>gb|AF471576.1| Homo sapiens clone 46-67m Ig heavy chain variable region, VH3
           family mRNA, partial cds
          Length = 375

 Score = 46.1 bits (23), Expect = 0.020
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 8   gccaagaatacactgtatttgca 30
           |||||||||||||||||||||||
Sbjct: 223 gccaagaatacactgtatttgca 245

>emb|AJ297916.1|LES297916 Lycopersicon esculentum mRNA for B1-type cyclin dependent kinase
           (cdkB1 gene)
          Length = 1261

 Score = 42.1 bits (21), Expect = 0.30
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 22  gtatttgcatactgatcttaagaaa 46
           ||||||| |||||||||||||||||
Sbjct: 348 gtatttggatactgatcttaagaaa 372

>gb|AC167540.2| Mus musculus chromosome 19, clone wi1-1794D9, complete sequence
          Length = 45645

 Score = 40.1 bits (20), Expect = 1.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 77    ctttgggggttcatgaccca 96
             ||||||||||||||||||||
Sbjct: 12452 ctttgggggttcatgaccca 12471

>gb|AC131756.3| Mus musculus BAC clone RP24-199J23 from chromosome 19, complete
            sequence
          Length = 175604

 Score = 40.1 bits (20), Expect = 1.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 77   ctttgggggttcatgaccca 96
            ||||||||||||||||||||
Sbjct: 9390 ctttgggggttcatgaccca 9371

>emb|BX649495.8| Zebrafish DNA sequence from clone DKEY-177B16 in linkage group 2,
             complete sequence
          Length = 81705

 Score = 40.1 bits (20), Expect = 1.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 3     ttgtggccaagaatacactgtatt 26
             ||||||||||||||||||| ||||
Sbjct: 57579 ttgtggccaagaatacactttatt 57602

>gb|AC116853.12| Mus musculus chromosome 1, clone RP24-400M20, complete sequence
          Length = 188514

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 41    aagaaaattatagacgaataata 63
             ||||||||||||||| |||||||
Sbjct: 99319 aagaaaattatagaccaataata 99297

>gb|AC158552.5| Mus musculus chromosome 3, clone RP23-97D22, complete sequence
          Length = 235709

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 41     aagaaaattatagacgaataata 63
              |||||||||||||| ||||||||
Sbjct: 141339 aagaaaattatagatgaataata 141317

>gb|AC099468.9| Rattus norvegicus 1 BAC CH230-37P5 (Children's Hospital Oakland
             Research Institute Rat (BN/SsNHsd/MCW) BAC library)
             complete sequence
          Length = 212177

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 1     tattgtggccaagaataca 19
             |||||||||||||||||||
Sbjct: 30305 tattgtggccaagaataca 30323

>gb|AC147633.3| Mus musculus BAC clone RP23-302B3 from chromosome 13, complete sequence
          Length = 218640

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 30     atactgatcttaagaaaat 48
              |||||||||||||||||||
Sbjct: 113709 atactgatcttaagaaaat 113691

>gb|AC121880.2| Mus musculus BAC clone RP24-132E6 from 13, complete sequence
          Length = 143546

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 30   atactgatcttaagaaaat 48
            |||||||||||||||||||
Sbjct: 5824 atactgatcttaagaaaat 5842

>ref|XM_725788.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY02928)
           partial mRNA
          Length = 930

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 40  taagaaaattatagacgaa 58
           |||||||||||||||||||
Sbjct: 387 taagaaaattatagacgaa 405

>gb|DQ073596.1| Homo sapiens clone T334 immunoglobulin heavy chain variable region
           gene, partial cds
          Length = 345

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 8   gccaagaatacactgtatttgca 30
           |||||||| ||||||||||||||
Sbjct: 206 gccaagaacacactgtatttgca 228

>gb|AC023206.6| Homo sapiens chromosome 11, clone RP11-797J4, complete sequence
          Length = 208561

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 31     tactgatcttaagaaaatt 49
              |||||||||||||||||||
Sbjct: 151545 tactgatcttaagaaaatt 151563

>gb|AC155833.10| Mus musculus 10 BAC RP24-405O10 (Roswell Park Cancer Institute
             (C57BL/6J Male) Mouse BAC Library) complete sequence
          Length = 176338

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 20    ctgtatttgcatactgatc 38
             |||||||||||||||||||
Sbjct: 91496 ctgtatttgcatactgatc 91478

>gb|AC157018.6| Mus musculus 10 BAC RP24-414A19 (Roswell Park Cancer Institute
             (C57BL/6J Male) Mouse BAC Library) complete sequence
          Length = 146007

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 74    ggcctttgggggttcatga 92
             |||||||||||||||||||
Sbjct: 92882 ggcctttgggggttcatga 92864

>dbj|AP006346.1| Marsupenaeus japonicus mitochondrial DNA, complete genome
          Length = 15968

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 87   tcatgacccatattagcta 105
            |||||||||||||||||||
Sbjct: 9625 tcatgacccatattagcta 9643

>dbj|AB092101.1| Camelus dromedarius IgVH mRNA for immunoglobulin heavy chain VHDJ
           region, partial cds, clone:YA0472H
          Length = 363

