ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart53b02 |
|---|---|
| Clone Library Name | barley_pub |
>FEN1A_ORYSA (Q9SXQ6) Flap endonuclease 1a (EC 3.1.-.-) (OsFEN-1a)| Length = 380 Score = 202 bits (514), Expect = 3e-52 Identities = 99/115 (86%), Positives = 112/115 (97%) Frame = +3 Query: 93 MGVKGLTKLLADNAPKSMREQKFESYFGRRIAVDASMSIYQFLIVVGRTGMETLTNEAGD 272 MG+KGLTKLLADNAPK+M+EQKFESYFGRRIAVDASMSIYQFLIVVGRTGMETLTNEAG+ Sbjct: 1 MGIKGLTKLLADNAPKAMKEQKFESYFGRRIAVDASMSIYQFLIVVGRTGMETLTNEAGE 60 Query: 273 VTSHLQGMFSRTIRLLEAGIKPVYVFDGKPPEMKKDELLKRHAKRK*STEELTKA 437 VTSHLQGMF+RTIRLLEAGIKPVYVFDGKPP++KK EL KR++KR+ +T+ELT+A Sbjct: 61 VTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPDLKKQELAKRYSKREDATKELTEA 115
>FEN1B_ORYSA (Q75LI2) Flap endonuclease 1b (EC 3.1.-.-) (OsFEN-1b)| Length = 412 Score = 156 bits (395), Expect = 2e-38 Identities = 76/115 (66%), Positives = 95/115 (82%) Frame = +3 Query: 93 MGVKGLTKLLADNAPKSMREQKFESYFGRRIAVDASMSIYQFLIVVGRTGMETLTNEAGD 272 MG+KGLTKLLA++AP + ++ E Y GR +A+D S+SIYQFLIVVGR G E LTNEAG+ Sbjct: 1 MGIKGLTKLLAEHAPGAAVRRRVEDYRGRVVAIDTSLSIYQFLIVVGRKGTEVLTNEAGE 60 Query: 273 VTSHLQGMFSRTIRLLEAGIKPVYVFDGKPPEMKKDELLKRHAKRK*STEELTKA 437 VTSHLQGM +RT+R+LEAGIKPV+VFDG+PP+MKK EL KR KR S+E+L +A Sbjct: 61 VTSHLQGMLNRTVRILEAGIKPVFVFDGEPPDMKKKELAKRSLKRDGSSEDLNRA 115
>FEN1_HUMAN (P39748) Flap endonuclease 1 (EC 3.1.-.-) (Maturation factor 1)| (MF1) Length = 380 Score = 140 bits (354), Expect = 1e-33 Identities = 69/115 (60%), Positives = 89/115 (77%) Frame = +3 Query: 93 MGVKGLTKLLADNAPKSMREQKFESYFGRRIAVDASMSIYQFLIVVGRTGMETLTNEAGD 272 MG++GL KL+AD AP ++RE +SYFGR++A+DASMSIYQFLI V R G + L NE G+ Sbjct: 1 MGIQGLAKLIADVAPSAIRENDIKSYFGRKVAIDASMSIYQFLIAV-RQGGDVLQNEEGE 59 Query: 273 VTSHLQGMFSRTIRLLEAGIKPVYVFDGKPPEMKKDELLKRHAKRK*STEELTKA 437 TSHL GMF RTIR++E GIKPVYVFDGKPP++K EL KR +R + ++L +A Sbjct: 60 TTSHLMGMFYRTIRMMENGIKPVYVFDGKPPQLKSGELAKRSERRAEAEKQLQQA 114
>RAD27_YEAST (P26793) Structure-specific endonuclease RAD27| Length = 382 Score = 131 bits (329), Expect = 8e-31 Identities = 59/115 (51%), Positives = 88/115 (76%) Frame = +3 Query: 93 MGVKGLTKLLADNAPKSMREQKFESYFGRRIAVDASMSIYQFLIVVGRTGMETLTNEAGD 272 MG+KGL +++++ P ++R+ +S+FGR++A+DASMS+YQFLI V + LTNEAG+ Sbjct: 1 MGIKGLNAIISEHVPSAIRKSDIKSFFGRKVAIDASMSLYQFLIAVRQQDGGQLTNEAGE 60 Query: 273 VTSHLQGMFSRTIRLLEAGIKPVYVFDGKPPEMKKDELLKRHAKRK*STEELTKA 437 TSHL GMF RT+R+++ GIKP YVFDGKPP++K EL KR ++R + ++L +A Sbjct: 61 TTSHLMGMFYRTLRMIDNGIKPCYVFDGKPPDLKSHELTKRSSRRVETEKKLAEA 115
