ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart53c05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1LEA14_SOYBN (P46519) Desiccation protectant protein Lea14 homolog 42 9e-04
2DRPD_CRAPL (P22241) Desiccation-related protein PCC27-45 41 0.001
3LEA14_GOSHI (P46518) Late embryogenesis abundant protein Lea14-A 41 0.002
4UC29_MAIZE (P80635) Unknown protein from 2D-PAGE of etiolated co... 37 0.036
5LEA14_ARATH (O03983) Putative dessication-related protein LEA14 36 0.048
6DEF_SYNEL (Q8DIB4) Peptide deformylase (EC 3.5.1.88) (PDF) (Poly... 33 0.53
7PICA_RAT (O55012) Phosphatidylinositol-binding clathrin assembly... 32 1.2
8PICAL_HUMAN (Q13492) Phosphatidylinositol-binding clathrin assem... 32 1.2
9PICA_MOUSE (Q7M6Y3) Phosphatidylinositol-binding clathrin assemb... 32 1.2
10Y3593_NOCFA (Q5YTQ0) UPF0042 protein nfa35930 31 2.0
11ALKJ_PSEPU (Q9WWW2) Alcohol dehydrogenase [acceptor] (EC 1.1.99.-) 29 5.8
12FMT_MOUSE (Q9D799) Methionyl-tRNA formyltransferase, mitochondri... 29 5.8
13FMT_RAT (Q5I0C5) Methionyl-tRNA formyltransferase, mitochondrial... 29 7.6
14MNTH_LISMO (Q8Y773) Probable manganese transport protein mntH 29 7.6
15MNTH_LISMF (Q71ZP6) Probable manganese transport protein mntH 29 7.6
16MNTH_LISIN (Q92BT1) Probable manganese transport protein mntH 29 7.6
17ALKJ_PSEOL (Q00593) Alcohol dehydrogenase [acceptor] (EC 1.1.99.-) 28 9.9

>LEA14_SOYBN (P46519) Desiccation protectant protein Lea14 homolog|
          Length = 152

 Score = 42.0 bits (97), Expect = 9e-04
 Identities = 20/78 (25%), Positives = 37/78 (47%)
 Frame = +1

Query: 253 IDKVKDFIHDIGEKIEEAVGFGKPSADVARIHVPHIGLHRADLVVDVLIKNPNPVPIPLV 432
           +DK K+++       E+     KP A V  +    +     + +  V + NP   PIP+ 
Sbjct: 5   LDKAKNYV------AEKVTNMPKPEASVTDVDFKRVSRDSVEYLAKVSVSNPYSTPIPIC 58

Query: 433 DIDYLIDSDGRKLVAGLI 486
           +I Y + S G+++ +G I
Sbjct: 59  EIKYSLKSAGKEIASGTI 76



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>DRPD_CRAPL (P22241) Desiccation-related protein PCC27-45|
          Length = 151

 Score = 41.2 bits (95), Expect = 0.001
 Identities = 22/78 (28%), Positives = 39/78 (50%)
 Frame = +1

Query: 253 IDKVKDFIHDIGEKIEEAVGFGKPSADVARIHVPHIGLHRADLVVDVLIKNPNPVPIPLV 432
           ++K K+F+       E+     KP A V  + +  +G H    +  + ++NP    IP+ 
Sbjct: 5   MNKAKNFV------AEKVANVEKPKASVEDVDLKDVGRHGITYLTRICVENPYSASIPVG 58

Query: 433 DIDYLIDSDGRKLVAGLI 486
           +I Y + S GR +V+G I
Sbjct: 59  EIKYTLKSAGRVIVSGNI 76



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>LEA14_GOSHI (P46518) Late embryogenesis abundant protein Lea14-A|
          Length = 151

 Score = 40.8 bits (94), Expect = 0.002
 Identities = 21/78 (26%), Positives = 37/78 (47%)
 Frame = +1

Query: 253 IDKVKDFIHDIGEKIEEAVGFGKPSADVARIHVPHIGLHRADLVVDVLIKNPNPVPIPLV 432
           ++K KDF+      +++     KP A V+ + + H+     +    V + NP    IP+ 
Sbjct: 5   LEKAKDFV------VDKVANIKKPEASVSDVDLKHVSRECVEYGAKVSVSNPYSHSIPIC 58

Query: 433 DIDYLIDSDGRKLVAGLI 486
           +I Y   S GR + +G I
Sbjct: 59  EISYNFRSAGRGIASGTI 76



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>UC29_MAIZE (P80635) Unknown protein from 2D-PAGE of etiolated coleoptile (Spot|
           45) (Fragment)
          Length = 15

