ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bart53e02 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_473891.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 960 Score = 434 bits (219), Expect = e-118 Identities = 309/339 (91%) Strand = Plus / Plus Query: 114 ggcggtggagcgggcgcacgagctctaccggggcggccgccaccgggaggcgctggagct 173 ||||||||||| ||||||||||||||||||||| || || |||||||| ||||| ||||| Sbjct: 12 ggcggtggagcaggcgcacgagctctaccggggagggcgacaccgggacgcgctcgagct 71 Query: 174 ctactcggcggcgctggcggccgcccggggccacgcgcagcgcatcgccctgcacagcaa 233 ||| |||||||||||||||| || ||||| | ||||||||||||||| ||||||||||| Sbjct: 72 gtacacggcggcgctggcggcggcgcggggacccgcgcagcgcatcgcgctgcacagcaa 131 Query: 234 ccgcgccgcctgctacctcaagctccacgacttccacaaggccgcagaagagtgcacatc 293 ||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 132 ccgcgccgcgtgctacctcaagctccacgacttccacaaggctgcagaagagtgcacatc 191 Query: 294 tgtcctcgagttggacaccgagcatgctggagctctcatgctacgtgcccagactcttgt 353 |||||| |||||||| | ||||||||||||||||||||| ||||||| ||||| ||||| Sbjct: 192 tgtccttgagttggatagggagcatgctggagctctcatgttacgtgcacagacacttgt 251 Query: 354 cactctaaaggattaccagtccgctctatttgatgtaaaccggctaattgagataaatcc 413 |||||| |||||||||||||| |||||||||||||| ||| |||| |||||||||||||| Sbjct: 252 cactctgaaggattaccagtcagctctatttgatgtgaacaggctgattgagataaatcc 311 Query: 414 atcctctgaagtatatcggaaccttcatgcgcgactgaa 452 || |||||||||||||||||||||||||| |||||||| Sbjct: 312 gtcatctgaagtatatcggaaccttcatgcacgactgaa 350
>emb|AL662950.2|OSJN00152 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0008M17, complete sequence Length = 133279 Score = 232 bits (117), Expect = 8e-58 Identities = 165/181 (91%) Strand = Plus / Minus Query: 272 aggccgcagaagagtgcacatctgtcctcgagttggacaccgagcatgctggagctctca 331 |||| ||||||||||||||||||||||| |||||||| | ||||||||||||||||||| Sbjct: 116916 aggctgcagaagagtgcacatctgtccttgagttggatagggagcatgctggagctctca 116857 Query: 332 tgctacgtgcccagactcttgtcactctaaaggattaccagtccgctctatttgatgtaa 391 || ||||||| ||||| ||||||||||| |||||||||||||| |||||||||||||| | Sbjct: 116856 tgttacgtgcacagacacttgtcactctgaaggattaccagtcagctctatttgatgtga 116797 Query: 392 accggctaattgagataaatccatcctctgaagtatatcggaaccttcatgcgcgactga 451 || |||| |||||||||||||| || |||||||||||||||||||||||||| ||||||| Sbjct: 116796 acaggctgattgagataaatccgtcatctgaagtatatcggaaccttcatgcacgactga 116737 Query: 452 a 452 | Sbjct: 116736 a 116736 Score = 208 bits (105), Expect = 1e-50 Identities = 147/161 (91%) Strand = Plus / Minus Query: 114 ggcggtggagcgggcgcacgagctctaccggggcggccgccaccgggaggcgctggagct 173 ||||||||||| ||||||||||||||||||||| || || |||||||| ||||| ||||| Sbjct: 117951 ggcggtggagcaggcgcacgagctctaccggggagggcgacaccgggacgcgctcgagct 117892 Query: 174 ctactcggcggcgctggcggccgcccggggccacgcgcagcgcatcgccctgcacagcaa 233 ||| |||||||||||||||| || ||||| | ||||||||||||||| ||||||||||| Sbjct: 117891 gtacacggcggcgctggcggcggcgcggggacccgcgcagcgcatcgcgctgcacagcaa 117832 Query: 234 ccgcgccgcctgctacctcaagctccacgacttccacaagg 274 ||||||||| ||||||||||||||||||||||||||||||| Sbjct: 117831 ccgcgccgcgtgctacctcaagctccacgacttccacaagg 117791
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 232 bits (117), Expect = 8e-58 Identities = 165/181 (91%) Strand = Plus / Minus Query: 272 aggccgcagaagagtgcacatctgtcctcgagttggacaccgagcatgctggagctctca 331 |||| ||||||||||||||||||||||| |||||||| | ||||||||||||||||||| Sbjct: 31295314 aggctgcagaagagtgcacatctgtccttgagttggatagggagcatgctggagctctca 31295255 Query: 332 tgctacgtgcccagactcttgtcactctaaaggattaccagtccgctctatttgatgtaa 391 || ||||||| ||||| ||||||||||| |||||||||||||| |||||||||||||| | Sbjct: 31295254 tgttacgtgcacagacacttgtcactctgaaggattaccagtcagctctatttgatgtga 31295195 Query: 392 