>FEN1_MOUSE (P39749) Flap endonuclease 1 (EC 3.1.-.-)| Length = 378 Score = 127 bits (318), Expect = 2e-29 Identities = 68/115 (59%), Positives = 86/115 (74%) Frame = +3 Query: 93 MGVKGLTKLLADNAPKSMREQKFESYFGRRIAVDASMSIYQFLIVVGRTGMETLTNEAGD 272 MG+ GL KL+AD AP ++RE +SYFGR++A+DASMSIYQFLI V R G + L NE G+ Sbjct: 1 MGIHGLAKLIADVAPSAIRENDIKSYFGRKVAIDASMSIYQFLIAV-RQGGDVLQNEEGE 59 Query: 273 VTSHLQGMFSRTIRLLEAGIKPVYVFDGKPPEMKKDELLKRHAKRK*STEELTKA 437 TS L GMF RTIR +E GIKPVYVFDGKPP++K EL KR +R + ++L +A Sbjct: 60 TTS-LMGMFYRTIR-MENGIKPVYVFDGKPPQLKSGELAKRSERRAEAEKQLQQA 112
>RAD2_SCHPO (P39750) DNA-repair protein rad2| Length = 380 Score = 124 bits (311), Expect = 1e-28 Identities = 57/111 (51%), Positives = 83/111 (74%) Frame = +3 Query: 93 MGVKGLTKLLADNAPKSMREQKFESYFGRRIAVDASMSIYQFLIVVGRTGMETLTNEAGD 272 MG+KGL ++L+++AP S++ ++YFGR++A+DASMS+YQFLI V + L NE G+ Sbjct: 1 MGIKGLAQVLSEHAPASVKHNDIKNYFGRKVAIDASMSLYQFLIQVRSQDGQQLMNEQGE 60 Query: 273 VTSHLQGMFSRTIRLLEAGIKPVYVFDGKPPEMKKDELLKRHAKRK*STEE 425 TSHL GMF RT+R+++ GIKP +VFDGKPP +K EL KR A+ + + E+ Sbjct: 61 TTSHLMGMFYRTLRIVDNGIKPCFVFDGKPPTLKSGELAKRVARHQKARED 111
>FEN_PYRAE (Q8ZYN2) Flap structure-specific endonuclease (EC 3.1.-.-)| Length = 346 Score = 99.8 bits (247), Expect = 3e-21 Identities = 56/115 (48%), Positives = 73/115 (63%) Frame = +3 Query: 93 MGVKGLTKLLADNAPKSMREQKFESYFGRRIAVDASMSIYQFLIVVGRTGMETLTNEAGD 272 MGV L KL+ RE K ES G+ IA+DA ++YQFL + + L + AG Sbjct: 1 MGVTELGKLIGKEV---RREVKLESLSGKCIALDAYNALYQFLASIRQPDGTPLMDRAGR 57 Query: 273 VTSHLQGMFSRTIRLLEAGIKPVYVFDGKPPEMKKDELLKRHAKRK*STEELTKA 437 +TSHL G+F RTI LLEAGI+PVYVFDGKPPE K E+ +R R+ + EE+ +A Sbjct: 58 ITSHLSGLFYRTINLLEAGIRPVYVFDGKPPEFKLAEIEERRKTREKAMEEVLRA 112
>FEN_PYRFU (O93634) Flap structure-specific endonuclease (EC 3.1.-.-)| Length = 340 Score = 97.1 bits (240), Expect = 2e-20 Identities = 48/97 (49%), Positives = 67/97 (69%) Frame = +3 Query: 147 REQKFESYFGRRIAVDASMSIYQFLIVVGRTGMETLTNEAGDVTSHLQGMFSRTIRLLEA 326 +E + E+ +G++IA+DA +IYQFL + + L + G +TSHL G+F RTI L+EA Sbjct: 12 KEIELENLYGKKIAIDALNAIYQFLSTIRQKDGTPLMDSKGRITSHLSGLFYRTINLMEA 71 Query: 327 GIKPVYVFDGKPPEMKKDELLKRHAKRK*STEELTKA 437 GIKPVYVFDG+PPE KK EL KR R+ + E+ +A Sbjct: 72 GIKPVYVFDGEPPEFKKKELEKRREAREEAEEKWREA 108
