ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart53b07 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_450517.1| Oryza sativa (japonica cultivar-group), mRNA Length = 987 Score = 258 bits (130), Expect = 1e-65 Identities = 256/298 (85%) Strand = Plus / Plus Query: 131 ggccaggcgcagctgcagaacgggttctacacgggcaagtaccgcggcaacgacgtggag 190 ||||| ||||||||||||||||||||||||| |||||||| | ||| ||||||||||||| Sbjct: 73 ggccacgcgcagctgcagaacgggttctacaagggcaagtgcggcgccaacgacgtggag 132 Query: 191 gcggtcgtccagggtatcgtcaaggcccgcttcacccaggacagcgccatcgtcgcccac 250 || ||||| ||||| |||||| || |||||| ||| ||| | ||||||||||| || Sbjct: 133 gccgtcgtgcagggcatcgtccgtgctcgcttcgcccgcgacgcccccatcgtcgcctac 192 Query: 251 ctcctgcgcttgctgttccacgagtgcggcgtcaatggctgcgacggagggctgctgatc 310 ||||| ||| ||| |||||||||||||| ||||||||| |||||||| |||||||||||| Sbjct: 193 ctcctccgcatgcagttccacgagtgcgccgtcaatggatgcgacggcgggctgctgatc 252 Query: 311 gacggcaccggcacagagaagacggcaaagccgaaccagagcgtgaagggctacgacctc 370 ||||| | ||||| ||||||||||| |||||||| |||||||||||| ||||||||| Sbjct: 253 gacgggccaggcacggagaagacggcgtcgccgaacctgagcgtgaaggggtacgacctc 312 Query: 371 atcgctaccatcaagacggagctcgagaagcggtgccccggcgtcgtatcctgctccg 428 ||||| ||||||| ||||||| |||| ||||||||||||||| || |||||||||| Sbjct: 313 atcgccgacatcaaggcggagctggagaggcggtgccccggcgtggtgtcctgctccg 370
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 133 bits (67), Expect = 5e-28 Identities = 121/139 (87%) Strand = Plus / Minus Query: 290 tgcgacggagggctgctgatcgacggcaccggcacagagaagacggcaaagccgaaccag 349 |||||||| ||||||||||||||||| | ||||| ||||||||||| |||||||| | Sbjct: 9439378 tgcgacggcgggctgctgatcgacgggccaggcacggagaagacggcgtcgccgaacctg 9439319 Query: 350 agcgtgaagggctacgacctcatcgctaccatcaagacggagctcgagaagcggtgcccc 409 ||||||||||| |||||||||||||| ||||||| ||||||| |||| |||||||||| Sbjct: 9439318 agcgtgaaggggtacgacctcatcgccgacatcaaggcggagctggagaggcggtgcccc 9439259 Query: 410 ggcgtcgtatcctgctccg 428 ||||| || |||||||||| Sbjct: 9439258 ggcgtggtgtcctgctccg 9439240 Score = 133 bits (67), Expect = 5e-28 Identities = 121/139 (87%) Strand = Plus / Plus Query: 290 tgcgacggagggctgctgatcgacggcaccggcacagagaagacggcaaagccgaaccag 349 |||||||| ||||||||||||||||| | ||||| ||||||||||| |||||||| | Sbjct: 9433518 tgcgacggcgggctgctgatcgacgggccaggcacggagaagacggcgtcgccgaacctg 9433577 Query: 350 agcgtgaagggctacgacctcatcgctaccatcaagacggagctcgagaagcggtgcccc 409 ||||||||||| |||||||||||||| ||||||| ||||||| |||| |||||||||| Sbjct: 9433578 agcgtgaaggggtacgacctcatcgccgacatcaaggcggagctggagaggcggtgcccc 9433637 Query: 410 ggcgtcgtatcctgctccg 428 ||||| || |||||||||| Sbjct: 9433638 ggcgtggtgtcctgctccg 9433656 Score = 129 bits (65), Expect = 8e-27 Identities = 134/157 (85%) Strand = Plus / Minus Query: 131 ggccaggcgcagctgcagaacgggttctacacgggcaagtaccgcggcaacgacgtggag 190 ||||| ||||||||||||||||||||||||| |||||||| | ||| ||||||||||||| Sbjct: 9439618 ggccacgcgcagctgcagaacgggttctacaagggcaagtgcggcgccaacgacgtggag 9439559 Query: 191 gcggtcgtccagggtatcgtcaaggcccgcttcacccaggacagcgccatcgtcgcccac 250 ||||| || ||||| |||||| | |||||| ||| ||| | ||||||||||| || Sbjct: 9439558 gcggtggtgcagggcatcgtccgttcacgcttcgcccgcgacgcccccatcgtcgcctac 9439499 Query: 251 ctcctgcgcttgctgttccacgagtgcggcgtcaatg 287 ||||||||| ||| |||||||||||||| |||||||| Sbjct: 9439498 ctcctgcgcatgcagttccacgagtgcgccgtcaatg 9439462 Score = 129 bits (65), Expect = 8e-27 Identities = 134/157 (85%) Strand = Plus / Plus Query: 131 ggccaggcgcagctgcagaacgggttctacacgggcaagtaccgcggcaacgacgtggag 190 ||||| ||||||||||||||||||||||||| |||||||| | ||| ||||||||||||| Sbjct: 9433276 ggccacgcgcagctgcagaacgggttctacaagggcaagtgcggcgccaacgacgtggag 9433335 Query: 191 gcggtcgtccagggtatcgtcaaggcccgcttcacccaggacagcgccatcgtcgcccac 250 || ||||| ||||| |||||| || |||||| ||| ||| | ||||||||||| || Sbjct: 9433336 gccgtcgtgcagggcatcgtccgtgctcgcttcgcccgcgacgcccccatcgtcgcctac 9433395 Query: 251 ctcctgcgcttgctgttccacgagtgcggcgtcaatg 287 ||||| ||| ||| |||||||||||||| |||||||| Sbjct: 9433396 ctcctccgcatgcagttccacgagtgcgccgtcaatg 9433432
