ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart53d03 |
|---|---|
| Clone Library Name | barley_pub |
>MPAL1_LOLPR (P14946) Pollen allergen Lol p 1 precursor (Lol p I) (Allergen R7)| Length = 263 Score = 73.9 bits (180), Expect = 1e-13 Identities = 28/42 (66%), Positives = 35/42 (83%) Frame = +3 Query: 114 WEDARATWYGAPTGAGPMDDGGACGFKNTNQYPFSSMTSCGN 239 W DA++TWYG PTGAGP D+GGACG+KN ++ PF+ MT CGN Sbjct: 41 WLDAKSTWYGKPTGAGPKDNGGACGYKNVDKAPFNGMTGCGN 82
>MPAP1_PHLPR (P43213) Pollen allergen Phl p 1 precursor (Phl p I)| Length = 263 Score = 73.2 bits (178), Expect = 2e-13 Identities = 29/47 (61%), Positives = 36/47 (76%) Frame = +3 Query: 99 TADPNWEDARATWYGAPTGAGPMDDGGACGFKNTNQYPFSSMTSCGN 239 T W DA++TWYG PTGAGP D+GGACG+K+ ++ PFS MT CGN Sbjct: 36 TYGDKWLDAKSTWYGKPTGAGPKDNGGACGYKDVDKPPFSGMTGCGN 82
>MPAH1_HOLLA (P43216) Major pollen allergen Hol l 1 precursor (Hol l I) (Hol l| 1.0101 and 1.0102) Length = 265 Score = 73.2 bits (178), Expect = 2e-13 Identities = 29/47 (61%), Positives = 36/47 (76%) Frame = +3 Query: 99 TADPNWEDARATWYGAPTGAGPMDDGGACGFKNTNQYPFSSMTSCGN 239 T W DA++TWYG PTGAGP D+GGACG+K+ ++ PFS MT CGN Sbjct: 38 TYGDEWLDAKSTWYGKPTGAGPKDNGGACGYKDVDKPPFSGMTGCGN 84
>MPAP1_PHAAQ (Q41260) Major pollen allergen Pha a 1 precursor (Pha a I)| Length = 269 Score = 72.0 bits (175), Expect = 4e-13 Identities = 27/42 (64%), Positives = 35/42 (83%) Frame = +3 Query: 114 WEDARATWYGAPTGAGPMDDGGACGFKNTNQYPFSSMTSCGN 239 W DA++TWYG PTGAGP D+GGACG+K+ ++ PF+ MT CGN Sbjct: 47 WLDAKSTWYGKPTGAGPKDNGGACGYKDVDKAPFNGMTGCGN 88
>EXB1A_MAIZE (P58738) Beta-expansin 1a precursor (Pollen allergen Zea m 1) (Zea| m I) Length = 269 Score = 67.8 bits (164), Expect = 7e-12 Identities = 28/42 (66%), Positives = 31/42 (73%) Frame = +3 Query: 114 WEDARATWYGAPTGAGPMDDGGACGFKNTNQYPFSSMTSCGN 239 W ARATWYG P GAG D+GGACG KN N P+S MT+CGN Sbjct: 43 WLTARATWYGQPNGAGAPDNGGACGIKNVNLPPYSGMTACGN 84
>MPAC1_CYNDA (O04701) Major pollen allergen Cyn d 1| Length = 246 Score = 58.9 bits (141), Expect = 3e-09 Identities = 26/48 (54%), Positives = 34/48 (70%), Gaps = 1/48 (2%) Frame = +3 Query: 99 TADPNWEDARATWYGA-PTGAGPMDDGGACGFKNTNQYPFSSMTSCGN 239 T W +ARAT+YG+ P GA P D GGACG+K+ ++ PF MT+CGN Sbjct: 13 TYGSKWLEARATFYGSNPRGAAPDDHGGACGYKDVDKPPFDGMTACGN 60