>FEN_PYRAB (Q9V0P9) Flap structure-specific endonuclease (EC 3.1.-.-)| Length = 343 Score = 94.7 bits (234), Expect = 9e-20 Identities = 46/88 (52%), Positives = 61/88 (69%) Frame = +3 Query: 147 REQKFESYFGRRIAVDASMSIYQFLIVVGRTGMETLTNEAGDVTSHLQGMFSRTIRLLEA 326 +E + E+ +G++IA+DA +IYQFL + + L + G +TSHL G+F RTI L+EA Sbjct: 12 KEIELENLYGKKIAIDALNAIYQFLSTIRQRDGTPLMDSKGRITSHLSGLFYRTINLMEA 71 Query: 327 GIKPVYVFDGKPPEMKKDELLKRHAKRK 410 GIKPVYVFDGKPP KK EL KR R+ Sbjct: 72 GIKPVYVFDGKPPAFKKKELEKRREARE 99
>FEN_PYRKO (Q5JGN0) Flap structure-specific endonuclease (EC 3.1.-.-)| Length = 340 Score = 94.0 bits (232), Expect = 1e-19 Identities = 46/97 (47%), Positives = 65/97 (67%) Frame = +3 Query: 147 REQKFESYFGRRIAVDASMSIYQFLIVVGRTGMETLTNEAGDVTSHLQGMFSRTIRLLEA 326 +E + ES +G+++A+DA ++YQFL + + L + G +TSHL G F RTI L+EA Sbjct: 12 KEIELESLYGKKVAIDAFNAMYQFLSTIRQRDGTPLMDSQGRITSHLSGFFYRTINLMEA 71 Query: 327 GIKPVYVFDGKPPEMKKDELLKRHAKRK*STEELTKA 437 GIKP YVFDGKPP+ KK EL KR R+ + E+ +A Sbjct: 72 GIKPAYVFDGKPPDFKKRELEKRREAREEAEEKWYEA 108
>FEN_PYRHO (O50123) Flap structure-specific endonuclease (EC 3.1.-.-)| Length = 343 Score = 94.0 bits (232), Expect = 1e-19 Identities = 47/97 (48%), Positives = 64/97 (65%) Frame = +3 Query: 120 LADNAPKSMREQKFESYFGRRIAVDASMSIYQFLIVVGRTGMETLTNEAGDVTSHLQGMF 299 + D P+ +E E+ +G++IA+DA +IYQFL + + L + G +TSHL G+F Sbjct: 5 IGDLVPR--KEIDLENLYGKKIAIDALNAIYQFLSTIRQRDGTPLMDSKGRITSHLSGLF 62 Query: 300 SRTIRLLEAGIKPVYVFDGKPPEMKKDELLKRHAKRK 410 RTI L+EAGIKP YVFDGKPPE K+ EL KR R+ Sbjct: 63 YRTINLMEAGIKPAYVFDGKPPEFKRKELEKRREARE 99
>FEN_SULSO (Q980U8) Flap structure-specific endonuclease (EC 3.1.-.-)| Length = 349 Score = 89.7 bits (221), Expect = 3e-18 Identities = 44/106 (41%), Positives = 64/106 (60%) Frame = +3 Query: 120 LADNAPKSMREQKFESYFGRRIAVDASMSIYQFLIVVGRTGMETLTNEAGDVTSHLQGMF 299 LAD RE F G+R+++D ++YQFL + + L + G VTSHL G+F Sbjct: 3 LADLVKDVKRELSFSELKGKRVSIDGYNALYQFLAAIRQPDGTPLMDSQGRVTSHLSGLF 62 Query: 300 SRTIRLLEAGIKPVYVFDGKPPEMKKDELLKRHAKRK*STEELTKA 437 RTI +LE G+ P+YVFDGKPPE K +EL +R ++ + +L +A Sbjct: 63 YRTINILEEGVIPIYVFDGKPPEQKSEELERRRKAKEEAERKLERA 108