>dbj|AP005879.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBb0024J13 Length = 127614 Score = 133 bits (67), Expect = 5e-28 Identities = 121/139 (87%) Strand = Plus / Minus Query: 290 tgcgacggagggctgctgatcgacggcaccggcacagagaagacggcaaagccgaaccag 349 |||||||| ||||||||||||||||| | ||||| ||||||||||| |||||||| | Sbjct: 122792 tgcgacggcgggctgctgatcgacgggccaggcacggagaagacggcgtcgccgaacctg 122733 Query: 350 agcgtgaagggctacgacctcatcgctaccatcaagacggagctcgagaagcggtgcccc 409 ||||||||||| |||||||||||||| ||||||| ||||||| |||| |||||||||| Sbjct: 122732 agcgtgaaggggtacgacctcatcgccgacatcaaggcggagctggagaggcggtgcccc 122673 Query: 410 ggcgtcgtatcctgctccg 428 ||||| || |||||||||| Sbjct: 122672 ggcgtggtgtcctgctccg 122654 Score = 133 bits (67), Expect = 5e-28 Identities = 121/139 (87%) Strand = Plus / Plus Query: 290 tgcgacggagggctgctgatcgacggcaccggcacagagaagacggcaaagccgaaccag 349 |||||||| ||||||||||||||||| | ||||| ||||||||||| |||||||| | Sbjct: 116932 tgcgacggcgggctgctgatcgacgggccaggcacggagaagacggcgtcgccgaacctg 116991 Query: 350 agcgtgaagggctacgacctcatcgctaccatcaagacggagctcgagaagcggtgcccc 409 ||||||||||| |||||||||||||| ||||||| ||||||| |||| |||||||||| Sbjct: 116992 agcgtgaaggggtacgacctcatcgccgacatcaaggcggagctggagaggcggtgcccc 117051 Query: 410 ggcgtcgtatcctgctccg 428 ||||| || |||||||||| Sbjct: 117052 ggcgtggtgtcctgctccg 117070 Score = 129 bits (65), Expect = 8e-27 Identities = 134/157 (85%) Strand = Plus / Minus Query: 131 ggccaggcgcagctgcagaacgggttctacacgggcaagtaccgcggcaacgacgtggag 190 ||||| ||||||||||||||||||||||||| |||||||| | ||| ||||||||||||| Sbjct: 123032 ggccacgcgcagctgcagaacgggttctacaagggcaagtgcggcgccaacgacgtggag 122973 Query: 191 gcggtcgtccagggtatcgtcaaggcccgcttcacccaggacagcgccatcgtcgcccac 250 ||||| || ||||| |||||| | |||||| ||| ||| | ||||||||||| || Sbjct: 122972 gcggtggtgcagggcatcgtccgttcacgcttcgcccgcgacgcccccatcgtcgcctac 122913 Query: 251 ctcctgcgcttgctgttccacgagtgcggcgtcaatg 287 ||||||||| ||| |||||||||||||| |||||||| Sbjct: 122912 ctcctgcgcatgcagttccacgagtgcgccgtcaatg 122876 Score = 129 bits (65), Expect = 8e-27 Identities = 134/157 (85%) Strand = Plus / Plus Query: 131 ggccaggcgcagctgcagaacgggttctacacgggcaagtaccgcggcaacgacgtggag 190 ||||| ||||||||||||||||||||||||| |||||||| | ||| ||||||||||||| Sbjct: 116690 ggccacgcgcagctgcagaacgggttctacaagggcaagtgcggcgccaacgacgtggag 116749 Query: 191 gcggtcgtccagggtatcgtcaaggcccgcttcacccaggacagcgccatcgtcgcccac 250 || ||||| ||||| |||||| || |||||| ||| ||| | ||||||||||| || Sbjct: 116750 gccgtcgtgcagggcatcgtccgtgctcgcttcgcccgcgacgcccccatcgtcgcctac 116809 Query: 251 ctcctgcgcttgctgttccacgagtgcggcgtcaatg 287 ||||| ||| ||| |||||||||||||| |||||||| Sbjct: 116810 ctcctccgcatgcagttccacgagtgcgccgtcaatg 116846
>dbj|AP005593.