Clone Name | bart53b05 |
---|---|
Clone Library Name | barley_pub |
>gb|AY968588.1| Triticum aestivum ice recrystallization inhibition protein 1 precursor, mRNA, complete cds Length = 1079 Score = 61.9 bits (31), Expect = 2e-06 Identities = 85/103 (82%) Strand = Plus / Plus Query: 256 agcggccgtgtgacagcgctgcgcctccccaggcgcggcctcacggggcccatcccaggg 315 ||||||||||| || |||||||| ||||| ||| ||||||| ||||| ||||||||| Sbjct: 284 agcggccgtgtcacggcgctgcggctccctgggcacggcctcgtggggctcatcccagga 343 Query: 316 acctcccttgccggccttgcacggctcgaggatctcgaccttg 358 | ||| | || |||||||||||||| ||||| ||| |||||| Sbjct: 344 gcatccttggcaggccttgcacggctagaggagctcaaccttg 386
>gb|AY968589.1| Triticum aestivum ice recrystallization inhibition protein 2 precursor, mRNA, complete cds Length = 1596 Score = 52.0 bits (26), Expect = 0.002 Identities = 38/42 (90%) Strand = Plus / Plus Query: 291 cggcctcacggggcccatcccagggacctcccttgccggcct 332 ||||||| |||||||||||||||| |||||||||| ||||| Sbjct: 249 cggcctcgcggggcccatcccaggagcctcccttgcgggcct 290
>gb|BT024033.1| Zea mays clone EL01N0423B02 mRNA sequence Length = 2283 Score = 50.1 bits (25), Expect = 0.007 Identities = 43/49 (87%) Strand = Plus / Plus Query: 413 agaacctcaccacgttgattctcaccaagaattttggtggtgaggagct 461 |||||||||||||| | || |||||||||||||||| || |||||||| Sbjct: 124 agaacctcaccacgcttatcctcaccaagaattttgtcggggaggagct 172
>emb|Z69381.1|SCCXIV39K S.cerevisiae 38,855 bp segment of chromosome XIV Length = 38855 Score = 46.1 bits (23), Expect = 0.11 Identities = 26/27 (96%) Strand = Plus / Plus Query: 78 ccttgtagtcttcttggcgtttctctt 104 ||||||||||||||||| ||||||||| Sbjct: 27605 ccttgtagtcttcttggtgtttctctt 27631
>emb|Z71506.1|SCYNL230C S.cerevisiae chromosome XIV reading frame ORF YNL230c Length = 2094 Score = 46.1 bits (23), Expect = 0.11 Identities = 26/27 (96%) Strand = Plus / Plus Query: 78 ccttgtagtcttcttggcgtttctctt 104 ||||||||||||||||| ||||||||| Sbjct: 1069 ccttgtagtcttcttggtgtttctctt 1095
>gb|DQ332669.1| Synthetic construct Saccharomyces cerevisiae clone FLH144475.01X ELA1 gene, complete sequence Length = 1140 Score = 46.1 bits (23), Expect = 0.11 Identities = 26/27 (96%) Strand = Plus / Minus Query: 78 ccttgtagtcttcttggcgtttctctt 104 ||||||||||||||||| ||||||||| Sbjct: 552 ccttgtagtcttcttggtgtttctctt 526
>ref|NM_186147.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3033 Score = 44.1 bits (22), Expect = 0.42 Identities = 31/34 (91%) Strand = Plus / Plus Query: 413 agaacctcaccacgttgattctcaccaagaattt 446 ||||||||||||| |||| |||||||||||||| Sbjct: 1178 agaacctcaccacactgatcctcaccaagaattt 1211 Score = 42.1 bits (21), Expect = 1.7 Identities = 36/41 (87%) Strand = Plus / Plus Query: 271 gcgctgcgcctccccaggcgcggcctcacggggcccatccc 311 ||||||||||||||| |||| || ||| |||||||||||| Sbjct: 238 gcgctgcgcctccccgggcgaggtctcgaggggcccatccc 278
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 44.1 bits (22), Expect = 0.42 Identities = 31/34 (91%) Strand = Plus / Plus Query: 413 agaacctcaccacgttgattctcaccaagaattt 446 ||||||||||||| |||| |||||||||||||| Sbjct: 425274 agaacctcaccacactgatcctcaccaagaattt 425307 Score = 42.1 bits (21), Expect = 1.7 Identities = 36/41 (87%) Strand = Plus / Plus Query: 271 gcgctgcgcctccccaggcgcggcctcacggggcccatccc 311 ||||||||||||||| |||| || ||| |||||||||||| Sbjct: 424334 gcgctgcgcctccccgggcgaggtctcgaggggcccatccc 424374 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 364 aacaatttacaaaacatctc 383 |||||||||||||||||||| Sbjct: 22474510 aacaatttacaaaacatctc 22474491
>dbj|AP004342.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0585H11 Length = 149371 Score = 44.1 bits (22), Expect = 0.42 Identities = 31/34 (91%) Strand = Plus / Plus Query: 413 agaacctcaccacgttgattctcaccaagaattt 446 ||||||||||||| |||| |||||||||||||| Sbjct: 27438 agaacctcaccacactgatcctcaccaagaattt 27471 Score = 42.1 bits (21), Expect = 1.7 Identities = 36/41 (87%) Strand = Plus / Plus Query: 271 gcgctgcgcctccccaggcgcggcctcacggggcccatccc 311 ||||||||||||||| |||| || ||| |||||||||||| Sbjct: 26498 gcgctgcgcctccccgggcgaggtctcgaggggcccatccc 26538