>FEN_SULTO (Q976H6) Flap structure-specific endonuclease (EC 3.1.-.-)| Length = 351 Score = 86.3 bits (212), Expect = 3e-17 Identities = 44/106 (41%), Positives = 66/106 (62%) Frame = +3 Query: 120 LADNAPKSMREQKFESYFGRRIAVDASMSIYQFLIVVGRTGMETLTNEAGDVTSHLQGMF 299 LA+ + +E F G++I++DA ++YQFL + + L + G VTSHL G+F Sbjct: 3 LAELVEEIKKELSFAELKGKKISIDAYNALYQFLAAIRQPDGTPLMDSQGRVTSHLNGLF 62 Query: 300 SRTIRLLEAGIKPVYVFDGKPPEMKKDELLKRHAKRK*STEELTKA 437 RTI +LE GI P+YVFDGKPPE K EL +R ++ + ++L +A Sbjct: 63 YRTISILEEGIIPIYVFDGKPPEQKAQELERRKKVKEEAEKKLEQA 108
>FEN_METKA (Q8TXU4) Flap structure-specific endonuclease (EC 3.1.-.-)| Length = 348 Score = 85.9 bits (211), Expect = 4e-17 Identities = 41/96 (42%), Positives = 64/96 (66%) Frame = +3 Query: 150 EQKFESYFGRRIAVDASMSIYQFLIVVGRTGMETLTNEAGDVTSHLQGMFSRTIRLLEAG 329 E + GR IA+DA ++YQFL + + G L + G +TSHL G+ RT+ L+E G Sbjct: 14 ETDLRALAGREIAIDAFNALYQFLTTIMKDG-RPLMDSRGRITSHLNGLLYRTVNLVEEG 72 Query: 330 IKPVYVFDGKPPEMKKDELLKRHAKRK*STEELTKA 437 IKPVYVFDG+PP++K++ L +R +++ + E+L +A Sbjct: 73 IKPVYVFDGEPPDLKRETLERRRERKEEAMEKLRRA 108
>FEN_AERPE (Q9YFY5) Flap structure-specific endonuclease (EC 3.1.-.-)| Length = 351 Score = 85.1 bits (209), Expect = 7e-17 Identities = 43/87 (49%), Positives = 57/87 (65%) Frame = +3 Query: 135 PKSMREQKFESYFGRRIAVDASMSIYQFLIVVGRTGMETLTNEAGDVTSHLQGMFSRTIR 314 P++ RE + + G +A+DA +YQFL + + L + G VTSHL G+F RTI Sbjct: 12 PEARREVELRALSGYVLALDAYNMLYQFLTAIRQPDGTPLLDREGRVTSHLSGLFYRTIN 71 Query: 315 LLEAGIKPVYVFDGKPPEMKKDELLKR 395 L+E GIKPVYVFDGKPPEMK E+ +R Sbjct: 72 LVEEGIKPVYVFDGKPPEMKSREVEER 98
>FEN_SULAC (Q4JAN1) Flap structure-specific endonuclease (EC 3.1.-.-)| Length = 349 Score = 84.3 bits (207), Expect = 1e-16 Identities = 40/97 (41%), Positives = 63/97 (64%) Frame = +3 Query: 147 REQKFESYFGRRIAVDASMSIYQFLIVVGRTGMETLTNEAGDVTSHLQGMFSRTIRLLEA 326 RE G++I++DA +IYQFL + + L + G +TSHL G+F RTI ++E+ Sbjct: 12 REINLNEMKGKKISIDAYNTIYQFLAAIRQPDGTPLIDSKGRITSHLNGLFYRTISIIES 71 Query: 327 GIKPVYVFDGKPPEMKKDELLKRHAKRK*STEELTKA 437 GI P++VFDGKPPE K +E+ +R ++ + ++L KA Sbjct: 72 GIIPIFVFDGKPPEKKSEEIERRKRAKEEAEKKLEKA 108