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0692F07 Length = 141544 Score = 133 bits (67), Expect = 5e-28 Identities = 121/139 (87%) Strand = Plus / Minus Query: 290 tgcgacggagggctgctgatcgacggcaccggcacagagaagacggcaaagccgaaccag 349 |||||||| ||||||||||||||||| | ||||| ||||||||||| |||||||| | Sbjct: 3014 tgcgacggcgggctgctgatcgacgggccaggcacggagaagacggcgtcgccgaacctg 2955 Query: 350 agcgtgaagggctacgacctcatcgctaccatcaagacggagctcgagaagcggtgcccc 409 ||||||||||| |||||||||||||| ||||||| ||||||| |||| |||||||||| Sbjct: 2954 agcgtgaaggggtacgacctcatcgccgacatcaaggcggagctggagaggcggtgcccc 2895 Query: 410 ggcgtcgtatcctgctccg 428 ||||| || |||||||||| Sbjct: 2894 ggcgtggtgtcctgctccg 2876 Score = 129 bits (65), Expect = 8e-27 Identities = 134/157 (85%) Strand = Plus / Minus Query: 131 ggccaggcgcagctgcagaacgggttctacacgggcaagtaccgcggcaacgacgtggag 190 ||||| ||||||||||||||||||||||||| |||||||| | ||| ||||||||||||| Sbjct: 3254 ggccacgcgcagctgcagaacgggttctacaagggcaagtgcggcgccaacgacgtggag 3195 Query: 191 gcggtcgtccagggtatcgtcaaggcccgcttcacccaggacagcgccatcgtcgcccac 250 ||||| || ||||| |||||| | |||||| ||| ||| | ||||||||||| || Sbjct: 3194 gcggtggtgcagggcatcgtccgttcacgcttcgcccgcgacgcccccatcgtcgcctac 3135 Query: 251 ctcctgcgcttgctgttccacgagtgcggcgtcaatg 287 ||||||||| ||| |||||||||||||| |||||||| Sbjct: 3134 ctcctgcgcatgcagttccacgagtgcgccgtcaatg 3098
>tpe|BN000650.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx121 gene for class III peroxidase 121 precursor, exons 1-2 Length = 1070 Score = 133 bits (67), Expect = 5e-28 Identities = 121/139 (87%) Strand = Plus / Plus Query: 290 tgcgacggagggctgctgatcgacggcaccggcacagagaagacggcaaagccgaaccag 349 |||||||| ||||||||||||||||| | ||||| ||||||||||| |||||||| | Sbjct: 315 tgcgacggcgggctgctgatcgacgggccaggcacggagaagacggcgtcgccgaacctg 374 Query: 350 agcgtgaagggctacgacctcatcgctaccatcaagacggagctcgagaagcggtgcccc 409 ||||||||||| |||||||||||||| ||||||| ||||||| |||| |||||||||| Sbjct: 375 agcgtgaaggggtacgacctcatcgccgacatcaaggcggagctggagaggcggtgcccc 434 Query: 410 ggcgtcgtatcctgctccg 428 ||||| || |||||||||| Sbjct: 435 ggcgtggtgtcctgctccg 453 Score = 129 bits (65), Expect = 8e-27 Identities = 134/157 (85%) Strand = Plus / Plus Query: 131 ggccaggcgcagctgcagaacgggttctacacgggcaagtaccgcggcaacgacgtggag 190 ||||| ||||||||||||||||||||||||| |||||||| | ||| ||||||||||||| Sbjct: 73 ggccacgcgcagctgcagaacgggttctacaagggcaagtgcggcgccaacgacgtggag 132 Query: 191 gcggtcgtccagggtatcgtcaaggcccgcttcacccaggacagcgccatcgtcgcccac 250 || ||||| ||||| |||||| || |||||| ||| ||| | ||||||||||| || Sbjct: 133 gccgtcgtgcagggcatcgtccgtgctcgcttcgcccgcgacgcccccatcgtcgcctac 192 Query: 251 ctcctgcgcttgctgttccacgagtgcggcgtcaatg 287 ||||| ||| ||| |||||||||||||| |||||||| Sbjct: 193 ctcctccgcatgcagttccacgagtgcgccgtcaatg 229
>tpe|BN000649.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx120 gene for class III peroxidase 120 precursor, exons 1-2 Length = 1077 Score = 133 bits (67), Expect = 5e-28 Identities = 121/139 (87%) Strand = Plus / Plus Query: 290 tgcgacggagggctgctgatcgacggcaccggcacagagaagacggcaaagccgaaccag 349 |||||||| ||||||||||||||||| | ||||| ||||||||||| |||||||| | Sbjct: 316 tgcgacggcgggctgctgatcgacgggccaggcacggagaagacggcgtcgccgaacctg 375 Query: 350 agcgtgaagggctacgacctcatcgctaccatcaagacggagctcgagaagcggtgcccc 409 ||||||||||| |||||||||||||| ||||||| ||||||| |||| |||||||||| Sbjct: 376 agcgtgaaggggtacgacctcatcgccgacatcaaggcggagctggagaggcggtgcccc 435 Query: 410 ggcgtcgtatcctgctccg 428 ||||| || |||||||||| Sbjct: 436 ggcgtggtgtcctgctccg 454 Score = 129 bits (65), Expect = 8e-27 Identities = 134/157 (85%) Strand = Plus / Plus Query: 131 ggccaggcgcagctgcagaacgggttctacacgggcaagtaccgcggcaacgacgtggag 190 ||||| ||||||||||||||||||||||||| |||||||| | ||| ||||||||||||| Sbjct: 76 ggccacgcgcagctgcagaacgggttctacaagggcaagtgcggcgccaacgacgtggag 135 Query: 191 gcggtcgtccagggtatcgtcaaggcccgcttcacccaggacagcgccatcgtcgcccac 250 ||||| || ||||| |||||| | |||||| ||| ||| | ||||||||||| || Sbjct: 136 gcggtggtgcagggcatcgtccgttcacgcttcgcccgcgacgcccccatcgtcgcctac 195 Query: 251 ctcctgcgcttgctgttccacgagtgcggcgtcaatg 287 ||||||||| ||| |||||||||||||| |||||||| Sbjct: 196 ctcctgcgcatgcagttccacgagtgcgccgtcaatg 232
