 ggccacctcagcgaggacgcgctgttcctcgtcttccgccacatgaactggaaccccagg 415
           || ||| ||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct: 392 gggcacatcagcgaggacgcactgttcctcgtcttccgccacatgaactggaacccgagg 451

                                           
Query: 416 ctgatcgccaacctctcctgcgtctgcaagtg 447
            |||||||   | |||||||||||| ||||||
Sbjct: 452 atgatcgcgctcttctcctgcgtctccaagtg 483
to top
>ref|XM_506917.1| PREDICTED Oryza sativa (japonica cultivar-group), OSJNBa0083F15.24
           mRNA
          Length = 1185

 Score =  159 bits (80), Expect = 9e-36
 Identities = 134/152 (88%)
 Strand = Plus / Plus

                                                                       
Query: 296 atggtgctggtggtgaagcagcaccgctgcacgcactcggcgtcctgctcctgcaccaag 355
           ||||||||||||||||||||| |||||||||||||||| |||  ||||  ||||  ||||
Sbjct: 332 atggtgctggtggtgaagcagtaccgctgcacgcactccgcgagctgcctctgcctcaag 391

                                                                       
Query: 356 ggccacctcagcgaggacgcgctgttcctcgtcttccgccacatgaactggaaccccagg 415
           || ||| ||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct: 392 gggcacatcagcgaggacgcactgttcctcgtcttccgccacatgaactggaacccgagg 451

                                           
Query: 416 ctgatcgccaacctctcctgcgtctgcaagtg 447
            |||||||   | |||||||||||| ||||||
Sbjct: 452 atgatcgcgctcttctcctgcgtctccaagtg 483
to top
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  159 bits (80), Expect = 9e-36
 Identities = 134/152 (88%)
 Strand = Plus / Minus

                                                                            
Query: 296      atggtgctggtggtgaagcagcaccgctgcacgcactcggcgtcctgctcctgcaccaag 355
                ||||||||||||||||||||| |||||||||||||||| |||  ||||  ||||  ||||
Sbjct: 17655930 atggtgctggtggtgaagcagtaccgctgcacgcactccgcgagctgcctctgcctcaag 17655871

                                                                            
Query: 356      ggccacctcagcgaggacgcgctgttcctcgtcttccgccacatgaactggaaccccagg 415
                || ||| ||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct: 17655870 gggcacatcagcgaggacgcactgttcctcgtcttccgccacatgaactggaacccgagg 17655811

                                                
Query: 416      ctgatcgccaacctctcctgcgtctgcaagtg 447
                 |||||||   | |||||||||||| ||||||
Sbjct: 17655810 atgatcgcgctcttctcctgcgtctccaagtg 17655779
to top
>gb|AC133398.4| Oryza sativa chromosome 3 BAC OSJNBa0083F15 genomic sequence, complete
              sequence
          Length = 136916

 Score =  159 bits (80), Expect = 9e-36
 Identities = 134/152 (88%)
 Strand = Plus / Plus

                                                                          
Query: 296    atggtgctggtggtgaagcagcaccgctgcacgcactcggcgtcctgctcctgcaccaag 355
              ||||||||||||||||||||| |||||||||||||||| |||  ||||  ||||  ||||
Sbjct: 128077 atggtgctggtggtgaagcagtaccgctgcacgcactccgcgagctgcctctgcctcaag 128136

                                                                          
Query: 356    ggccacctcagcgaggacgcgctgttcctcgtcttccgccacatgaactggaaccccagg 415
              || ||| ||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct: 128137 gggcacatcagcgaggacgcactgttcctcgtcttccgccacatgaactggaacccgagg 128196

                                              
Query: 416    ctgatcgccaacctctcctgcgtctgcaagtg 447
               |||||||   | |||||||||||| ||||||
Sbjct: 128197 atgatcgcgctcttctcctgcgtctccaagtg 128228
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  159 bits (80), Expect = 9e-36
 Identities = 134/152 (88%)
 Strand = Plus / Minus

                                                                            
Query: 296      atggtgctggtggtgaagcagcaccgctgcacgcactcggcgtcctgctcctgcaccaag 355
                ||||||||||||||||||||| |||||||||||||||| |||  ||||  ||||  ||||
Sbjct: 17649471 atggtgctggtggtgaagcagtaccgctgcacgcactccgcgagctgcctctgcctcaag 17649412

                                                                            
Query: 356      ggccacctcagcgaggacgcgctgttcctcgtcttccgccacatgaactggaaccccagg 415
                || ||| ||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct: 17649411 gggcacatcagcgaggacgcactgttcctcgtcttccgccacatgaactggaacccgagg 17649352