>FEN_NANEQ (P61942) Flap structure-specific endonuclease (EC 3.1.-.-)| Length = 339 Score = 82.8 bits (203), Expect = 3e-16 Identities = 45/94 (47%), Positives = 61/94 (64%) Frame = +3 Query: 147 REQKFESYFGRRIAVDASMSIYQFLIVVGRTGMETLTNEAGDVTSHLQGMFSRTIRLLEA 326 +E +F+ FG+ IA+DA ++YQFL + + G E L + G +TSHL G+F RTI LLE Sbjct: 14 KEIEFKQLFGKVIAIDAFNALYQFLFSIRQDG-EPLRDSKGRITSHLSGLFYRTINLLEY 72 Query: 327 GIKPVYVFDGKPPEMKKDELLKRHAKRK*STEEL 428 GIKP+YVFDG PP+ K + KRK E+L Sbjct: 73 GIKPIYVFDGTPPKFK----IVAWEKRKKHKEQL 102
>FEN_METMA (Q8PYF6) Flap structure-specific endonuclease (EC 3.1.-.-)| Length = 338 Score = 82.0 bits (201), Expect = 6e-16 Identities = 44/97 (45%), Positives = 59/97 (60%) Frame = +3 Query: 147 REQKFESYFGRRIAVDASMSIYQFLIVVGRTGMETLTNEAGDVTSHLQGMFSRTIRLLEA 326 R+ + R +AVDA +++QFL ++ + L N G VTSHL G+ RT L+EA Sbjct: 12 RKIELSDLSNRVVAVDAFNTLHQFLSIIRQRDGSPLVNSQGKVTSHLSGLLYRTASLVEA 71 Query: 327 GIKPVYVFDGKPPEMKKDELLKRHAKRK*STEELTKA 437 GIKPV+VFDGKPPEMK L +R R+ S E+ A Sbjct: 72 GIKPVFVFDGKPPEMKTGTLNRRKEIRESSKEKWENA 108
>FEN_METAC (Q8TIY5) Flap structure-specific endonuclease (EC 3.1.-.-)| Length = 338 Score = 81.6 bits (200), Expect = 8e-16 Identities = 41/97 (42%), Positives = 60/97 (61%) Frame = +3 Query: 147 REQKFESYFGRRIAVDASMSIYQFLIVVGRTGMETLTNEAGDVTSHLQGMFSRTIRLLEA 326 R+ + R +AVDA +++QFL ++ + L N G VTSHL G+ RT L+EA Sbjct: 12 RKIELSDLSNRVVAVDAFNTLHQFLSIIRQRDGSPLVNSRGKVTSHLSGLLYRTASLVEA 71 Query: 327 GIKPVYVFDGKPPEMKKDELLKRHAKRK*STEELTKA 437 GIKPV++FDGKPP++K + L +R R+ S E+ A Sbjct: 72 GIKPVFIFDGKPPDLKSETLSRRKEVRETSLEKWENA 108
>FEN_ARCFU (O29975) Flap structure-specific endonuclease (EC 3.1.-.-)| Length = 336 Score = 79.7 bits (195), Expect = 3e-15 Identities = 39/93 (41%), Positives = 61/93 (65%) Frame = +3 Query: 150 EQKFESYFGRRIAVDASMSIYQFLIVVGRTGMETLTNEAGDVTSHLQGMFSRTIRLLEAG 329 E + E + G++IAVDA ++YQF+ ++ + L + G +TSHL G+ R ++E G Sbjct: 13 EVELEYFSGKKIAVDAFNTLYQFISIIRQPDGTPLKDSQGRITSHLSGILYRVSNMVEVG 72 Query: 330 IKPVYVFDGKPPEMKKDELLKRHAKRK*STEEL 428 I+PV+VFDG+PPE KK E+ +R KR+ EE+ Sbjct: 73 IRPVFVFDGEPPEFKKAEIEER-KKRRAEAEEM 104
>FEN_PICTO (Q6L2I9) Flap structure-specific endonuclease (EC 3.1.-.-)| Length = 338 Score = 70.9 bits (172), Expect = 1e-12 Identities = 40/96 (41%), Positives = 56/96 (58%) Frame = +3 Query: 150 EQKFESYFGRRIAVDASMSIYQFLIVVGRTGMETLTNEAGDVTSHLQGMFSRTIRLLEAG 329 E + G ++VDA IYQFL + E L + G++TSHL G+F RT LLE Sbjct: 13 ETSLKDNSGSIVSVDAYNIIYQFLSSIRGDDGEPLKDSNGNITSHLSGIFYRTSNLLENN 72 Query: 330 IKPVYVFDGKPPEMKKDELLKRHAKRK*STEELTKA 437 IKPVYVFDGKP +K + L +R ++ + +L +A Sbjct: 73 IKPVYVFDGKPFHLKSETLRERSLIKEKNIMKLEEA 108