>ref|NM_183638.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1044 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Plus Query: 395 gagaagcggtgccccggcgtcgtatcctgctccg 428 |||||||||||||||||||| || |||||||||| Sbjct: 349 gagaagcggtgccccggcgtggtgtcctgctccg 382
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Minus Query: 395 gagaagcggtgccccggcgtcgtatcctgctccg 428 |||||||||||||||||||| || |||||||||| Sbjct: 10747663 gagaagcggtgccccggcgtggtgtcctgctccg 10747630 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 87 tggcggtggtgctcgccgtcgccg 110 ||||||||| |||||||||||||| Sbjct: 8205820 tggcggtggcgctcgccgtcgccg 8205797
>dbj|AP002820.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0702D12 Length = 137332 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Minus Query: 395 gagaagcggtgccccggcgtcgtatcctgctccg 428 |||||||||||||||||||| || |||||||||| Sbjct: 70477 gagaagcggtgccccggcgtggtgtcctgctccg 70444
>dbj|AK104781.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-039-C08, full insert sequence Length = 1331 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Plus Query: 395 gagaagcggtgccccggcgtcgtatcctgctccg 428 |||||||||||||||||||| || |||||||||| Sbjct: 436 gagaagcggtgccccggcgtggtgtcctgctccg 469
>dbj|AK104388.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-201-G02, full insert sequence Length = 1331 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Plus Query: 395 gagaagcggtgccccggcgtcgtatcctgctccg 428 |||||||||||||||||||| || |||||||||| Sbjct: 436 gagaagcggtgccccggcgtggtgtcctgctccg 469
>dbj|AK068755.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013159G18, full insert sequence Length = 1345 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Plus Query: 395 gagaagcggtgccccggcgtcgtatcctgctccg 428 |||||||||||||||||||| || |||||||||| Sbjct: 430 gagaagcggtgccccggcgtggtgtcctgctccg 463
>tpe|BN000540.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx11 gene for class III peroxidase 11 precursor, exons 1-2 Length = 1255 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Plus Query: 395 gagaagcggtgccccggcgtcgtatcctgctccg 428 |||||||||||||||||||| || |||||||||| Sbjct: 560 gagaagcggtgccccggcgtggtgtcctgctccg 593
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 46.1 bits (23), Expect = 0.093 Identities = 38/43 (88%) Strand = Plus / Minus Query: 382 caagacggagctcgagaagcggtgccccggcgtcgtatcctgc 424 |||| ||||||||||| | | ||||||||||||||| |||||| Sbjct: 4653135 caaggcggagctcgaggaccagtgccccggcgtcgtctcctgc 4653093
>dbj|AK061040.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-205-D01, full insert sequence Length = 1132 Score = 46.1 bits (23), Expect = 0.093 Identities = 38/43 (88%) Strand = Plus / Plus Query: 382 caagacggagctcgagaagcggtgccccggcgtcgtatcctgc 424 |||| ||||||||||| | | ||||||||||||||| |||||| Sbjct: 376 caaggcggagctcgaggaccagtgccccggcgtcgtctcctgc 418
>tpe|BN000666.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx137 gene for class III peroxidase 137 precursor, exons 1-4 Length = 1273 Score = 46.1 bits (23), Expect = 0.093 Identities = 38/43 (88%) Strand = Plus / Plus Query: 382 caagacggagctcgagaagcggtgccccggcgtcgtatcctgc 424 |||| ||||||||||| | | ||||||||||||||| |||||| Sbjct: 431 caaggcggagctcgaggaccagtgccccggcgtcgtctcctgc 473
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 46.1 bits (23), Expect = 0.093 Identities = 38/43 (88%) Strand = Plus / Minus Query: 382 caagacggagctcgagaagcggtgccccggcgtcgtatcctgc 424 |||| ||||||||||| | | ||||||||||||||| |||||| Sbjct: 4653116 caaggcggagctcgaggaccagtgccccggcgtcgtctcctgc 4653074