 Score = 36.6 bits (83), Expect = 0.036
 Identities = 15/15 (100%), Positives = 15/15 (100%)
 Frame = +1

Query: 403 NPNPVPIPLVDIDYL 447
           NPNPVPIPLVDIDYL
Sbjct: 1   NPNPVPIPLVDIDYL 15



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>LEA14_ARATH (O03983) Putative dessication-related protein LEA14|
          Length = 151

 Score = 36.2 bits (82), Expect = 0.048
 Identities = 20/78 (25%), Positives = 34/78 (43%)
 Frame = +1

Query: 253 IDKVKDFIHDIGEKIEEAVGFGKPSADVARIHVPHIGLHRADLVVDVLIKNPNPVPIPLV 432
           +DK KDF+ D      +     KP   V  + +  +     + +  V + NP    IP+ 
Sbjct: 5   LDKAKDFVAD------KLTAIPKPEGSVTDVDLKDVNRDSVEYLAKVSVTNPYSHSIPIC 58

Query: 433 DIDYLIDSDGRKLVAGLI 486
           +I +   S GR++  G I
Sbjct: 59  EISFTFHSAGREIGKGKI 76



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>DEF_SYNEL (Q8DIB4) Peptide deformylase (EC 3.5.1.88) (PDF) (Polypeptide|
           deformylase)
          Length = 188

 Score = 32.7 bits (73), Expect = 0.53
 Identities = 17/61 (27%), Positives = 33/61 (54%)
 Frame = +1

Query: 253 IDKVKDFIHDIGEKIEEAVGFGKPSADVARIHVPHIGLHRADLVVDVLIKNPNPVPIPLV 432
           + KV D I DI  K+ + +     SAD   +  P +G+++  LV+D+   +P   P+ ++
Sbjct: 34  VSKVDDSIRDIARKMLQTMY----SADGIGLAAPQVGINKQILVIDIHPDDPEAEPLVMI 89

Query: 433 D 435
           +
Sbjct: 90  N 90



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>PICA_RAT (O55012) Phosphatidylinositol-binding clathrin assembly protein|
           (Clathrin assembly lymphoid myeloid leukemia protein)
           (rCALM)
          Length = 640

 Score = 31.6 bits (70), Expect = 1.2
 Identities = 15/38 (39%), Positives = 25/38 (65%)
 Frame = +1

Query: 40  ASPLSISAGRDLKQASSDLASQPAAMSSSSDNPNEVTD 153
           ASP+S SAG  +   + D+ S P++ +S+S  PN++ D
Sbjct: 358 ASPVSTSAGGIMTAPAIDIFSTPSSSNSTSKLPNDLLD 395



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>PICAL_HUMAN (Q13492) Phosphatidylinositol-binding clathrin assembly protein|
           (Clathrin assembly lymphoid myeloid leukemia protein)
          Length = 652

 Score = 31.6 bits (70), Expect = 1.2
 Identities = 15/38 (39%), Positives = 25/38 (65%)
 Frame = +1

Query: 40  ASPLSISAGRDLKQASSDLASQPAAMSSSSDNPNEVTD 153
           ASP+S SAG  +   + D+ S P++ +S+S  PN++ D
Sbjct: 358 ASPVSTSAGGIMTAPAIDIFSTPSSSNSTSKLPNDLLD 395



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>PICA_MOUSE (Q7M6Y3) Phosphatidylinositol-binding clathrin assembly protein|
           (Clathrin assembly lymphoid myeloid leukemia) (CALM)
          Length = 660

 Score = 31.6 bits (70), Expect = 1.2
 Identities = 15/38 (39%), Positives = 25/38 (65%)
 Frame = +1

Query: 40  ASPLSISAGRDLKQASSDLASQPAAMSSSSDNPNEVTD 153
           ASP+S SAG  +   + D+ S P++ +S+S  PN++ D
Sbjct: 358 ASPVSTSAGGIMTAPAIDIFSTPSSSNSTSKLPNDLLD 395



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>Y3593_NOCFA (Q5YTQ0) UPF0042 protein nfa35930|
          Length = 316

 Score = 30.8 bits (68), Expect = 2.0
 Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 6/62 (9%)
 Frame = +1

Query: 253 IDKVKDFIHDIGEKIEEAVGFGKPSADVARIHVPHIGLH-----RADLVVDV-LIKNPNP 414
           ID  +  IH +  K+EEA G G P+A   ++ V   G        AD+V+DV  + NP+ 
Sbjct: 163 IDTTELSIHQLHRKLEEAYGGGAPAA--LQLTVQSFGFKYGVPLDADMVLDVRFLPNPHW 220