>EXPB2_ARATH (Q9SHY6) Putative beta-expansin 2 precursor (AtEXPB2) (At-EXPB2)| (Ath-ExpBeta-1.4) Length = 273 Score = 53.1 bits (126), Expect = 2e-07 Identities = 27/50 (54%), Positives = 32/50 (64%), Gaps = 1/50 (2%) Frame = +3 Query: 90 SAFTADPNWEDARATWYGAPTGAGPMDDGGACGFKN-TNQYPFSSMTSCG 236 +A T+D +W A +TWYG PTG G DGGACG+ N Q PFS M S G Sbjct: 39 AATTSDSDWSIAGSTWYGNPTGYG--SDGGACGYGNAVAQPPFSKMVSAG 86
>MPAO1_ORYSA (Q40638) Major pollen allergen Ory s 1 precursor (Ory s I)| Length = 263 Score = 45.4 bits (106), Expect = 4e-05 Identities = 19/42 (45%), Positives = 25/42 (59%) Frame = +3 Query: 114 WEDARATWYGAPTGAGPMDDGGACGFKNTNQYPFSSMTSCGN 239 W +AR P P D+GGACG+K+ ++ PF M SCGN Sbjct: 41 WLEARPPGMVRPRVLAPKDNGGACGYKDVDKAPFLGMNSCGN 82
>EXP26_ARATH (Q9FL78) Putative alpha-expansin 26 precursor (AtEXPA26) (At-EXP26)| (AtEx26) (Ath-ExpAlpha-1.16) Length = 279 Score = 39.3 bits (90), Expect = 0.003 Identities = 19/38 (50%), Positives = 22/38 (57%) Frame = +3 Query: 84 NDSAFTADPNWEDARATWYGAPTGAGPMDDGGACGFKN 197 ND + DPNW DARAT+YG G GACG+ N Sbjct: 48 NDPSKALDPNWYDARATFYGDIHGGDTQQ--GACGYGN 83
>EXPB3_ARATH (Q9M0I2) Beta-expansin 3 precursor (AtEXPB3) (At-EXPB3)| (Ath-ExpBeta-1.6) Length = 264 Score = 38.5 bits (88), Expect = 0.005 Identities = 16/30 (53%), Positives = 21/30 (70%) Frame = +3 Query: 102 ADPNWEDARATWYGAPTGAGPMDDGGACGF 191 ++ +W A ATWYG+P G G DGGACG+ Sbjct: 32 SNSHWLPAVATWYGSPNGDG--SDGGACGY 59
>EXP22_ARATH (Q9FL80) Putative alpha-expansin 22 precursor (AtEXPA22) (At-EXP22)| (AtEx22) (Ath-ExpAlpha-1.15) Length = 273 Score = 36.2 bits (82), Expect = 0.023 Identities = 18/38 (47%), Positives = 21/38 (55%) Frame = +3 Query: 84 NDSAFTADPNWEDARATWYGAPTGAGPMDDGGACGFKN 197 ND + D NW DARAT+YG G GACG+ N Sbjct: 42 NDPSKALDTNWYDARATFYGDIHGGDTQQ--GACGYGN 77
>EXP14_ARATH (Q9FMA0) Putative alpha-expansin 14 precursor (AtEXPA14) (At-EXP14)| (AtEx14) (Ath-ExpAlpha-1.5) Length = 255 Score = 34.7 bits (78), Expect = 0.068 Identities = 16/39 (41%), Positives = 23/39 (58%) Frame = +3 Query: 114 WEDARATWYGAPTGAGPMDDGGACGFKNTNQYPFSSMTS 230 W +ARAT+YG +G M GGACG+ N + + T+ Sbjct: 29 WVNARATFYGGADASGTM--GGACGYGNLYSQGYGTNTA 65
>EXPA4_ARATH (O48818) Alpha-expansin 4 precursor (AtEXPA4) (At-EXP4) (AtEx4)| (Ath-ExpAlpha-1.6) Length = 257 Score = 34.3 bits (77), Expect = 0.088 Identities = 15/39 (38%), Positives = 23/39 (58%) Frame = +3 Query: 114 WEDARATWYGAPTGAGPMDDGGACGFKNTNQYPFSSMTS 230 W++A AT+YG +G M GGACG+ N + + T+ Sbjct: 31 WQNAHATFYGGSDASGTM--GGACGYGNLYSQGYGTNTA 67