>emb|AL928750.3|CNS08CBN Oryza sativa chromosome 12, . BAC OSJNBa0063C08 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 147355 Score = 46.1 bits (23), Expect = 0.093 Identities = 38/43 (88%) Strand = Plus / Plus Query: 382 caagacggagctcgagaagcggtgccccggcgtcgtatcctgc 424 |||| ||||||||||| | | ||||||||||||||| |||||| Sbjct: 98992 caaggcggagctcgaggaccagtgccccggcgtcgtctcctgc 99034
>ref|XM_476368.1| Oryza sativa (japonica cultivar-group), mRNA Length = 987 Score = 44.1 bits (22), Expect = 0.37 Identities = 25/26 (96%) Strand = Plus / Plus Query: 136 ggcgcagctgcagaacgggttctaca 161 ||||||||||||| |||||||||||| Sbjct: 78 ggcgcagctgcagtacgggttctaca 103
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 44.1 bits (22), Expect = 0.37 Identities = 25/26 (96%) Strand = Plus / Plus Query: 136 ggcgcagctgcagaacgggttctaca 161 ||||||||||||| |||||||||||| Sbjct: 263545 ggcgcagctgcagtacgggttctaca 263570
>dbj|AP005187.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0446F04 Length = 175390 Score = 44.1 bits (22), Expect = 0.37 Identities = 25/26 (96%) Strand = Plus / Plus Query: 136 ggcgcagctgcagaacgggttctaca 161 ||||||||||||| |||||||||||| Sbjct: 98409 ggcgcagctgcagtacgggttctaca 98434
>dbj|AP004673.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0617C02 Length = 135605 Score = 44.1 bits (22), Expect = 0.37 Identities = 25/26 (96%) Strand = Plus / Plus Query: 136 ggcgcagctgcagaacgggttctaca 161 ||||||||||||| |||||||||||| Sbjct: 15544 ggcgcagctgcagtacgggttctaca 15569
>emb|AJ457972.1|SOL457972 Streptomyces olivaceoviridis xycE gene, xycK gene and xycH gene Length = 5292 Score = 44.1 bits (22), Expect = 0.37 Identities = 25/26 (96%) Strand = Plus / Plus Query: 85 gctggcggtggtgctcgccgtcgccg 110 |||||||||| ||||||||||||||| Sbjct: 2643 gctggcggtgctgctcgccgtcgccg 2668
>tpe|BN000625.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx96 gene for class III peroxidase 96 precursor, exons 1-3 Length = 1183 Score = 44.1 bits (22), Expect = 0.37 Identities = 25/26 (96%) Strand = Plus / Plus Query: 136 ggcgcagctgcagaacgggttctaca 161 ||||||||||||| |||||||||||| Sbjct: 78 ggcgcagctgcagtacgggttctaca 103
>gb|AC166316.2| Mus musculus chromosome 19, clone RP23-466L5, complete sequence Length = 185237 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 10 ataaatcaagcacaccaagag 30 ||||||||||||||||||||| Sbjct: 72545 ataaatcaagcacaccaagag 72565
>ref|XM_479755.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1398 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 400 gcggtgccccggcgtcgtatcctgc 424 |||||||||||||||||| |||||| Sbjct: 399 gcggtgccccggcgtcgtctcctgc 423
>gb|CP000082.1| Psychrobacter arcticus 273-4, complete genome Length = 2650701 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 28 gaggtaactacccaatcagct 48 ||||||||||||||||||||| Sbjct: 752579 gaggtaactacccaatcagct 752599
>emb|CR555306.1| Azoarcus sp. EbN1 complete genome Length = 4296230 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 83 gtgctggcggtggtgctcgcc 103 ||||||||||||||||||||| Sbjct: 2910945 gtgctggcggtggtgctcgcc 2910965
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 86 ctggcggtggtgctcgccgtcgccgtgct 114 |||||||||||| ||| |||||||||||| Sbjct: 1819592 ctggcggtggtggtcggcgtcgccgtgct 1819564
>gb|AC159982.4| Mus musculus chromosome 19, clone RP24-383P9, complete sequence Length = 198886 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 10 ataaatcaagcacaccaagag 30 ||||||||||||||||||||| Sbjct: 117449 ataaatcaagcacaccaagag 117469
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 400 gcggtgccccggcgtcgtatcctgc 424 |||||||||||||||||| |||||| Sbjct: 691230 gcggtgccccggcgtcgtctcctgc 691254 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 91 ggtggtgctcgccgtcgccg 110 |||||||||||||||||||| Sbjct: 27490064 ggtggtgctcgccgtcgccg 27490083