accggctaattgagataaatccatcctctgaagtatatcggaaccttcatgcgcgactga 451 || |||| |||||||||||||| || |||||||||||||||||||||||||| ||||||| Sbjct: 31295194 acaggctgattgagataaatccgtcatctgaagtatatcggaaccttcatgcacgactga 31295135 Query: 452 a 452 | Sbjct: 31295134 a 31295134 Score = 208 bits (105), Expect = 1e-50 Identities = 147/161 (91%) Strand = Plus / Minus Query: 114 ggcggtggagcgggcgcacgagctctaccggggcggccgccaccgggaggcgctggagct 173 ||||||||||| ||||||||||||||||||||| || || |||||||| ||||| ||||| Sbjct: 31296349 ggcggtggagcaggcgcacgagctctaccggggagggcgacaccgggacgcgctcgagct 31296290 Query: 174 ctactcggcggcgctggcggccgcccggggccacgcgcagcgcatcgccctgcacagcaa 233 ||| |||||||||||||||| || ||||| | ||||||||||||||| ||||||||||| Sbjct: 31296289 gtacacggcggcgctggcggcggcgcggggacccgcgcagcgcatcgcgctgcacagcaa 31296230 Query: 234 ccgcgccgcctgctacctcaagctccacgacttccacaagg 274 ||||||||| ||||||||||||||||||||||||||||||| Sbjct: 31296229 ccgcgccgcgtgctacctcaagctccacgacttccacaagg 31296189 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 179 cggcggcgctggcggccgcccggg 202 ||||||||||||||||||| |||| Sbjct: 22283540 cggcggcgctggcggccgcgcggg 22283563
>gb|AY017925.1| Oryza sativa microsatellite MRG0250 containing (AG)X16, closest to marker RG476X, genomic sequence Length = 232 Score = 119 bits (60), Expect = 8e-24 Identities = 66/68 (97%) Strand = Plus / Minus Query: 207 cgcgcagcgcatcgccctgcacagcaaccgcgccgcctgctacctcaagctccacgactt 266 ||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 224 cgcgcagcgcatcgcgctgcacagcaaccgcgccgcgtgctacctcaagctccacgactt 165 Query: 267 ccacaagg 274 |||||||| Sbjct: 164 ccacaagg 157
>emb|CR858975.1| Pongo pygmaeus mRNA; cDNA DKFZp468E125 (from clone DKFZp468E125) Length = 3213 Score = 46.1 bits (23), Expect = 0.099 Identities = 32/35 (91%) Strand = Plus / Plus Query: 223 ctgcacagcaaccgcgccgcctgctacctcaagct 257 |||||| | ||||| |||||||||||||||||||| Sbjct: 168 ctgcaccggaaccgggccgcctgctacctcaagct 202
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 46.1 bits (23), Expect = 0.099 Identities = 26/27 (96%) Strand = Plus / Minus Query: 147 cggccgccaccgggaggcgctggagct 173 |||||||||||| |||||||||||||| Sbjct: 768980 cggccgccaccgcgaggcgctggagct 768954
>ref|XM_450174.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2493 Score = 44.1 bits (22), Expect = 0.39 Identities = 31/34 (91%) Strand = Plus / Plus Query: 226 cacagcaaccgcgccgcctgctacctcaagctcc 259 ||||||||||||||||||||| |||| |||||| Sbjct: 299 cacagcaaccgcgccgcctgcctcctccagctcc 332
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 44.1 bits (22), Expect = 0.39 Identities = 31/34 (91%) Strand = Plus / Plus Query: 226 cacagcaaccgcgccgcctgctacctcaagctcc 259 ||||||||||||||||||||| |||| |||||| Sbjct: 2632804 cacagcaaccgcgccgcctgcctcctccagctcc 2632837 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 226 cacagcaaccgcgccgcctgctac 249 |||||||||| ||||||||||||| Sbjct: 21797713 cacagcaacctcgccgcctgctac 21797736
>dbj|AP005582.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0006E02 Length = 141782 Score = 44.1 bits (22), Expect = 0.39 Identities = 31/34 (91%) Strand = Plus / Plus Query: 226 cacagcaaccgcgccgcctgctacctcaagctcc 259 ||||||||||||||||||||| |||| |||||| Sbjct: 78082 cacagcaaccgcgccgcctgcctcctccagctcc 78115
>dbj|AK103761.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033143G11, full insert sequence Length = 2493 Score = 44.1 bits (22), Expect = 0.39 Identities = 31/34 (91%) Strand = Plus / Plus Query: 226 cacagcaaccgcgccgcctgctacctcaagctcc 259 ||||||||||||||||||||| |||| |||||| Sbjct: 299 cacagcaaccgcgccgcctgcctcctccagctcc 332
>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome Length = 3551823 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Minus Query: 163 gcgctggagctctactcggcgg 184 |||||||||||||||||||||| Sbjct: 890301 gcgctggagctctactcggcgg 890280