>FEN_METJA (Q58839) Flap structure-specific endonuclease (EC 3.1.-.-)| Length = 326 Score = 69.7 bits (169), Expect = 3e-12 Identities = 34/85 (40%), Positives = 52/85 (61%), Gaps = 1/85 (1%) Frame = +3 Query: 159 FESYFGRRIAVDASMSIYQFLIVVGRTGMETLTNEAGDVTSHLQGMFSRTIRLLEAGIKP 338 FE G+++A+D ++YQFL + L N G++TS G+F +TI LLE I P Sbjct: 16 FEDLKGKKVAIDGMNALYQFLTSIRLRDGSPLRNRKGEITSAYNGVFYKTIHLLENDITP 75 Query: 339 VYVFDGKPPEMK-KDELLKRHAKRK 410 ++VFDG+PP++K K ++R K K Sbjct: 76 IWVFDGEPPKLKEKTRKVRREMKEK 100
>RAD13_SCHPO (P28706) DNA-repair protein rad13| Length = 1112 Score = 68.2 bits (165), Expect = 9e-12 Identities = 45/113 (39%), Positives = 59/113 (52%) Frame = +3 Query: 93 MGVKGLTKLLADNAPKSMREQKFESYFGRRIAVDASMSIYQFLIVVGRTGMETLTNEAGD 272 MGV GL +L R K E+ +R+A+DAS+ IYQFL V L + Sbjct: 1 MGVSGLWDILEP----VKRPVKLETLVNKRLAIDASIWIYQFLKAVRDKEGNQLKS---- 52 Query: 273 VTSHLQGMFSRTIRLLEAGIKPVYVFDGKPPEMKKDELLKRHAKRK*STEELT 431 SH+ G F R +LL GIKPV+VFDG P +K+ + KR A+R E T Sbjct: 53 --SHVVGFFRRICKLLFFGIKPVFVFDGGAPSLKRQTIQKRQARRLDREENAT 103
>FEN_THEVO (Q97B98) Flap structure-specific endonuclease (EC 3.1.-.-)| Length = 335 Score = 65.9 bits (159), Expect = 4e-11 Identities = 35/84 (41%), Positives = 51/84 (60%) Frame = +3 Query: 186 AVDASMSIYQFLIVVGRTGMETLTNEAGDVTSHLQGMFSRTIRLLEAGIKPVYVFDGKPP 365 A+D +YQ L V + L + +G+VTSHL G+F RT+ L+E GIKP++VFDGKP Sbjct: 25 AIDTYNILYQLLSNVRQYDGTPLMDSSGNVTSHLYGIFYRTVNLVENGIKPIFVFDGKPS 84 Query: 366 EMKKDELLKRHAKRK*STEELTKA 437 +K L R ++ + EL +A Sbjct: 85 PLKNRTLEIRQLAKEKAKAELEEA 108
>FEN_METTH (O27670) Flap structure-specific endonuclease (EC 3.1.-.-)| Length = 328 Score = 65.5 bits (158), Expect = 6e-11 Identities = 37/99 (37%), Positives = 56/99 (56%) Frame = +3 Query: 141 SMREQKFESYFGRRIAVDASMSIYQFLIVVGRTGMETLTNEAGDVTSHLQGMFSRTIRLL 320 S R + E GR +AVDA+ ++YQFL + + L + G VTSHL G+ RT ++ Sbjct: 10 SPRRIRLEDLRGRTVAVDAANTLYQFLSSIRQRDGTPLMDSRGRVTSHLSGILYRTAAVM 69 Query: 321 EAGIKPVYVFDGKPPEMKKDELLKRHAKRK*STEELTKA 437 E I+ +YVFDG+ +K + + +R RK S E +A Sbjct: 70 EREIRVIYVFDGRSHHLKGETVSRRADIRKKSEVEWKRA 108