>dbj|AP004566.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0498H04 Length = 151046 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 400 gcggtgccccggcgtcgtatcctgc 424 |||||||||||||||||| |||||| Sbjct: 118608 gcggtgccccggcgtcgtctcctgc 118632
>dbj|AK069503.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023019J18, full insert sequence Length = 1398 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 400 gcggtgccccggcgtcgtatcctgc 424 |||||||||||||||||| |||||| Sbjct: 399 gcggtgccccggcgtcgtctcctgc 423
>tpe|BN000646.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx117 gene for class III peroxidase 117 precursor, exon 1 Length = 948 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 400 gcggtgccccggcgtcgtatcctgc 424 |||||||||||||||||| |||||| Sbjct: 336 gcggtgccccggcgtcgtctcctgc 360
>gb|AC171179.2| Gallus gallus BAC clone CH261-31A13 from chromosome ul, complete sequence Length = 247380 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 61 catggggcacacgggggcagc 81 ||||||||||||||||||||| Sbjct: 40530 catggggcacacgggggcagc 40550
>gb|AC122119.11| Mus musculus chromosome 19, clone RP24-252F4, complete sequence Length = 183160 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 10 ataaatcaagcacaccaagag 30 ||||||||||||||||||||| Sbjct: 95874 ataaatcaagcacaccaagag 95854
>ref|XM_476095.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 693 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 88 ggcggtggtgctcgccgtcgccgt 111 ||||||||||||||||| |||||| Sbjct: 381 ggcggtggtgctcgccggcgccgt 404
>ref|NM_188793.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 684 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 87 tggcggtggtgctcgccgtcgccg 110 ||||||||| |||||||||||||| Sbjct: 50 tggcggtggcgctcgccgtcgccg 73
>gb|AC135427.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0617H07, complete sequence Length = 114135 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 88 ggcggtggtgctcgccgtcgccgt 111 ||||||||||||||||| |||||| Sbjct: 111390 ggcggtggtgctcgccggcgccgt 111413
>ref|XM_483657.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1103 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 91 ggtggtgctcgccgtcgccg 110 |||||||||||||||||||| Sbjct: 44 ggtggtgctcgccgtcgccg 63
>ref|XM_507604.1| PREDICTED Oryza sativa (japonica cultivar-group), P0544G09.31 mRNA Length = 1131 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 91 ggtggtgctcgccgtcgccg 110 |||||||||||||||||||| Sbjct: 76 ggtggtgctcgccgtcgccg 95
>ref|XM_507322.2| PREDICTED Oryza sativa (japonica cultivar-group), P0544G09.31 mRNA Length = 1136 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 91 ggtggtgctcgccgtcgccg 110 |||||||||||||||||||| Sbjct: 77 ggtggtgctcgccgtcgccg 96
>gb|AC132493.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0636E04, complete sequence Length = 141171 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 88 ggcggtggtgctcgccgtcgccgt 111 ||||||||||||||||| |||||| Sbjct: 42200 ggcggtggtgctcgccggcgccgt 42223
>ref|XM_414861.1| PREDICTED: Gallus gallus similar to zinc finger, DHHC domain containing 4 (LOC416561), mRNA Length = 2220 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 95 gtgctcgccgtcgccgtgct 114 |||||||||||||||||||| Sbjct: 1333 gtgctcgccgtcgccgtgct 1352
>gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome Length = 5650368 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 278 ggcgtcaatggctgcgacgg 297 |||||||||||||||||||| Sbjct: 4329545 ggcgtcaatggctgcgacgg 4329526