>EXPB5_ARATH (Q9M203) Putative beta-expansin 5 precursor (AtEXPB5) (At-EXPB5)| (Ath-ExpBeta-1.3) Length = 264 Score = 34.3 bits (77), Expect = 0.088 Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 1/43 (2%) Frame = +3 Query: 111 NWEDARATWYGAPTGAGPMDDGGACGFKN-TNQYPFSSMTSCG 236 +W A TWYG GP GGACG+ + ++P+ M S G Sbjct: 33 HWNTAGITWYG--DREGPGTTGGACGYGDAVAKHPYRCMVSAG 73
>EXPA6_ARATH (Q38865) Alpha-expansin 6 precursor (AtEXPA6) (At-EXP6) (AtEx6)| (Ath-ExpAlpha-1.8) Length = 257 Score = 33.9 bits (76), Expect = 0.12 Identities = 15/28 (53%), Positives = 18/28 (64%) Frame = +3 Query: 114 WEDARATWYGAPTGAGPMDDGGACGFKN 197 WE A AT+YG +G M GGACG+ N Sbjct: 31 WETAHATFYGGSDASGTM--GGACGYGN 56
>EXP16_ARATH (Q9M2S9) Alpha-expansin 16 precursor (AtEXPA16) (At-EXP16) (AtEx16)| (Ath-ExpAlpha-1.7) Length = 260 Score = 33.5 bits (75), Expect = 0.15 Identities = 15/40 (37%), Positives = 23/40 (57%) Frame = +3 Query: 111 NWEDARATWYGAPTGAGPMDDGGACGFKNTNQYPFSSMTS 230 +W+ A AT+YG +G M GGACG+ N + + T+ Sbjct: 33 SWQTAHATFYGGNDASGTM--GGACGYGNLYSQGYGTNTA 70
>EXPA2_ARATH (Q38866) Alpha-expansin 2 precursor (AtEXPA2) (At-EXP2) (AtEx2)| (Ath-ExpAlpha-1.12) Length = 255 Score = 33.5 bits (75), Expect = 0.15 Identities = 15/39 (38%), Positives = 21/39 (53%) Frame = +3 Query: 114 WEDARATWYGAPTGAGPMDDGGACGFKNTNQYPFSSMTS 230 WE AT+YG +G M GGACG+ N + + T+ Sbjct: 32 WERGHATFYGGADASGTM--GGACGYGNLHSQGYGLQTA 68
>EXPA3_ARATH (O80932) Alpha-expansin 3 precursor (AtEXPA3) (At-EXP3) (AtEx3)| (Ath-ExpAlpha-1.9) Length = 262 Score = 33.5 bits (75), Expect = 0.15 Identities = 14/28 (50%), Positives = 19/28 (67%) Frame = +3 Query: 114 WEDARATWYGAPTGAGPMDDGGACGFKN 197 W++A AT+YG +G M GGACG+ N Sbjct: 36 WQNAHATFYGGSDASGTM--GGACGYGN 61
>EXP18_ARATH (Q9LQ07) Alpha-expansin 18 precursor (AtEXPA18) (At-EXP18) (AtEx18)| (Ath-ExpAlpha-1.25) Length = 257 Score = 33.1 bits (74), Expect = 0.20 Identities = 15/28 (53%), Positives = 18/28 (64%) Frame = +3 Query: 114 WEDARATWYGAPTGAGPMDDGGACGFKN 197 W A AT+YG TG+ M GGACG+ N Sbjct: 31 WRTASATFYGDDTGSATM--GGACGYGN 56
>EXPB1_ARATH (Q9SKU2) Beta-expansin 1 precursor (AtEXPB1) (At-EXPB1)| (Ath-ExpBeta-1.5) Length = 271 Score = 33.1 bits (74), Expect = 0.20 Identities = 15/30 (50%), Positives = 17/30 (56%) Frame = +3 Query: 102 ADPNWEDARATWYGAPTGAGPMDDGGACGF 191 A W A ATWYG+ G G GGACG+ Sbjct: 36 AATRWLPATATWYGSAEGDG--SSGGACGY 63