>dbj|AK121984.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033108O10, full insert sequence Length = 3392 Score = 44.1 bits (22), Expect = 0.42 Identities = 31/34 (91%) Strand = Plus / Plus Query: 413 agaacctcaccacgttgattctcaccaagaattt 446 ||||||||||||| |||| |||||||||||||| Sbjct: 1304 agaacctcaccacactgatcctcaccaagaattt 1337 Score = 42.1 bits (21), Expect = 1.7 Identities = 36/41 (87%) Strand = Plus / Plus Query: 271 gcgctgcgcctccccaggcgcggcctcacggggcccatccc 311 ||||||||||||||| |||| || ||| |||||||||||| Sbjct: 364 gcgctgcgcctccccgggcgaggtctcgaggggcccatccc 404
>dbj|AK103166.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033121E13, full insert sequence Length = 2958 Score = 44.1 bits (22), Expect = 0.42 Identities = 31/34 (91%) Strand = Plus / Plus Query: 413 agaacctcaccacgttgattctcaccaagaattt 446 ||||||||||||| |||| |||||||||||||| Sbjct: 842 agaacctcaccacactgatcctcaccaagaattt 875
>emb|AL160059.7| Human DNA sequence from clone RP11-94G15 on chromosome 1 Contains the 5' end of the CACNA1E gene for calcium channel voltage-dependent alpha 1E subunit, complete sequence Length = 153926 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 290 gcggcctcacggggcccatcc 310 ||||||||||||||||||||| Sbjct: 33108 gcggcctcacggggcccatcc 33088
>gb|AC146750.32| Medicago truncatula clone mth2-16o6, complete sequence Length = 114206 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 347 atctcgaccttggctccaaca 367 ||||||||||||||||||||| Sbjct: 46898 atctcgaccttggctccaaca 46878
>emb|CR382128.1| Yarrowia lipolytica chromosome B of strain CLIB122 of Yarrowia lipolytica Length = 3066374 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 314 ggacctcccttgccggccttg 334 ||||||||||||||||||||| Sbjct: 2899847 ggacctcccttgccggccttg 2899827
>gb|BC027167.1| Mus musculus zinc finger protein 445, mRNA (cDNA clone IMAGE:4953934), partial cds Length = 2835 Score = 40.1 bits (20), Expect = 6.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 79 cttgtagtcttcttggcgtttctcttgt 106 |||| |||||||||| |||||||||||| Sbjct: 824 cttgaagtcttcttgacgtttctcttgt 797
>gb|BC034572.1| Mus musculus zinc finger protein 445, mRNA (cDNA clone IMAGE:4018895), partial cds Length = 2699 Score = 40.1 bits (20), Expect = 6.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 79 cttgtagtcttcttggcgtttctcttgt 106 |||| |||||||||| |||||||||||| Sbjct: 688 cttgaagtcttcttgacgtttctcttgt 661
>gb|BC055684.1| Mus musculus zinc finger protein 445, mRNA (cDNA clone IMAGE:6410700), complete cds Length = 2386 Score = 40.1 bits (20), Expect = 6.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 79 cttgtagtcttcttggcgtttctcttgt 106 |||| |||||||||| |||||||||||| Sbjct: 375 cttgaagtcttcttgacgtttctcttgt 348
>ref|NM_173364.4| Mus musculus zinc finger protein 445 (Zfp445), mRNA Length = 4033 Score = 40.1 bits (20), Expect = 6.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 79 cttgtagtcttcttggcgtttctcttgt 106 |||| |||||||||| |||||||||||| Sbjct: 2023 cttgaagtcttcttgacgtttctcttgt 1996
>gb|AC122396.4| Mus musculus BAC clone RP24-89O12 from chromosome 5, complete sequence Length = 205737 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 352 gaccttggctccaacaattt 371 |||||||||||||||||||| Sbjct: 6742 gaccttggctccaacaattt 6723
>gb|AC127345.4| Mus musculus BAC clone RP23-217K23 from chromosome 5, complete sequence Length = 210748 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 352 gaccttggctccaacaattt 371 |||||||||||||||||||| Sbjct: 112169 gaccttggctccaacaattt 112188
>gb|AC123842.4| Mus musculus BAC clone RP23-400N18 from chromosome 10, complete sequence Length = 200997 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 12 acagagcacttgccaaatca 31 |||||||||||||||||||| Sbjct: 83033 acagagcacttgccaaatca 83014
