ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart53c06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1AOC3_ARATH (Q9LS01) Allene oxide cyclase 3, chloroplast precurso... 97 3e-20
2AOC4_ARATH (Q93ZC5) Allene oxide cyclase 4, chloroplast precurso... 96 5e-20
3AOC2_ARATH (Q9LS02) Allene oxide cyclase 2, chloroplast precurso... 85 1e-16
4AOC1_ARATH (Q9LS03) Allene oxide cyclase 1, chloroplast precurso... 84 2e-16
5HLES_DROME (Q02308) Protein hairless 29 5.3
6PCCB_DROME (Q9V9A7) Putative propionyl-CoA carboxylase beta chai... 29 6.9

>AOC3_ARATH (Q9LS01) Allene oxide cyclase 3, chloroplast precursor (EC|
           5.3.99.6)
          Length = 258

 Score = 96.7 bits (239), Expect = 3e-20
 Identities = 44/68 (64%), Positives = 55/68 (80%)
 Frame = +3

Query: 267 DARPSKVQELHVYEPNERDRESPAYLRLSANQSQNALGDLVPFTNKVYNGSLDKRIGITA 446
           ++RPSK+QEL+VYE NE DR SPA L+L    ++  LGDLVPFTNK+Y G L KR+GITA
Sbjct: 79  NSRPSKIQELNVYELNEGDRNSPAVLKLGKKPTELCLGDLVPFTNKLYTGDLKKRVGITA 138

Query: 447 GICILIQH 470
           G+C+LIQH
Sbjct: 139 GLCVLIQH 146



to top

>AOC4_ARATH (Q93ZC5) Allene oxide cyclase 4, chloroplast precursor (EC|
           5.3.99.6)
          Length = 254

 Score = 95.9 bits (237), Expect = 5e-20
 Identities = 45/67 (67%), Positives = 53/67 (79%)
 Frame = +3

Query: 270 ARPSKVQELHVYEPNERDRESPAYLRLSANQSQNALGDLVPFTNKVYNGSLDKRIGITAG 449
           +RP+K+QEL+VYE NE DR SPA L+L     Q  LGDLVPFTNK+Y G L KRIGITAG
Sbjct: 76  SRPTKIQELNVYEFNEGDRNSPAVLKLGKKPDQLCLGDLVPFTNKLYTGDLTKRIGITAG 135

Query: 450 ICILIQH 470
           +C+LIQH
Sbjct: 136 LCVLIQH 142



to top

>AOC2_ARATH (Q9LS02) Allene oxide cyclase 2, chloroplast precursor (EC|
           5.3.99.6)
          Length = 253

 Score = 84.7 bits (208), Expect = 1e-16
 Identities = 42/66 (63%), Positives = 50/66 (75%)
 Frame = +3

Query: 273 RPSKVQELHVYEPNERDRESPAYLRLSANQSQNALGDLVPFTNKVYNGSLDKRIGITAGI 452
           RPSKVQEL VYE NE DR SP  L+ +A      LGDLVPFTNK+Y G L KR+GITAG+
Sbjct: 77  RPSKVQELSVYEINELDRHSPKILK-NAFSLMFGLGDLVPFTNKLYTGDLKKRVGITAGL 135

Query: 453 CILIQH 470
           C++I+H
Sbjct: 136 CVVIEH 141



to top

>AOC1_ARATH (Q9LS03) Allene oxide cyclase 1, chloroplast precursor (EC|
           5.3.99.6) (Early-responsive to dehydration 12 protein)
          Length = 254

 Score = 84.0 bits (206), Expect = 2e-16
 Identities = 41/66 (62%), Positives = 51/66 (77%)
 Frame = +3

Query: 273 RPSKVQELHVYEPNERDRESPAYLRLSANQSQNALGDLVPFTNKVYNGSLDKRIGITAGI 452
           RPSKVQEL VYE N+ DR SP  L+ +A   +  LGDLVPFTNK+Y G L KR+GITAG+
Sbjct: 78  RPSKVQELSVYEINDLDRHSPKILK-NAFSFRFGLGDLVPFTNKLYTGDLKKRVGITAGL 136

Query: 453 CILIQH 470
           C++I+H
Sbjct: 137 CVVIEH 142



to top

>HLES_DROME (Q02308) Protein hairless|
          Length = 1077

 Score = 29.3 bits (64), Expect = 5.3
 Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
 Frame = +3

Query: 246 PKPAVAMDARPSKVQELHVYEPNERDRESPAYLRLSANQSQNALGDLVPFTNKV---YNG 416
           PK AV+ D+   +       EP  +D      ++++ ++ +  + +L   TN V    NG
Sbjct: 427 PKKAVSDDSESKEASPGQQVEPQPKDETVDVEMKMNTSEDEEPMTELPRITNAVNGDLNG 486

Query: 417 SLDKRIG 437
            L   IG
Sbjct: 487 DLKASIG 493



to top

>PCCB_DROME (Q9V9A7) Putative propionyl-CoA carboxylase beta chain,|
           mitochondrial precursor (EC 6.4.1.3) (PCCase beta
           subunit) (Propanoyl-CoA:carbon dioxide ligase beta
           subunit)
          Length = 578

 Score = 28.9 bits (63), Expect = 6.9
 Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 4/56 (7%)
 Frame = +3

Query: 279 SKVQELHVYEPN----ERDRESPAYLRLSANQSQNALGDLVPFTNKVYNGSLDKRI 434
           S+V+ LHV + N    E D++S  Y + +A +  + +GDL  FT++V  G   K I
Sbjct: 17  SQVRLLHVGDANVLHSEVDKQSAEY-KENAREMASLVGDLRNFTSQVLKGGGQKAI 71


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,407,317
Number of Sequences: 219361
Number of extensions: 458383
Number of successful extensions: 1447
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1429
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1445
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3072927439
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top