>gb|AF488414.1| Pennisetum glaucum BAC 311G2 complete sequence Length = 123096 Score = 42.1 bits (21), Expect = 1.5 Identities = 39/45 (86%) Strand = Plus / Plus Query: 127 gcgcacgagctctaccggggcggccgccaccgggaggcgctggag 171 |||||| ||||||||| |||| || ||||||||||| ||||||| Sbjct: 92150 gcgcacaagctctaccagggcagctgccaccgggagttgctggag 92194
>emb|AM039979.1| Xanthomonas albilineans XALB3 region involved in albicidin biosynthesis, strain Xa23R1 Length = 9673 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 208 gcgcagcgcatcgccctgcac 228 ||||||||||||||||||||| Sbjct: 5561 gcgcagcgcatcgccctgcac 5581
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 177 ctcggcggcgctggcggccgc 197 ||||||||||||||||||||| Sbjct: 310841 ctcggcggcgctggcggccgc 310861
>emb|Y15068.1|RNRNAHOP Rattus norvegicus mRNA for Hsp70/Hsp90 organizing protein Length = 1632 Score = 42.1 bits (21), Expect = 1.5 Identities = 30/33 (90%) Strand = Plus / Plus Query: 227 acagcaaccgcgccgcctgctacctcaagctcc 259 |||||||||| |||||||||||| |||||||| Sbjct: 1190 acagcaaccgagccgcctgctacaccaagctcc 1222
>emb|BX640445.1| Bordetella bronchiseptica strain RB50, complete genome; segment 9/16 Length = 348706 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 195 cgcccggggccacgcgcagcgcatcgccc 223 |||||||||| ||||||||||||||||| Sbjct: 305450 cgcccggggcggcgcgcagcgcatcgccc 305422
>emb|BX640432.1| Bordetella parapertussis strain 12822, complete genome; segment 10/14 Length = 346301 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 195 cgcccggggccacgcgcagcgcatcgccc 223 |||||||||| ||||||||||||||||| Sbjct: 30443 cgcccggggcggcgcgcagcgcatcgccc 30415
>gb|BC061529.1| Rattus norvegicus stress-induced phosphoprotein 1, mRNA (cDNA clone MGC:72684 IMAGE:6887497), complete cds Length = 2124 Score = 42.1 bits (21), Expect = 1.5 Identities = 30/33 (90%) Strand = Plus / Plus Query: 227 acagcaaccgcgccgcctgctacctcaagctcc 259 |||||||||| |||||||||||| |||||||| Sbjct: 1256 acagcaaccgagccgcctgctacaccaagctcc 1288
>gb|CP000133.1| Rhizobium etli CFN 42, complete genome Length = 4381608 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 111 ggaggcggtggagcgggcgcacgag 135 |||||||||||||||||||| |||| Sbjct: 1269777 ggaggcggtggagcgggcgctcgag 1269801
>ref|NM_138911.2| Rattus norvegicus stress-induced phosphoprotein 1 (Stip1), mRNA Length = 2124 Score = 42.1 bits (21), Expect = 1.5 Identities = 30/33 (90%) Strand = Plus / Plus Query: 227 acagcaaccgcgccgcctgctacctcaagctcc 259 |||||||||| |||||||||||| |||||||| Sbjct: 1256 acagcaaccgagccgcctgctacaccaagctcc 1288
>gb|CP000252.1| Syntrophus aciditrophicus SB, complete genome Length = 3179300 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 217 atcgccctgcacagcaaccgc 237 ||||||||||||||||||||| Sbjct: 1229501 atcgccctgcacagcaaccgc 1229481
>gb|AC163610.4| Mus musculus BAC clone RP23-59P17 from chromosome 13, complete sequence Length = 237111 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 106 ggggcggaggcggtggagcg 125 |||||||||||||||||||| Sbjct: 126059 ggggcggaggcggtggagcg 126040
>gb|CP000150.1| Burkholderia sp. 383 chromosome 3, complete sequence Length = 1395069 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 193 gccgcccggggccacgcgcagcgc 216 ||||||||| |||||||||||||| Sbjct: 900532 gccgcccggcgccacgcgcagcgc 900555
>ref|XM_462649.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2700 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 179 cggcggcgctggcggccgcccggg 202 ||||||||||||||||||| |||| Sbjct: 2510 cggcggcgctggcggccgcgcggg 2533
>ref|XM_478704.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2116 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 224 tgcacagcaaccgcgccgcc 243 |||||||||||||||||||| Sbjct: 913 tgcacagcaaccgcgccgcc 894