                                                
Query: 416      ctgatcgccaacctctcctgcgtctgcaagtg 447
                 |||||||   | |||||||||||| ||||||
Sbjct: 17649351 atgatcgcgctcttctcctgcgtctccaagtg 17649320
to top
>dbj|AK069737.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023030O19, full
           insert sequence
          Length = 1424

 Score =  159 bits (80), Expect = 9e-36
 Identities = 134/152 (88%)
 Strand = Plus / Plus

                                                                       
Query: 296 atggtgctggtggtgaagcagcaccgctgcacgcactcggcgtcctgctcctgcaccaag 355
           ||||||||||||||||||||| |||||||||||||||| |||  ||||  ||||  ||||
Sbjct: 353 atggtgctggtggtgaagcagtaccgctgcacgcactccgcgagctgcctctgcctcaag 412

                                                                       
Query: 356 ggccacctcagcgaggacgcgctgttcctcgtcttccgccacatgaactggaaccccagg 415
           || ||| ||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct: 413 gggcacatcagcgaggacgcactgttcctcgtcttccgccacatgaactggaacccgagg 472

                                           
Query: 416 ctgatcgccaacctctcctgcgtctgcaagtg 447
            |||||||   | |||||||||||| ||||||
Sbjct: 473 atgatcgcgctcttctcctgcgtctccaagtg 504
to top
>ref|XM_323796.1| Neurospora crassa OR74A hypothetical protein (NCU04444.1) partial
            mRNA
          Length = 5544

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 420  tcgccaacctctcctgcgtct 440
            |||||||||||||||||||||
Sbjct: 5470 tcgccaacctctcctgcgtct 5450
to top
>ref|XM_952428.1| Neurospora crassa OR74A hypothetical protein (NCU04444.1) partial
            mRNA
          Length = 5544

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 420  tcgccaacctctcctgcgtct 440
            |||||||||||||||||||||
Sbjct: 5470 tcgccaacctctcctgcgtct 5450
to top
>ref|XM_504466.1| Yarrowia lipolytica CLIB122, YALI0E27412g predicted mRNA
          Length = 600

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 291 tgaaaatggtgctggtggtga 311
           |||||||||||||||||||||
Sbjct: 254 tgaaaatggtgctggtggtga 274
to top
>emb|BX908808.1| Neurospora crassa DNA linkage group IV Cosmid contig G21B4
          Length = 177225

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 420   tcgccaacctctcctgcgtct 440
             |||||||||||||||||||||
Sbjct: 55491 tcgccaacctctcctgcgtct 55511
to top
>emb|CR382131.1| Yarrowia lipolytica chromosome E of strain CLIB 122 of Yarrowia lipolytica
          Length = 4224103

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 291     tgaaaatggtgctggtggtga 311
               |||||||||||||||||||||
Sbjct: 3245111 tgaaaatggtgctggtggtga 3245091
to top
>gb|CP000024.1| Streptococcus thermophilus CNRZ1066, complete genome
          Length = 1796226

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 280    gatttgactgctgaaaatggtgct 303
              ||||||||||||||||||| ||||
Sbjct: 152492 gatttgactgctgaaaatgttgct 152515
to top
>ref|NM_111567.2| Arabidopsis thaliana unknown protein AT3G06870 mRNA, complete cds
          Length = 931

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 295 aatggtgctggtggtgaagcagca 318
           ||||||| ||||||||||||||||
Sbjct: 282 aatggtggtggtggtgaagcagca 259
to top
>gb|BC081207.1| Xenopus laevis hypothetical protein LOC446942, mRNA (cDNA clone
           IMAGE:6949029), partial cds
          Length = 1471

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 288 tgctgaaaatggtgctggtggtga 311
           ||||||||||||||||| ||||||
Sbjct: 200 tgctgaaaatggtgctgttggtga 177
to top
>ref|NM_007993.1| Mus musculus fibrillin 1 (Fbn1), mRNA
          Length = 9830

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 68  cactcgctccgccaccgccgcgcc 91
           ||||||||||||| ||||||||||
Sbjct: 204 cactcgctccgccgccgccgcgcc 181
to top
>gb|CP000358.1| Deinococcus geothermalis DSM 11300 plasmid 1, complete sequence
          Length = 574126

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 74     ctccgccaccgccgcgcccc 93
              ||||||||||||||||||||
Sbjct: 267819 ctccgccaccgccgcgcccc 267838
to top
>gb|BC049930.1| Mus musculus cDNA clone IMAGE:5252102, partial cds
          Length = 1270