>EXPB4_ARATH (Q9SHD1) Putative beta-expansin 4 precursor (AtEXPB4) (At-EXPB4)| (Ath-ExpBeta-1.1) Length = 259 Score = 33.1 bits (74), Expect = 0.20 Identities = 18/39 (46%), Positives = 21/39 (53%), Gaps = 1/39 (2%) Frame = +3 Query: 123 ARATWYGAPTGAGPMDDGGACGFKN-TNQYPFSSMTSCG 236 A TWYG P GAG GGACG+ + P +M S G Sbjct: 36 AGVTWYGEPFGAG--STGGACGYGSAVANPPLYAMVSAG 72
>EXP21_ARATH (Q9FL81) Putative alpha-expansin 21 precursor (AtEXPA21) (At-EXP21)| (AtEx21) (Ath-ExpAlpha-1.20) Length = 256 Score = 32.7 bits (73), Expect = 0.26 Identities = 16/42 (38%), Positives = 24/42 (57%) Frame = +3 Query: 105 DPNWEDARATWYGAPTGAGPMDDGGACGFKNTNQYPFSSMTS 230 D W DARA +YG G G + GACG+ + N++ + T+ Sbjct: 36 DTAWYDARAAYYGDIHGGG-TELEGACGYGDLNKHGYGLATA 76
>EXPA8_ARATH (O22874) Alpha-expansin 8 precursor (AtEXPA8) (At-EXP8) (AtEx8)| (Ath-ExpAlpha-1.11) Length = 253 Score = 32.7 bits (73), Expect = 0.26 Identities = 14/31 (45%), Positives = 18/31 (58%) Frame = +3 Query: 105 DPNWEDARATWYGAPTGAGPMDDGGACGFKN 197 D W+ AT+YG +G M GGACG+ N Sbjct: 27 DGGWQGGHATFYGGEDASGTM--GGACGYGN 55
>EXP10_ARATH (Q9LDR9) Alpha-expansin 10 precursor (AtEXPA10) (At-EXP10) (AtEx10)| (Ath-ExpAlpha-1.1) Length = 249 Score = 32.3 bits (72), Expect = 0.34 Identities = 15/39 (38%), Positives = 22/39 (56%) Frame = +3 Query: 114 WEDARATWYGAPTGAGPMDDGGACGFKNTNQYPFSSMTS 230 W +A AT+YG +G M GGACG+ N + + T+ Sbjct: 26 WINAHATFYGGGDASGTM--GGACGYGNLYSQGYGTSTA 62
>ISPE_NOVAD (Q2G7F1) 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC| 2.7.1.148) (CMK) (4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol kinase) Length = 285 Score = 32.3 bits (72), Expect = 0.34 Identities = 12/27 (44%), Positives = 18/27 (66%) Frame = +2 Query: 128 GHLVRRAHGCRPHGRRWCVRVQEHQPV 208 G++V +A G PHG W V +++H PV Sbjct: 84 GNIVAKALGTLPHGEGWAVTLEKHLPV 110
>HSPB1_PIG (Q5S1U1) Heat-shock protein beta-1 (HspB1) (Heat shock 27 kDa| protein) (HSP 27) Length = 207 Score = 32.0 bits (71), Expect = 0.44 Identities = 16/36 (44%), Positives = 19/36 (52%) Frame = -1 Query: 205 WLVFLNPHAPPSSMGPAPVGAPYQVALASSQLGSAV 98 W ++ P PP+ GPA V AP L S QL S V Sbjct: 52 WPGYVRPLPPPAIEGPAAVAAPAYSRLLSRQLSSGV 87
>RXRB_MOUSE (P28704) Retinoic acid receptor RXR-beta (Retinoid X receptor beta)| (MHC class I regulatory element-binding protein H-2RIIBP) Length = 520 Score = 31.2 bits (69), Expect = 0.75 Identities = 15/30 (50%), Positives = 19/30 (63%) Frame = -1 Query: 193 LNPHAPPSSMGPAPVGAPYQVALASSQLGS 104 L P APP M P P+G+P+ V SS +GS Sbjct: 102 LTPSAPPPPMPPPPLGSPFPV--ISSSMGS 129