>gb|AC124141.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0065C11, complete sequence Length = 141578 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 100 atggcgggggcggaggcggtggag 123 ||||||| |||||||||||||||| Sbjct: 118893 atggcggaggcggaggcggtggag 118916
>gb|AC137593.2| Oryza sativa (Japonica cultiva-group) chromosome 9 BAC clone OSJNBa0043I04, complete sequence Length = 145191 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 226 cacagcaaccgcgccgcctgctac 249 |||||||||| ||||||||||||| Sbjct: 143733 cacagcaacctcgccgcctgctac 143756
>ref|XM_610718.1| PREDICTED: Bos taurus similar to olfactory receptor Olr801 (LOC532208), mRNA Length = 942 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 108 ggcggaggcggtggagcggg 127 |||||||||||||||||||| Sbjct: 804 ggcggaggcggtggagcggg 785
>gb|AC137592.2| Oryza sativa (Japonica cultiva-group) chromosome 9 BAC clone OSJNBa0035B22, complete sequence Length = 155788 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 226 cacagcaaccgcgccgcctgctac 249 |||||||||| ||||||||||||| Sbjct: 3147 cacagcaacctcgccgcctgctac 3170
>ref|XM_960160.1| Neurospora crassa OR74A hypothetical protein (NCU08350.1) partial mRNA Length = 906 Score = 40.1 bits (20), Expect = 6.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 101 tggcgggggcggaggcggtggagcgggc 128 ||||| ||||||||||||||||| |||| Sbjct: 512 tggcgagggcggaggcggtggagagggc 539
>ref|XM_329395.1| Neurospora crassa OR74A hypothetical protein (NCU08350.1) partial mRNA Length = 906 Score = 40.1 bits (20), Expect = 6.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 101 tggcgggggcggaggcggtggagcgggc 128 ||||| ||||||||||||||||| |||| Sbjct: 512 tggcgagggcggaggcggtggagagggc 539
>ref|NM_011438.1| Mus musculus SRY-box containing gene 12 (Sox12), mRNA Length = 4199 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 180 ggcggcgctggcggccgccc 199 |||||||||||||||||||| Sbjct: 996 ggcggcgctggcggccgccc 977
>ref|XM_984542.1| PREDICTED: Mus musculus hypothetical protein LOC671020 (LOC671020), mRNA Length = 2150 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 106 ggggcggaggcggtggagcg 125 |||||||||||||||||||| Sbjct: 1663 ggggcggaggcggtggagcg 1682
>ref|XM_978036.1| PREDICTED: Mus musculus hypothetical protein LOC674915 (LOC674915), mRNA Length = 2150 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 106 ggggcggaggcggtggagcg 125 |||||||||||||||||||| Sbjct: 1663 ggggcggaggcggtggagcg 1682
>ref|XM_974809.1| PREDICTED: Mus musculus hypothetical protein LOC665139 (LOC665139), mRNA Length = 2150 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 106 ggggcggaggcggtggagcg 125 |||||||||||||||||||| Sbjct: 1663 ggggcggaggcggtggagcg 1682
>gb|AC117689.11| Mus musculus chromosome 12, clone RP23-446I19, complete sequence Length = 200562 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 404 agataaatccatcctctgaa 423 |||||||||||||||||||| Sbjct: 35737 agataaatccatcctctgaa 35718
>ref|XM_974143.1| PREDICTED: Mus musculus SRY-box containing gene 12 (Sox12), mRNA Length = 878 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 180 ggcggcgctggcggccgccc 199 |||||||||||||||||||| Sbjct: 108 ggcggcgctggcggccgccc 89
>ref|XM_754998.1| Ustilago maydis 521 hypothetical protein (UM03944.1) partial mRNA Length = 4695 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 177 ctcggcggcgctggcggccg 196 |||||||||||||||||||| Sbjct: 1155 ctcggcggcgctggcggccg 1136
>emb|CR711468.2|CNS0GBX4 Tetraodon nigroviridis full-length cDNA Length = 844 Score = 40.1 bits (20), Expect = 6.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 102 ggcgggggcggaggcggtggagcgggcg 129 ||||||||||| ||||| |||||||||| Sbjct: 438 ggcgggggcgggggcggaggagcgggcg 411