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 5.7 Identities = 41/48 (85%) Strand = Plus / Plus Query: 353 gtgaagggctacgacctcatcgctaccatcaagacggagctcgagaag 400 ||||||||||||||| |||||| |||||||||||||| |||||| Sbjct: 2860923 gtgaagggctacgacatcatcgacgagatcaagacggagctggagaag 2860970
>gb|AC007789.1| Oryza sativa BAC OSJNBa0049B20 genomic sequence, complete sequence Length = 182756 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 87 tggcggtggtgctcgccgtcgccg 110 ||||||||| |||||||||||||| Sbjct: 169941 tggcggtggcgctcgccgtcgccg 169918
>emb|BX294151.1| Pirellula sp. strain 1 complete genome; segment 19/24 Length = 295650 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 224 acccaggacagcgccatcgt 243 |||||||||||||||||||| Sbjct: 116627 acccaggacagcgccatcgt 116646
>emb|AL445065.1|TACID3 Thermoplasma acidophilum complete genome; segment 3/5 Length = 316900 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 256 gcgcttgctgttccacgagt 275 |||||||||||||||||||| Sbjct: 272291 gcgcttgctgttccacgagt 272310
>emb|AL663110.6| Mouse DNA sequence from clone RP23-224P22 on chromosome 11 Contains part of the Abca13 gene for ATP-binding cassette sub-family A (ABC1) member 13, complete sequence Length = 158039 Score = 40.1 bits (20), Expect = 5.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 25 caagaggtaactacccaatcagctagct 52 ||||||||||||| ||||||||||||| Sbjct: 73958 caagaggtaactagtcaatcagctagct 73985
>dbj|AK128574.1| Homo sapiens cDNA FLJ46733 fis, clone TRACH3020137 Length = 3064 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 73 gggggcagcagtgctggcggtggt 96 ||||||||||||||||| |||||| Sbjct: 1600 gggggcagcagtgctggtggtggt 1577
>gb|CP000138.1| Rhizobium etli CFN 42 plasmid p42f, complete sequence Length = 642517 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 85 gctggcggtggtgctcgccg 104 |||||||||||||||||||| Sbjct: 313594 gctggcggtggtgctcgccg 313575
>emb|BX933479.2| Gallus gallus finished cDNA, clone ChEST51c18 Length = 1003 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 95 gtgctcgccgtcgccgtgct 114 |||||||||||||||||||| Sbjct: 125 gtgctcgccgtcgccgtgct 144
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 88 ggcggtggtgctcgccgtcgccgt 111 ||||||||||||||||| |||||| Sbjct: 5904626 ggcggtggtgctcgccggcgccgt 5904649
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 5.7 Identities = 41/48 (85%) Strand = Plus / Plus Query: 353 gtgaagggctacgacctcatcgctaccatcaagacggagctcgagaag 400 ||||||||||||||| |||||| |||||||||||||| |||||| Sbjct: 2861034 gtgaagggctacgacatcatcgacgagatcaagacggagctggagaag 2861081
>emb|BX833266.1|CNS0A0EZ Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL41ZH10 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 548 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 325 agagaagacggcaaagccgaacca 348 ||||||||||||||||||| |||| Sbjct: 196 agagaagacggcaaagccggacca 173
>gb|AC005840.2|AC005840 Homo sapiens complete sequence of a PAC clone RP1-102E24 containing SYB1, CD27, and SCNN1A genes Length = 140026 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 73 gggggcagcagtgctggcggtggt 96 ||||||||||||||||| |||||| Sbjct: 43183 gggggcagcagtgctggtggtggt 43160
>gb|AC137635.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0038D20, from chromosome 3, complete sequence Length = 165395 Score = 40.1 bits (20), Expect = 5.7 Identities = 41/48 (85%) Strand = Plus / Plus Query: 353 gtgaagggctacgacctcatcgctaccatcaagacggagctcgagaag 400 ||||||||||||||| |||||| |||||||||||||| |||||| Sbjct: 132879 gtgaagggctacgacatcatcgacgagatcaagacggagctggagaag 132926
