ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart53c05 |
|---|---|
| Clone Library Name | barley_pub |
>LEA14_SOYBN (P46519) Desiccation protectant protein Lea14 homolog| Length = 152 Score = 42.0 bits (97), Expect = 9e-04 Identities = 20/78 (25%), Positives = 37/78 (47%) Frame = +1 Query: 253 IDKVKDFIHDIGEKIEEAVGFGKPSADVARIHVPHIGLHRADLVVDVLIKNPNPVPIPLV 432 +DK K+++ E+ KP A V + + + + V + NP PIP+ Sbjct: 5 LDKAKNYV------AEKVTNMPKPEASVTDVDFKRVSRDSVEYLAKVSVSNPYSTPIPIC 58 Query: 433 DIDYLIDSDGRKLVAGLI 486 +I Y + S G+++ +G I Sbjct: 59 EIKYSLKSAGKEIASGTI 76
>DRPD_CRAPL (P22241) Desiccation-related protein PCC27-45| Length = 151 Score = 41.2 bits (95), Expect = 0.001 Identities = 22/78 (28%), Positives = 39/78 (50%) Frame = +1 Query: 253 IDKVKDFIHDIGEKIEEAVGFGKPSADVARIHVPHIGLHRADLVVDVLIKNPNPVPIPLV 432 ++K K+F+ E+ KP A V + + +G H + + ++NP IP+ Sbjct: 5 MNKAKNFV------AEKVANVEKPKASVEDVDLKDVGRHGITYLTRICVENPYSASIPVG 58 Query: 433 DIDYLIDSDGRKLVAGLI 486 +I Y + S GR +V+G I Sbjct: 59 EIKYTLKSAGRVIVSGNI 76
>LEA14_GOSHI (P46518) Late embryogenesis abundant protein Lea14-A| Length = 151 Score = 40.8 bits (94), Expect = 0.002 Identities = 21/78 (26%), Positives = 37/78 (47%) Frame = +1 Query: 253 IDKVKDFIHDIGEKIEEAVGFGKPSADVARIHVPHIGLHRADLVVDVLIKNPNPVPIPLV 432 ++K KDF+ +++ KP A V+ + + H+ + V + NP IP+ Sbjct: 5 LEKAKDFV------VDKVANIKKPEASVSDVDLKHVSRECVEYGAKVSVSNPYSHSIPIC 58 Query: 433 DIDYLIDSDGRKLVAGLI 486 +I Y S GR + +G I Sbjct: 59 EISYNFRSAGRGIASGTI 76
>UC29_MAIZE (P80635) Unknown protein from 2D-PAGE of etiolated coleoptile (Spot| 45) (Fragment) Length = 15 Score = 36.6 bits (83), Expect = 0.036 Identities = 15/15 (100%), Positives = 15/15 (100%) Frame = +1 Query: 403 NPNPVPIPLVDIDYL 447 NPNPVPIPLVDIDYL Sbjct: 1 NPNPVPIPLVDIDYL 15
>LEA14_ARATH (O03983) Putative dessication-related protein LEA14| Length = 151 Score = 36.2 bits (82), Expect = 0.048 Identities = 20/78 (25%), Positives = 34/78 (43%) Frame = +1 Query: 253 IDKVKDFIHDIGEKIEEAVGFGKPSADVARIHVPHIGLHRADLVVDVLIKNPNPVPIPLV 432 +DK KDF+ D + KP V + + + + + V + NP IP+ Sbjct: 5 LDKAKDFVAD------KLTAIPKPEGSVTDVDLKDVNRDSVEYLAKVSVTNPYSHSIPIC 58 Query: 433 DIDYLIDSDGRKLVAGLI 486 +I + S GR++ G I Sbjct: 59 EISFTFHSAGREIGKGKI 76
>DEF_SYNEL (Q8DIB4) Peptide deformylase (EC 3.5.1.88) (PDF) (Polypeptide| deformylase) Length = 188 Score = 32.7 bits (73), Expect = 0.53 Identities = 17/61 (27%), Positives = 33/61 (54%) Frame = +1 Query: 253 IDKVKDFIHDIGEKIEEAVGFGKPSADVARIHVPHIGLHRADLVVDVLIKNPNPVPIPLV 432 + KV D I DI K+ + + SAD + P +G+++ LV+D+ +P P+ ++ Sbjct: 34 VSKVDDSIRDIARKMLQTMY----SADGIGLAAPQVGINKQILVIDIHPDDPEAEPLVMI 89 Query: 433 D 435 + Sbjct: 90 N 90
>PICA_RAT (O55012) Phosphatidylinositol-binding clathrin assembly protein| (Clathrin assembly lymphoid myeloid leukemia protein) (rCALM) Length = 640 Score = 31.6 bits (70), Expect = 1.2 Identities = 15/38 (39%), Positives = 25/38 (65%) Frame = +1 Query: 40 ASPLSISAGRDLKQASSDLASQPAAMSSSSDNPNEVTD 153 ASP+S SAG + + D+ S P++ +S+S PN++ D Sbjct: 358 ASPVSTSAGGIMTAPAIDIFSTPSSSNSTSKLPNDLLD 395
>PICAL_HUMAN (Q13492) Phosphatidylinositol-binding clathrin assembly protein| (Clathrin assembly lymphoid myeloid leukemia protein) Length = 652 Score = 31.6 bits (70), Expect = 1.2 Identities = 15/38 (39%), Positives = 25/38 (65%) Frame = +1 Query: 40 ASPLSISAGRDLKQASSDLASQPAAMSSSSDNPNEVTD 153 ASP+S SAG + + D+ S P++ +S+S PN++ D Sbjct: 358 ASPVSTSAGGIMTAPAIDIFSTPSSSNSTSKLPNDLLD 395