>emb|CR689909.2|CNS0FVA9 Tetraodon nigroviridis full-length cDNA Length = 1480 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 180 ggcggcgctggcggccgccc 199 |||||||||||||||||||| Sbjct: 565 ggcggcgctggcggccgccc 584
>emb|CR689881.2|CNS0FV9H Tetraodon nigroviridis full-length cDNA Length = 1481 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 180 ggcggcgctggcggccgccc 199 |||||||||||||||||||| Sbjct: 562 ggcggcgctggcggccgccc 581
>emb|CR688994.2|CNS0FUKU Tetraodon nigroviridis full-length cDNA Length = 1480 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 180 ggcggcgctggcggccgccc 199 |||||||||||||||||||| Sbjct: 563 ggcggcgctggcggccgccc 582
>emb|CR686348.2|CNS0FSJC Tetraodon nigroviridis full-length cDNA Length = 1476 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 180 ggcggcgctggcggccgccc 199 |||||||||||||||||||| Sbjct: 563 ggcggcgctggcggccgccc 582
>emb|BX640437.1| Bordetella bronchiseptica strain RB50, complete genome; segment 1/16 Length = 347356 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 192 ggccgcccggggccacgcgc 211 |||||||||||||||||||| Sbjct: 24921 ggccgcccggggccacgcgc 24940
>emb|BX640423.1| Bordetella parapertussis strain 12822, complete genome; segment 1/14 Length = 348251 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 192 ggccgcccggggccacgcgc 211 |||||||||||||||||||| Sbjct: 24922 ggccgcccggggccacgcgc 24941
>emb|BX640411.1| Bordetella pertussis strain Tohama I, complete genome; segment 1/12 Length = 346359 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 192 ggccgcccggggccacgcgc 211 |||||||||||||||||||| Sbjct: 24922 ggccgcccggggccacgcgc 24941
>emb|AJ000884.1|PDJ000884 Paracoccus denitrificans, MxaA, MxaC, MxaK, MxaL, MxaD and orf's Length = 5962 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 181 gcggcgctggcggccgcccg 200 |||||||||||||||||||| Sbjct: 2124 gcggcgctggcggccgcccg 2143
>gb|BC067019.1| Mus musculus SRY-box containing gene 12, mRNA (cDNA clone MGC:90023 IMAGE:6833848), complete cds Length = 4199 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 180 ggcggcgctggcggccgccc 199 |||||||||||||||||||| Sbjct: 996 ggcggcgctggcggccgccc 977
>gb|CP000240.1| Synechococcus sp. JA-2-3B'a(2-13), complete genome Length = 3046682 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 220 gccctgcacagcaaccgcgccgcc 243 ||||||| |||||||||||||||| Sbjct: 2941851 gccctgctcagcaaccgcgccgcc 2941874
>dbj|AK144851.1| Mus musculus lung RCB-0558 LLC cDNA, RIKEN full-length enriched library, clone:G730042B03 product:GLI-Kruppel family member GLI3, full insert sequence Length = 2004 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 106 ggggcggaggcggtggagcg 125 |||||||||||||||||||| Sbjct: 15 ggggcggaggcggtggagcg 34
>dbj|AK141061.1| Mus musculus 0 day neonate cerebellum cDNA, RIKEN full-length enriched library, clone:C230028M07 product:unclassifiable, full insert sequence Length = 1925 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 106 ggggcggaggcggtggagcg 125 |||||||||||||||||||| Sbjct: 489 ggggcggaggcggtggagcg 470
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome Length = 4352825 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 112 gaggcggtggagcgggcgca 131 |||||||||||||||||||| Sbjct: 547192 gaggcggtggagcgggcgca 547211
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 98 ccatggcgggggcggaggcggtgg 121 ||||||||| |||||||||||||| Sbjct: 18349092 ccatggcggcggcggaggcggtgg 18349069
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 224 tgcacagcaaccgcgccgcc 243 |||||||||||||||||||| Sbjct: 22317990 tgcacagcaaccgcgccgcc 22318009