>ETV2_HUMAN (O00321) ETS translocation variant 2 (Ets-related protein 71)| Length = 341 Score = 31.2 bits (69), Expect = 0.75 Identities = 17/47 (36%), Positives = 22/47 (46%) Frame = +3 Query: 72 AGTFNDSAFTADPNWEDARATWYGAPTGAGPMDDGGACGFKNTNQYP 212 +G + D A TA +W A T AP G GP+ G+ G N P Sbjct: 87 SGDWTDMACTAWDSWSGASQTLGPAPLGPGPIPAAGSEGAAGQNCVP 133
>EXP20_ARATH (Q9SZM1) Alpha-expansin 20 precursor (AtEXPA20) (At-EXP20) (AtEx20)| (Ath-ExpAlpha-1.23) Length = 256 Score = 30.4 bits (67), Expect = 1.3 Identities = 14/44 (31%), Positives = 24/44 (54%) Frame = +3 Query: 99 TADPNWEDARATWYGAPTGAGPMDDGGACGFKNTNQYPFSSMTS 230 TA+ +W+ A AT G+ + GGACG+ + Q F+ ++ Sbjct: 23 TAEDDWKIATATLSRDRDGSSSVATGGACGYGDLRQSSFAGYSA 66
>RXRB_RAT (P49743) Retinoic acid receptor RXR-beta (Retinoid X receptor beta)| (Nuclear receptor coregulator 1) (Fragment) Length = 458 Score = 29.6 bits (65), Expect = 2.2 Identities = 14/28 (50%), Positives = 18/28 (64%) Frame = -1 Query: 187 PHAPPSSMGPAPVGAPYQVALASSQLGS 104 P APP M P P+G+P+ V SS +GS Sbjct: 42 PSAPPPPMPPPPLGSPFPV--ISSSMGS 67
>YEMA_DROME (P25992) Yemanuclein-alpha| Length = 1002 Score = 29.6 bits (65), Expect = 2.2 Identities = 23/60 (38%), Positives = 27/60 (45%), Gaps = 3/60 (5%) Frame = -1 Query: 187 PHAPPSSMGPAPVG---APYQVALASSQLGSAVKAESLKXXXXXXXXVTRREDSATSATA 17 P APP+S P PVG AP Q+ ASS LK DSATSA++ Sbjct: 649 PKAPPASASPKPVGVVSAPEQMPPASSY---------LKAVEDPRSRGNSDTDSATSASS 699
>EXP25_ARATH (Q9FL77) Putative alpha-expansin 25 precursor (AtEXPA25) (At-EXP25)| (AtEx25) (Ath-ExpAlpha-1.18) Length = 276 Score = 29.3 bits (64), Expect = 2.8 Identities = 14/29 (48%), Positives = 17/29 (58%) Frame = +3 Query: 105 DPNWEDARATWYGAPTGAGPMDDGGACGF 191 D +W DARAT+YG G GACG+ Sbjct: 52 DSSWYDARATFYGDIHGGETQQ--GACGY 78
>EXP23_ARATH (Q9FL79) Alpha-expansin 23 precursor (AtEXPA23) (At-EXP23) (AtEx23)| (Ath-ExpAlpha-1.17) Length = 269 Score = 29.3 bits (64), Expect = 2.8 Identities = 14/29 (48%), Positives = 17/29 (58%) Frame = +3 Query: 105 DPNWEDARATWYGAPTGAGPMDDGGACGF 191 D +W DARAT+YG G GACG+ Sbjct: 45 DSSWYDARATFYGDIHGGETQQ--GACGY 71
>EXP12_ARATH (Q9LDJ3) Alpha-expansin 12 precursor (AtEXPA12) (At-EXP12) (AtEx12)| (Expansin S2) (Ath-ExpAlpha-1.24) Length = 252 Score = 29.3 bits (64), Expect = 2.8 Identities = 15/39 (38%), Positives = 19/39 (48%) Frame = +3 Query: 114 WEDARATWYGAPTGAGPMDDGGACGFKNTNQYPFSSMTS 230 W A AT+YG P GGACG+ N F + T+ Sbjct: 27 WIRAHATYYGV--NDSPASLGGACGYDNPYHAGFGAHTA 63