>PICA_MOUSE (Q7M6Y3) Phosphatidylinositol-binding clathrin assembly protein| (Clathrin assembly lymphoid myeloid leukemia) (CALM) Length = 660 Score = 31.6 bits (70), Expect = 1.2 Identities = 15/38 (39%), Positives = 25/38 (65%) Frame = +1 Query: 40 ASPLSISAGRDLKQASSDLASQPAAMSSSSDNPNEVTD 153 ASP+S SAG + + D+ S P++ +S+S PN++ D Sbjct: 358 ASPVSTSAGGIMTAPAIDIFSTPSSSNSTSKLPNDLLD 395
>Y3593_NOCFA (Q5YTQ0) UPF0042 protein nfa35930| Length = 316 Score = 30.8 bits (68), Expect = 2.0 Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 6/62 (9%) Frame = +1 Query: 253 IDKVKDFIHDIGEKIEEAVGFGKPSADVARIHVPHIGLH-----RADLVVDV-LIKNPNP 414 ID + IH + K+EEA G G P+A ++ V G AD+V+DV + NP+ Sbjct: 163 IDTTELSIHQLHRKLEEAYGGGAPAA--LQLTVQSFGFKYGVPLDADMVLDVRFLPNPHW 220 Query: 415 VP 420 +P Sbjct: 221 IP 222
>ALKJ_PSEPU (Q9WWW2) Alcohol dehydrogenase [acceptor] (EC 1.1.99.-)| Length = 552 Score = 29.3 bits (64), Expect = 5.8 Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 5/76 (6%) Frame = +1 Query: 271 FIHDIGEKIEEAVGFGKPSADVARIHVPHIGLHRADLVVD----VLIKNPNPVPIPLVDI 438 ++ D G KI AVG+G LH DL+ + +K+ NP+ PL+D Sbjct: 364 YLKDHGRKI--AVGYGYT-------------LHICDLLPKSRGRIGLKSANPMDDPLIDP 408 Query: 439 DYLID-SDGRKLVAGL 483 +YL D D + ++AG+ Sbjct: 409 NYLSDPEDIKTMIAGI 424
>FMT_MOUSE (Q9D799) Methionyl-tRNA formyltransferase, mitochondrial precursor| (EC 2.1.2.9) (MtFMT) Length = 386 Score = 29.3 bits (64), Expect = 5.8 Identities = 15/35 (42%), Positives = 20/35 (57%) Frame = -1 Query: 108 WLAGKIGACLLQIPAGGDGKWRCGNQMKSNKRGWR 4 WL G+ C Q PAG DGK G++++ K WR Sbjct: 11 WLMGRRPRCSCQAPAGFDGKDGRGSRVR-EKPPWR 44
>FMT_RAT (Q5I0C5) Methionyl-tRNA formyltransferase, mitochondrial precursor| (EC 2.1.2.9) (MtFMT) Length = 385 Score = 28.9 bits (63), Expect = 7.6 Identities = 15/35 (42%), Positives = 20/35 (57%) Frame = -1 Query: 108 WLAGKIGACLLQIPAGGDGKWRCGNQMKSNKRGWR 4 WLAG+ C Q PAG GK R ++++ K WR Sbjct: 11 WLAGRRPRCSCQSPAGFSGKDRRSSRVR-EKPPWR 44
>MNTH_LISMO (Q8Y773) Probable manganese transport protein mntH| Length = 448 Score = 28.9 bits (63), Expect = 7.6 Identities = 15/23 (65%), Positives = 16/23 (69%) Frame = +1 Query: 40 ASPLSISAGRDLKQASSDLASQP 108 AS L I GRDL QASSD S+P Sbjct: 93 ASKLGIVTGRDLAQASSDHFSKP 115
>MNTH_LISMF (Q71ZP6) Probable manganese transport protein mntH| Length = 448 Score = 28.9 bits (63), Expect = 7.6 Identities = 15/23 (65%), Positives = 16/23 (69%) Frame = +1 Query: 40 ASPLSISAGRDLKQASSDLASQP 108 AS L I GRDL QASSD S+P Sbjct: 93 ASKLGIVTGRDLAQASSDHFSKP 115
>MNTH_LISIN (Q92BT1) Probable manganese transport protein mntH| Length = 448 Score = 28.9 bits (63), Expect = 7.6 Identities = 15/23 (65%), Positives = 16/23 (69%) Frame = +1 Query: 40 ASPLSISAGRDLKQASSDLASQP 108 AS L I GRDL QASSD S+P Sbjct: 93 ASKLGIVTGRDLAQASSDHFSKP 115
>ALKJ_PSEOL (Q00593) Alcohol dehydrogenase [acceptor] (EC 1.1.99.-)| Length = 558 Score = 28.5 bits (62), Expect = 9.9 Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 1/72 (1%) Frame = +1 Query: 271 FIHDIGEKIEEAVGFGKPSADVARIHVPHIGLHRADLVVDVLIKNPNPVPIPLVDIDYLI 450 ++ D G KI G+ D+ IGL K+ NP+ PL+D +YL Sbjct: 364 YLKDHGRKIAGGYGYTLHICDLLPKSRGRIGL-----------KSANPLQPPLIDPNYLS 412 Query: 451 D-SDGRKLVAGL 483 D D + ++AG+ Sbjct: 413 DHEDIKTMIAGI 424 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 41,294,481 Number of Sequences: 219361 Number of extensions: 676434 Number of successful extensions: 2705 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 2647 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2703 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3362826254 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