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 100 atggcgggggcggaggcggtggag 123 ||||||| |||||||||||||||| Sbjct: 14580888 atggcggaggcggaggcggtggag 14580911
>ref|XM_578093.1| PREDICTED: Rattus norvegicus similar to lipoprotein receptor-related protein (LOC502605), mRNA Length = 885 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 98 ccatggcgggggcggaggcggtgg 121 |||||||||||||||||| ||||| Sbjct: 665 ccatggcgggggcggaggaggtgg 688
>gb|AY161300.1| Chromobacterium violaceum class 4 metalloprotease gene, complete cds Length = 2454 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 177 ctcggcggcgctggcggccg 196 |||||||||||||||||||| Sbjct: 535 ctcggcggcgctggcggccg 554
>dbj|AP005195.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0567H04 Length = 181420 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 224 tgcacagcaaccgcgccgcc 243 |||||||||||||||||||| Sbjct: 123236 tgcacagcaaccgcgccgcc 123255
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 176 actcggcggcgctggcggcc 195 |||||||||||||||||||| Sbjct: 8387962 actcggcggcgctggcggcc 8387943
>emb|AL928568.17| Mouse DNA sequence from clone RP23-396N8 on chromosome 2, complete sequence Length = 98566 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 180 ggcggcgctggcggccgccc 199 |||||||||||||||||||| Sbjct: 71131 ggcggcgctggcggccgccc 71150
>dbj|AK101241.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033031P12, full insert sequence Length = 2116 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 224 tgcacagcaaccgcgccgcc 243 |||||||||||||||||||| Sbjct: 913 tgcacagcaaccgcgccgcc 894
>gb|AY106166.1| Zea mays PCO068984 mRNA sequence Length = 1528 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 108 ggcggaggcggtggagcggg 127 |||||||||||||||||||| Sbjct: 388 ggcggaggcggtggagcggg 407
>gb|U18082.1|SPU18082 Streptomyces peucetius daunorubicin and doxorubicin resistance determinant (drrAB) gene, partial cds, and aklavinone C-11 hydroxylase (dnrF) gene, complete cds Length = 2201 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 179 cggcggcgctggcggccgcccggg 202 ||||||||| |||||||||||||| Sbjct: 1752 cggcggcgcgggcggccgcccggg 1729
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 98 ccatggcgggggcggaggcggtgg 121 ||||||||| |||||||||||||| Sbjct: 18275413 ccatggcggcggcggaggcggtgg 18275390
>emb|AL831799.3|CNS08CAC Oryza sativa chromosome 12, . BAC OSJNBa0087A02 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 177034 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 98 ccatggcgggggcggaggcggtgg 121 ||||||||| |||||||||||||| Sbjct: 21902 ccatggcggcggcggaggcggtgg 21925
>emb|AL845344.4|CNS08CB6 Oryza sativa chromosome 12, . BAC OSJNBb0108O14 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 138585 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 98 ccatggcgggggcggaggcggtgg 121 ||||||||| |||||||||||||| Sbjct: 993 ccatggcggcggcggaggcggtgg 970
>emb|AL606448.3|OSJN00013 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0064H22, complete sequence Length = 147214 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 179 cggcggcgctggcggccgcccggg 202 ||||||||||||||||||| |||| Sbjct: 34442 cggcggcgctggcggccgcgcggg 34465 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,515,384 Number of Sequences: 3902068 Number of extensions: 2515384 Number of successful extensions: 57762 Number of sequences better than 10.0: 67 Number of HSP's better than 10.0 without gapping: 69 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 56713 Number of HSP's gapped (non-prelim): 1048 length of query: 452 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 430 effective length of database: 17,147,199,772 effective search space: 7373295901960 effective search space used: 7373295901960 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