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 8   gccaagaatacactgtatttgca 30
           |||||||| ||||||||||||||
Sbjct: 223 gccaagaacacactgtatttgca 245

>emb|BX294130.5| Zebrafish DNA sequence from clone DKEY-263O22 in linkage group 19,
              complete sequence
          Length = 205973

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 19     actgtatttgcatactgat 37
              |||||||||||||||||||
Sbjct: 173579 actgtatttgcatactgat 173561

>gb|AE015924.1| Porphyromonas gingivalis W83, complete genome
          Length = 2343476

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 76      cctttgggggttcatgacc 94
               |||||||||||||||||||
Sbjct: 1164728 cctttgggggttcatgacc 1164710

>emb|AL953896.11| Zebrafish DNA sequence from clone CH211-119O8, complete sequence
          Length = 158018

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 3     ttgtggccaagaatacact 21
             |||||||||||||||||||
Sbjct: 45477 ttgtggccaagaatacact 45495

>emb|AJ544702.1|HSA544702 Homo sapiens variable region of IGHV3-74 gene, isolate 4, clone 1
          Length = 326

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 8   gccaagaatacactgtatttgca 30
           |||||||| ||||||||||||||
Sbjct: 210 gccaagaacacactgtatttgca 232

>gb|U92708.1|HSU92708 Human rearranged immunoglobulin heavy chain (A5VH3) gene, partial
          cds
          Length = 146

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                 
Query: 8  gccaagaatacactgtatttgca 30
          ||||||||| |||||||||||||
Sbjct: 39 gccaagaattcactgtatttgca 61

>emb|Z80685.1|HSZ80685 H.sapiens BF2N3-g3B10 gene for immunoglobulin heavy chain variable
           region
          Length = 300

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 8   gccaagaatacactgtatttgca 30
           ||||||||| |||||||||||||
Sbjct: 190 gccaagaattcactgtatttgca 212

>emb|AJ536050.1|HSA536050 Homo sapiens partial mRNA for immunoglobulin heavy chain variable
           region (IGHV gene), case 1, variant tumor clone 5
          Length = 378

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 8   gccaagaatacactgtatttgca 30
           |||||||||||||||||| ||||
Sbjct: 223 gccaagaatacactgtatctgca 245

>emb|AJ536049.1|HSA536049 Homo sapiens partial mRNA for immunoglobulin heavy chain variable
           region (IGHV gene), case 1, variant tumor clone 4
          Length = 378

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 8   gccaagaatacactgtatttgca 30
           |||||||||||||||||| ||||
Sbjct: 223 gccaagaatacactgtatctgca 245

>emb|AJ536048.1|HSA536048 Homo sapiens partial mRNA for immunoglobulin heavy chain variable
           region (IGHV gene), case 1, variant tumor clone 3
          Length = 378

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 8   gccaagaatacactgtatttgca 30
           |||||||||||||||||| ||||
Sbjct: 223 gccaagaatacactgtatctgca 245

>emb|AJ536047.1|HSA536047 Homo sapiens partial mRNA for immunoglobulin heavy chain variable
           region (IGHV gene), case 1, variant tumor clone 2
          Length = 378

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 8   gccaagaatacactgtatttgca 30
           |||||||||||||||||| ||||
Sbjct: 223 gccaagaatacactgtatctgca 245

>emb|AJ536046.1|HSA536046 Homo sapiens partial mRNA for immunoglobulin heavy chain variable
           region (IGHV gene), case 1, variant tumor clone 1
          Length = 378

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 8   gccaagaatacactgtatttgca 30
           |||||||||||||||||| ||||
Sbjct: 223 gccaagaatacactgtatctgca 245

>emb|AJ536045.1|HSA536045 Homo sapiens partial mRNA for immunoglobulin heavy chain variable
           region (IGHV gene), case 1, predominant tumor clone
          Length = 378

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 8   gccaagaatacactgtatttgca 30
           |||||||||||||||||| ||||
Sbjct: 223 gccaagaatacactgtatctgca 245

>emb|AJ487500.1|HSA487500 Homo sapiens partial mRNA for immunoglobulin heavy chain variable
           region (IGHV gene), clone slvl16
          Length = 284

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 8   gccaagaatacactgtatttgca 30
           ||||||||| |||||||||||||
Sbjct: 153 gccaagaattcactgtatttgca 175

>gb|L26961.1|HUMTSHRD Human immunoglobulin heavy-chain VH-D-JH rearrangement encoding
           thyrotropin receptor
          Length = 566

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 8   gccaagaatacactgtatttgca 30
           ||||||||| |||||||||||||
Sbjct: 423 gccaagaattcactgtatttgca 445

>gb|U09067.1|HSU09067 Human immunoglobulin heavy chain, V-region (SPH1.6) mRNA, partial
           cds
          Length = 294

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 8   gccaagaatacactgtatttgca 30
           ||||||||||| |||||||||||
Sbjct: 223 gccaagaataccctgtatttgca 245


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 930,923
Number of Sequences: 3902068
Number of extensions: 930923
Number of successful extensions: 66432
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 66382
Number of HSP's gapped (non-prelim): 50
length of query: 106
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 85
effective length of database: 17,151,101,840
effective search space: 1457843656400
effective search space used: 1457843656400
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)