>CR14_HORVU (P26154) Cold-regulated protein BLT14| Length = 88 Score = 28.9 bits (63), Expect = 3.7 Identities = 15/38 (39%), Positives = 15/38 (39%), Gaps = 7/38 (18%) Frame = -2 Query: 240 RCRTMSWRRR-------GTGWCS*TRTHHRRPWGRHPW 148 RCR WRRR G HH RP G PW Sbjct: 32 RCRCQRWRRRLQGFGLAAAGGNRYRNKHHYRPAGGDPW 69
>LHX5_BRARE (P52889) LIM/homeobox protein Lhx5 (Homeobox protein LIM-5)| Length = 399 Score = 28.5 bits (62), Expect = 4.8 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%) Frame = -1 Query: 187 PHAPPSSMGPAPVGAPYQVALASSQL-GSAVKA 92 PH PPSS +P +PY ++ S L G V A Sbjct: 297 PHGPPSSQAHSPAESPYLLSSGSGALEGGPVSA 329
>TCMO_STRGA (P39896) Tetracenomycin polyketide synthesis 8-O-methyl transferase| tcmO (EC 2.1.1.-) Length = 339 Score = 28.5 bits (62), Expect = 4.8 Identities = 12/31 (38%), Positives = 16/31 (51%) Frame = +2 Query: 113 LGGRQGHLVRRAHGCRPHGRRWCVRVQEHQP 205 LGG +G+L H PH R C + E +P Sbjct: 176 LGGARGNLAAHLHRAHPHLRATCFDLPEMEP 206
>TGL1_YEAST (P34163) Triglyceride lipase-cholesterol esterase (EC 3.1.1.-)| Length = 548 Score = 28.1 bits (61), Expect = 6.3 Identities = 9/27 (33%), Positives = 15/27 (55%) Frame = +2 Query: 149 HGCRPHGRRWCVRVQEHQPVPLLLHDI 229 HG WC ++ H+ +P +LHD+ Sbjct: 112 HGLLMCSDVWCCNIERHKNLPFVLHDL 138
>EXP11_ARATH (Q9LNU3) Alpha-expansin 11 precursor (AtEXPA11) (At-EXP11) (AtEx11)| (Ath-ExpAlpha-1.14) Length = 252 Score = 28.1 bits (61), Expect = 6.3 Identities = 13/37 (35%), Positives = 21/37 (56%) Frame = +3 Query: 120 DARATWYGAPTGAGPMDDGGACGFKNTNQYPFSSMTS 230 + AT+YG +G M GGACG+ + + +MT+ Sbjct: 28 NGHATFYGGSDASGTM--GGACGYGDLYSAGYGTMTA 62
>EXP13_ARATH (Q9M9P0) Alpha-expansin 13 precursor (AtEXPA13) (At-EXP13) (AtEx13)| (Ath-ExpAlpha-1.22) Length = 266 Score = 27.7 bits (60), Expect = 8.3 Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 2/38 (5%) Frame = +3 Query: 84 NDSAFTADPN-WEDARATWYGAPTGAGPMDD-GGACGF 191 + S+ ++D + W ARAT+Y A P D GGACG+ Sbjct: 29 SSSSVSSDASEWRPARATYYAA---TNPRDAVGGACGY 63 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 23,229,578 Number of Sequences: 219361 Number of extensions: 384129 Number of successful extensions: 1789 Number of sequences better than 10.0: 40 Number of HSP's better than 10.0 without gapping: 1724 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1782 length of database: 80,573,946 effective HSP length: 55 effective length of database: 68,509,091 effective search space used: 1644218184 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
