ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart53d10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC118613.8| Mus musculus chromosome 6, clone RP23-442E2, comp... 42 1.5
2gb|AC161147.6| Mus musculus BAC clone RP23-357G12 from chromosom... 42 1.5
3ref|XM_493873.1| Oryza sativa (japonica cultivar-group), predic... 40 5.8
4gb|AF217490.1|AF217491S3 Homo sapiens fragile 16D oxido reductas... 40 5.8
5emb|AL031588.1|HS1163J1 Human DNA sequence from clone RP5-1163J1... 40 5.8
6gb|AF283321.1|AF283320S2 Homo sapiens low density lipoprotein re... 40 5.8
7dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.8
8gb|AC009141.7| Homo sapiens chromosome 16 clone RP11-543G23, com... 40 5.8
9dbj|AK101136.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.8
10gb|AC084818.3| Oryza sativa (japonica cultivar-group) chromosome... 40 5.8
11gb|AC073405.2| Oryza sativa (japonica cultivar-group) chromosome... 40 5.8
12dbj|AP002366.4| Homo sapiens genomic DNA, chromosome 11 clone:RP... 40 5.8
13dbj|AP000807.4| Homo sapiens genomic DNA, chromosome 11, clone:R... 40 5.8

>gb|AC118613.8| Mus musculus chromosome 6, clone RP23-442E2, complete sequence
          Length = 256556

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 134    ggtgaaagcctctgacccctccatc 158
              |||| ||||||||||||||||||||
Sbjct: 101850 ggtgcaagcctctgacccctccatc 101874



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>gb|AC161147.6| Mus musculus BAC clone RP23-357G12 from chromosome 6, complete sequence
          Length = 225957

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 134   ggtgaaagcctctgacccctccatc 158
             |||| ||||||||||||||||||||
Sbjct: 46735 ggtgcaagcctctgacccctccatc 46711



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>ref|XM_493873.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1833

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 89  gagtgcaggcaatgggttgcccat 112
           |||||||||||||||| |||||||
Sbjct: 295 gagtgcaggcaatggggtgcccat 318



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>gb|AF217490.1|AF217491S3 Homo sapiens fragile 16D oxido reductase (FOR) gene, exons 8, 9, and
              partial cds
          Length = 270752

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 284    ccacctgccatccttcctca 303
              ||||||||||||||||||||
Sbjct: 207894 ccacctgccatccttcctca 207875



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>emb|AL031588.1|HS1163J1 Human DNA sequence from clone RP5-1163J1 on chromosome 22q13.2-13.33,
             complete sequence
          Length = 127168

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 282   gcccacctgccatccttcct 301
             ||||||||||||||||||||
Sbjct: 10492 gcccacctgccatccttcct 10511



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>gb|AF283321.1|AF283320S2 Homo sapiens low density lipoprotein receptor-related protein 5 (LRP5)
             gene, exons 10 through 23 and complete cds
          Length = 64475

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 415   agctgtggaccctggactgg 434
             ||||||||||||||||||||
Sbjct: 16456 agctgtggaccctggactgg 16437



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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5,
              complete sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 89     gagtgcaggcaatgggttgcccat 112
              |||||||||||||||| |||||||
Sbjct: 125991 gagtgcaggcaatggggtgcccat 126014



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>gb|AC009141.7| Homo sapiens chromosome 16 clone RP11-543G23, complete sequence
          Length = 201716

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 284    ccacctgccatccttcctca 303
              ||||||||||||||||||||
Sbjct: 167682 ccacctgccatccttcctca 167701



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>dbj|AK101136.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033026H11, full
           insert sequence
          Length = 2750

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 89  gagtgcaggcaatgggttgcccat 112
           |||||||||||||||| |||||||
Sbjct: 887 gagtgcaggcaatggggtgcccat 910



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>gb|AC084818.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0668H12,
            complete sequence
          Length = 160603

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 89   gagtgcaggcaatgggttgcccat 112
            |||||||||||||||| |||||||
Sbjct: 8179 gagtgcaggcaatggggtgcccat 8202



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>gb|AC073405.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0036D10,
              complete sequence
          Length = 156772

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 89     gagtgcaggcaatgggttgcccat 112
              |||||||||||||||| |||||||
Sbjct: 125991 gagtgcaggcaatggggtgcccat 126014



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>dbj|AP002366.4| Homo sapiens genomic DNA, chromosome 11 clone:RP11-142N13, complete
              sequence
          Length = 198720

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 415    agctgtggaccctggactgg 434
              ||||||||||||||||||||
Sbjct: 152937 agctgtggaccctggactgg 152918



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>dbj|AP000807.4| Homo sapiens genomic DNA, chromosome 11, clone:RP11-715N9, complete
              sequence
          Length = 204439

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 415    agctgtggaccctggactgg 434
              ||||||||||||||||||||
Sbjct: 100006 agctgtggaccctggactgg 99987


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,624,780
Number of Sequences: 3902068
Number of extensions: 2624780
Number of successful extensions: 47080
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 47035
Number of HSP's gapped (non-prelim): 45
length of query: 434
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 412
effective length of database: 17,147,199,772
effective search space: 7064646306064
effective search space used: 7064646306064
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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