>dbj|AP002865.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0034C11 Length = 139399 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 87 tggcggtggtgctcgccgtcgccg 110 ||||||||| |||||||||||||| Sbjct: 123538 tggcggtggcgctcgccgtcgccg 123515
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 304 gctgatcgacggcaccggca 323 |||||||||||||||||||| Sbjct: 1343734 gctgatcgacggcaccggca 1343753 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 84 tgctggcggtggtgctcgccgtcg 107 ||||||||| |||||||||||||| Sbjct: 1020681 tgctggcggcggtgctcgccgtcg 1020704
>dbj|AP004704.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0544G09 Length = 137481 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 91 ggtggtgctcgccgtcgccg 110 |||||||||||||||||||| Sbjct: 116859 ggtggtgctcgccgtcgccg 116878
>dbj|AP006265.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1112_E06 Length = 95069 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 91 ggtggtgctcgccgtcgccg 110 |||||||||||||||||||| Sbjct: 53313 ggtggtgctcgccgtcgccg 53332
>dbj|AK102617.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033099F17, full insert sequence Length = 1136 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 91 ggtggtgctcgccgtcgccg 110 |||||||||||||||||||| Sbjct: 77 ggtggtgctcgccgtcgccg 96
>dbj|AK070875.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023075H05, full insert sequence Length = 1898 Score = 40.1 bits (20), Expect = 5.7 Identities = 41/48 (85%) Strand = Plus / Plus Query: 353 gtgaagggctacgacctcatcgctaccatcaagacggagctcgagaag 400 ||||||||||||||| |||||| |||||||||||||| |||||| Sbjct: 315 gtgaagggctacgacatcatcgacgagatcaagacggagctggagaag 362
>dbj|AK061053.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-205-G07, full insert sequence Length = 1131 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 91 ggtggtgctcgccgtcgccg 110 |||||||||||||||||||| Sbjct: 76 ggtggtgctcgccgtcgccg 95
>dbj|AK061046.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-205-E11, full insert sequence Length = 1039 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 87 tggcggtggtgctcgccgtcgccg 110 ||||||||| |||||||||||||| Sbjct: 150 tggcggtggcgctcgccgtcgccg 173
>dbj|AK060043.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-304-F02, full insert sequence Length = 1103 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 91 ggtggtgctcgccgtcgccg 110 |||||||||||||||||||| Sbjct: 44 ggtggtgctcgccgtcgccg 63
>tpe|BN000565.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx36 gene for class III peroxidase 36 precursor, exons 1-2 Length = 1564 Score = 40.1 bits (20), Expect = 5.7 Identities = 41/48 (85%) Strand = Plus / Plus Query: 353 gtgaagggctacgacctcatcgctaccatcaagacggagctcgagaag 400 ||||||||||||||| |||||| |||||||||||||| |||||| Sbjct: 395 gtgaagggctacgacatcatcgacgagatcaagacggagctggagaag 442
>gb|AE014295.3| Bifidobacterium longum NCC2705, complete genome Length = 2256640 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 378 ccatcaagacggagctcgag 397 |||||||||||||||||||| Sbjct: 360153 ccatcaagacggagctcgag 360172 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,325,101 Number of Sequences: 3902068 Number of extensions: 2325101 Number of successful extensions: 50185 Number of sequences better than 10.0: 69 Number of HSP's better than 10.0 without gapping: 66 Number of HSP's successfully gapped in prelim test: 5 Number of HSP's that attempted gapping in prelim test: 49167 Number of HSP's gapped (non-prelim): 1014 length of query: 428 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 406 effective length of database: 17,147,199,772 effective search space: 6961763107432 effective search space used: 6961763107432 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