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 68  cactcgctccgccaccgccgcgcc 91
           ||||||||||||| ||||||||||
Sbjct: 380 cactcgctccgccgccgccgcgcc 403
to top
>gb|AC016827.7|ATAC016827 Arabidopsis thaliana chromosome III BAC F17A9 genomic sequence,
            complete sequence
          Length = 90142

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 295  aatggtgctggtggtgaagcagca 318
            ||||||| ||||||||||||||||
Sbjct: 7772 aatggtggtggtggtgaagcagca 7795
to top
>emb|AL157938.22| Human DNA sequence from clone RP11-544A12 on chromosome 9q34.13-34.3
              Contains the 3' end of the LAMC3 gene for laminin gamma 3,
              the gene for ionized calcium binding adaptor (IBA2), the
              NUP214 gene for nucleoporin 214kDa, a novel gene, a
              ribosomal protein L13a (RPL13A) pseudogene, the gene for a
              novel protein (FLJ00024) and four CpG islands, complete
              sequence
          Length = 197019

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 241    ggggcgcatggggaggtagg 260
              ||||||||||||||||||||
Sbjct: 179300 ggggcgcatggggaggtagg 179281
to top
>gb|DQ351275.1| Streptomyces sp. NRRL 30748 meridamycin biosynthetic gene cluster and
             flanking regions
          Length = 116831

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 373   cgcgctgttcctcgtcttcc 392
             ||||||||||||||||||||
Sbjct: 16589 cgcgctgttcctcgtcttcc 16570
to top
>ref|NM_075132.2| Caenorhabditis elegans abnormal embryonic PARtitioning of cytoplasm
            family member (par-4) (par-4) mRNA, complete cds
          Length = 2328

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 285  gactgctgaaaatggtgctg 304
            ||||||||||||||||||||
Sbjct: 1724 gactgctgaaaatggtgctg 1743
to top
>emb|BX832404.1|CNS09ZNW Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH70ZE04 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1480

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 295 aatggtgctggtggtgaagcagca 318
           ||||||| ||||||||||||||||
Sbjct: 937 aatggtggtggtggtgaagcagca 960
to top
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 331     ctcggcgtcctgctcctgca 350
               ||||||||||||||||||||
Sbjct: 5715117 ctcggcgtcctgctcctgca 5715098
to top
>gb|CP000252.1| Syntrophus aciditrophicus SB, complete genome
          Length = 3179300

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 285     gactgctgaaaatggtgctggtgg 308
               ||||||||||||||| ||||||||
Sbjct: 3172685 gactgctgaaaatggggctggtgg 3172662
to top
>gb|AF160189.1|AF160189 Caenorhabditis elegans putative serine-threonine kinase PAR-4 (par-4)
            mRNA, complete cds
          Length = 2351

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 285  gactgctgaaaatggtgctg 304
            ||||||||||||||||||||
Sbjct: 1747 gactgctgaaaatggtgctg 1766
to top
>emb|AL132863.1|CEY37H2A Caenorhabditis elegans YAC Y37H2A, complete sequence
          Length = 40560

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 285  gactgctgaaaatggtgctg 304
            ||||||||||||||||||||
Sbjct: 2147 gactgctgaaaatggtgctg 2166
to top
>gb|AC171502.2| Mus musculus BAC clone RP23-242G4 from chromosome 6, complete sequence
          Length = 209147

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 378    tgttcctcgtcttccgccacatgaactg 405
              ||||||||||||||| |||| |||||||
Sbjct: 137835 tgttcctcgtcttcctccacttgaactg 137862
to top
>gb|CP000023.1| Streptococcus thermophilus LMG 18311, complete genome
          Length = 1796846

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 280    gatttgactgctgaaaatggtgct 303
              ||||||||||||||||||| ||||
Sbjct: 152487 gatttgactgctgaaaatgttgct 152510
to top
>gb|U22493.1|MMU22493 Mus musculus fibrillin-1 (Fbn1) mRNA, complete cds
          Length = 9830

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 68  cactcgctccgccaccgccgcgcc 91
           ||||||||||||| ||||||||||
Sbjct: 204 cactcgctccgccgccgccgcgcc 181
to top
>emb|AL731826.12| Mouse DNA sequence from clone RP23-123O12 on chromosome 2, complete
             sequence
          Length = 194661

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 347   tgcaccaagggccacctcagcgag 370
             |||| |||||||||||||||||||
Sbjct: 70178 tgcagcaagggccacctcagcgag 70155


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,152,568
Number of Sequences: 3902068
Number of extensions: 3152568
Number of successful extensions: 72586
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 72180
Number of HSP's gapped (non-prelim): 406
length of query: 447
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 425
effective length of database: 17,147,199,772
effective search space: 7287559903100
effective search space used: 7287559903100
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top