Query: 415 VP 420
           +P
Sbjct: 221 IP 222



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>ALKJ_PSEPU (Q9WWW2) Alcohol dehydrogenase [acceptor] (EC 1.1.99.-)|
          Length = 552

 Score = 29.3 bits (64), Expect = 5.8
 Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 5/76 (6%)
 Frame = +1

Query: 271 FIHDIGEKIEEAVGFGKPSADVARIHVPHIGLHRADLVVD----VLIKNPNPVPIPLVDI 438
           ++ D G KI  AVG+G               LH  DL+      + +K+ NP+  PL+D 
Sbjct: 364 YLKDHGRKI--AVGYGYT-------------LHICDLLPKSRGRIGLKSANPMDDPLIDP 408

Query: 439 DYLID-SDGRKLVAGL 483
           +YL D  D + ++AG+
Sbjct: 409 NYLSDPEDIKTMIAGI 424



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>FMT_MOUSE (Q9D799) Methionyl-tRNA formyltransferase, mitochondrial precursor|
           (EC 2.1.2.9) (MtFMT)
          Length = 386

 Score = 29.3 bits (64), Expect = 5.8
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = -1

Query: 108 WLAGKIGACLLQIPAGGDGKWRCGNQMKSNKRGWR 4
           WL G+   C  Q PAG DGK   G++++  K  WR
Sbjct: 11  WLMGRRPRCSCQAPAGFDGKDGRGSRVR-EKPPWR 44



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>FMT_RAT (Q5I0C5) Methionyl-tRNA formyltransferase, mitochondrial precursor|
           (EC 2.1.2.9) (MtFMT)
          Length = 385

 Score = 28.9 bits (63), Expect = 7.6
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = -1

Query: 108 WLAGKIGACLLQIPAGGDGKWRCGNQMKSNKRGWR 4
           WLAG+   C  Q PAG  GK R  ++++  K  WR
Sbjct: 11  WLAGRRPRCSCQSPAGFSGKDRRSSRVR-EKPPWR 44



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>MNTH_LISMO (Q8Y773) Probable manganese transport protein mntH|
          Length = 448

 Score = 28.9 bits (63), Expect = 7.6
 Identities = 15/23 (65%), Positives = 16/23 (69%)
 Frame = +1

Query: 40  ASPLSISAGRDLKQASSDLASQP 108
           AS L I  GRDL QASSD  S+P
Sbjct: 93  ASKLGIVTGRDLAQASSDHFSKP 115



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>MNTH_LISMF (Q71ZP6) Probable manganese transport protein mntH|
          Length = 448

 Score = 28.9 bits (63), Expect = 7.6
 Identities = 15/23 (65%), Positives = 16/23 (69%)
 Frame = +1

Query: 40  ASPLSISAGRDLKQASSDLASQP 108
           AS L I  GRDL QASSD  S+P
Sbjct: 93  ASKLGIVTGRDLAQASSDHFSKP 115



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>MNTH_LISIN (Q92BT1) Probable manganese transport protein mntH|
          Length = 448

 Score = 28.9 bits (63), Expect = 7.6
 Identities = 15/23 (65%), Positives = 16/23 (69%)
 Frame = +1

Query: 40  ASPLSISAGRDLKQASSDLASQP 108
           AS L I  GRDL QASSD  S+P
Sbjct: 93  ASKLGIVTGRDLAQASSDHFSKP 115



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>ALKJ_PSEOL (Q00593) Alcohol dehydrogenase [acceptor] (EC 1.1.99.-)|
          Length = 558

 Score = 28.5 bits (62), Expect = 9.9
 Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
 Frame = +1

Query: 271 FIHDIGEKIEEAVGFGKPSADVARIHVPHIGLHRADLVVDVLIKNPNPVPIPLVDIDYLI 450
           ++ D G KI    G+     D+       IGL           K+ NP+  PL+D +YL 
Sbjct: 364 YLKDHGRKIAGGYGYTLHICDLLPKSRGRIGL-----------KSANPLQPPLIDPNYLS 412

Query: 451 D-SDGRKLVAGL 483
           D  D + ++AG+
Sbjct: 413 DHEDIKTMIAGI 424


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,294,481
Number of Sequences: 219361
Number of extensions: 676434
Number of successful extensions: 2705
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 2647
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2703
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3362826254
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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