Clone Name | bart53d10 |
---|---|
Clone Library Name | barley_pub |
>gb|AC118613.8| Mus musculus chromosome 6, clone RP23-442E2, complete sequence Length = 256556 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 134 ggtgaaagcctctgacccctccatc 158 |||| |||||||||||||||||||| Sbjct: 101850 ggtgcaagcctctgacccctccatc 101874
>gb|AC161147.6| Mus musculus BAC clone RP23-357G12 from chromosome 6, complete sequence Length = 225957 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 134 ggtgaaagcctctgacccctccatc 158 |||| |||||||||||||||||||| Sbjct: 46735 ggtgcaagcctctgacccctccatc 46711
>ref|XM_493873.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1833 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 89 gagtgcaggcaatgggttgcccat 112 |||||||||||||||| ||||||| Sbjct: 295 gagtgcaggcaatggggtgcccat 318
>gb|AF217490.1|AF217491S3 Homo sapiens fragile 16D oxido reductase (FOR) gene, exons 8, 9, and partial cds Length = 270752 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 284 ccacctgccatccttcctca 303 |||||||||||||||||||| Sbjct: 207894 ccacctgccatccttcctca 207875
>emb|AL031588.1|HS1163J1 Human DNA sequence from clone RP5-1163J1 on chromosome 22q13.2-13.33, complete sequence Length = 127168 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 282 gcccacctgccatccttcct 301 |||||||||||||||||||| Sbjct: 10492 gcccacctgccatccttcct 10511
>gb|AF283321.1|AF283320S2 Homo sapiens low density lipoprotein receptor-related protein 5 (LRP5) gene, exons 10 through 23 and complete cds Length = 64475 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 415 agctgtggaccctggactgg 434 |||||||||||||||||||| Sbjct: 16456 agctgtggaccctggactgg 16437
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 89 gagtgcaggcaatgggttgcccat 112 |||||||||||||||| ||||||| Sbjct: 125991 gagtgcaggcaatggggtgcccat 126014
>gb|AC009141.7| Homo sapiens chromosome 16 clone RP11-543G23, complete sequence Length = 201716 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 284 ccacctgccatccttcctca 303 |||||||||||||||||||| Sbjct: 167682 ccacctgccatccttcctca 167701
>dbj|AK101136.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033026H11, full insert sequence Length = 2750 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 89 gagtgcaggcaatgggttgcccat 112 |||||||||||||||| ||||||| Sbjct: 887 gagtgcaggcaatggggtgcccat 910
>gb|AC084818.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0668H12, complete sequence Length = 160603 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 89 gagtgcaggcaatgggttgcccat 112 |||||||||||||||| ||||||| Sbjct: 8179 gagtgcaggcaatggggtgcccat 8202
>gb|AC073405.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0036D10, complete sequence Length = 156772 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 89 gagtgcaggcaatgggttgcccat 112 |||||||||||||||| ||||||| Sbjct: 125991 gagtgcaggcaatggggtgcccat 126014
>dbj|AP002366.4| Homo sapiens genomic DNA, chromosome 11 clone:RP11-142N13, complete sequence Length = 198720 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 415 agctgtggaccctggactgg 434 |||||||||||||||||||| Sbjct: 152937 agctgtggaccctggactgg 152918
>dbj|AP000807.4| Homo sapiens genomic DNA, chromosome 11, clone:RP11-715N9, complete sequence Length = 204439 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 415 agctgtggaccctggactgg 434 |||||||||||||||||||| Sbjct: 100006 agctgtggaccctggactgg 99987 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,624,780 Number of Sequences: 3902068 Number of extensions: 2624780 Number of successful extensions: 47080 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 13 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 47035 Number of HSP's gapped (non-prelim): 45 length of query: 434 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 412 effective length of database: 17,147,199,772 effective search space: 7064646306064 effective search space used: 7064646306064 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)