>gb|AC125374.4| Mus musculus BAC clone RP23-438P19 from chromosome 9, complete sequence Length = 175440 Score = 40.1 bits (20), Expect = 6.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 79 cttgtagtcttcttggcgtttctcttgt 106 |||| |||||||||| |||||||||||| Sbjct: 104086 cttgaagtcttcttgacgtttctcttgt 104059
>gb|BC099930.1| Mus musculus zinc finger protein 445, mRNA (cDNA clone MGC:107357 IMAGE:30058096), complete cds Length = 4033 Score = 40.1 bits (20), Expect = 6.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 79 cttgtagtcttcttggcgtttctcttgt 106 |||| |||||||||| |||||||||||| Sbjct: 2023 cttgaagtcttcttgacgtttctcttgt 1996
>gb|AY341877.1| Mus musculus zinc finger protein 445 mRNA, complete cds Length = 3788 Score = 40.1 bits (20), Expect = 6.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 79 cttgtagtcttcttggcgtttctcttgt 106 |||| |||||||||| |||||||||||| Sbjct: 1919 cttgaagtcttcttgacgtttctcttgt 1892
>emb|AL445649.15| Human DNA sequence from clone RP11-381O6 on chromosome 13, complete sequence Length = 190126 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 364 aacaatttacaaaacatctc 383 |||||||||||||||||||| Sbjct: 76052 aacaatttacaaaacatctc 76071
>gb|AC136297.6| Homo sapiens chromosome 11, clone CTD-2245O6, complete sequence Length = 185908 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 301 gggcccatcccagggacctc 320 |||||||||||||||||||| Sbjct: 74445 gggcccatcccagggacctc 74464
>emb|AL808125.11| Mouse DNA sequence from clone RP23-193L22 on chromosome 2, complete sequence Length = 236619 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 58 gccaaatgcttcatgctgct 77 |||||||||||||||||||| Sbjct: 139163 gccaaatgcttcatgctgct 139144
>gb|AE005723.1| Caulobacter crescentus CB15 section 49 of 359 of the complete genome Length = 10573 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 338 ggctcgaggatctcgacctt 357 |||||||||||||||||||| Sbjct: 3881 ggctcgaggatctcgacctt 3862
>dbj|AK036132.1| Mus musculus 16 days neonate cerebellum cDNA, RIKEN full-length enriched library, clone:9630038D24 product:MSZF50 (FRAGMENT) homolog [Mus musculus], full insert sequence Length = 2237 Score = 40.1 bits (20), Expect = 6.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 79 cttgtagtcttcttggcgtttctcttgt 106 |||| |||||||||| |||||||||||| Sbjct: 241 cttgaagtcttcttgacgtttctcttgt 214
>gb|AE004824.1| Pseudomonas aeruginosa PAO1, section 385 of 529 of the complete genome Length = 9910 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 310 ccagggacctcccttgccggcctt 333 ||||||||||||| |||||||||| Sbjct: 3283 ccagggacctcccctgccggcctt 3306
>gb|AC073606.19| Homo sapiens 12 BAC RP11-390N6 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 145430 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 368 atttacaaaacatctcaggg 387 |||||||||||||||||||| Sbjct: 63151 atttacaaaacatctcaggg 63170
>dbj|AP004270.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0406F06 Length = 144533 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 364 aacaatttacaaaacatctc 383 |||||||||||||||||||| Sbjct: 135577 aacaatttacaaaacatctc 135558
>dbj|AP005296.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1720_F04 Length = 105227 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 364 aacaatttacaaaacatctc 383 |||||||||||||||||||| Sbjct: 17998 aacaatttacaaaacatctc 17979 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,368,650 Number of Sequences: 3902068 Number of extensions: 3368650 Number of successful extensions: 57202 Number of sequences better than 10.0: 33 Number of HSP's better than 10.0 without gapping: 34 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 57097 Number of HSP's gapped (non-prelim): 105 length of query: 487 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 465 effective length of database: 17,147,199,772 effective search space: 7973447893980 effective search space used: 7973447893980 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)