>FEN_THEAC (Q9HJD4) Flap structure-specific endonuclease (EC 3.1.-.-)| Length = 336 Score = 63.9 bits (154), Expect = 2e-10 Identities = 36/96 (37%), Positives = 53/96 (55%) Frame = +3 Query: 150 EQKFESYFGRRIAVDASMSIYQFLIVVGRTGMETLTNEAGDVTSHLQGMFSRTIRLLEAG 329 E + + ++D +YQ L V + L + G+VTSHL G+F RTI LLE Sbjct: 13 ETSLKDQGNQTFSIDTYNILYQLLSNVRQYDGMPLMDSHGNVTSHLYGIFYRTINLLENR 72 Query: 330 IKPVYVFDGKPPEMKKDELLKRHAKRK*STEELTKA 437 I+PVYVFDGKP +K + +R ++ + EL +A Sbjct: 73 IRPVYVFDGKPSPLKNRTISERQMMKEKAKAELEEA 108
>RAD2_YEAST (P07276) DNA-repair protein RAD2| Length = 1031 Score = 62.4 bits (150), Expect = 5e-10 Identities = 37/95 (38%), Positives = 54/95 (56%) Frame = +3 Query: 126 DNAPKSMREQKFESYFGRRIAVDASMSIYQFLIVVGRTGMETLTNEAGDVTSHLQGMFSR 305 D A + R + ES +R+AVDAS+ IYQFL V + N SH+ G F R Sbjct: 8 DIAGPTARPVRLESLEDKRMAVDASIWIYQFLKAVRDQEGNAVKN------SHITGFFRR 61 Query: 306 TIRLLEAGIKPVYVFDGKPPEMKKDELLKRHAKRK 410 +LL GI+PV+VFDG P +K++ + +R +R+ Sbjct: 62 ICKLLYFGIRPVFVFDGGVPVLKRETIRQRKERRQ 96
>UVH3_ARATH (Q9ATY5) DNA-repair protein UVH3 (EC 3.1.-.-) (UV hypersensitive| protein 3) (XPG homolog) (ERCC5 homolog) (RAD2 homolog) (AtUVH3) (AtXPG) (AtRAD2) Length = 1479 Score = 60.1 bits (144), Expect = 2e-09 Identities = 38/116 (32%), Positives = 64/116 (55%), Gaps = 2/116 (1%) Frame = +3 Query: 93 MGVKGLTKLLADNAPKSMREQKFESYFGRRIAVDASMSIYQFLIVVGRTGMETLTNEAGD 272 MGV+GL +LLA R E+ +R+A+DAS+ + QF+ + + +E GD Sbjct: 1 MGVQGLWELLAPVG----RRVSVETLANKRLAIDASIWMVQFI--------KAMRDEKGD 48 Query: 273 VT--SHLQGMFSRTIRLLEAGIKPVYVFDGKPPEMKKDELLKRHAKRK*STEELTK 434 + +HL G F R +LL KP++VFDG P +K+ ++ R +R+ + ++ K Sbjct: 49 MVQNAHLIGFFRRICKLLFLRTKPIFVFDGATPALKRRTVIARRRQRENAQTKIRK 104
>ERCC5_HUMAN (P28715) DNA-repair protein complementing XP-G cells (Xeroderma| pigmentosum group G-complementing protein) (DNA excision repair protein ERCC-5) Length = 1186 Score = 52.0 bits (123), Expect = 6e-07 Identities = 38/114 (33%), Positives = 60/114 (52%) Frame = +3 Query: 93 MGVKGLTKLLADNAPKSMREQKFESYFGRRIAVDASMSIYQFLIVVGRTGMETLTNEAGD 272 MGV+GL KLL + R+ E+ G+ +AVD S+ + Q L V ++ N Sbjct: 1 MGVQGLWKLLECSG----RQVSPEALEGKILAVDISIWLNQALKGVRDRHGNSIENP--- 53 Query: 273 VTSHLQGMFSRTIRLLEAGIKPVYVFDGKPPEMKKDELLKRHAKRK*STEELTK 434 HL +F R +LL I+P++VFDG P +KK L+KR ++ ++ + K Sbjct: 54 ---HLLTLFHRLCKLLFFRIRPIFVFDGDAPLLKKQTLVKRRQRKDLASSDSRK 104
>FEN_HALSA (Q9HQ27) Flap structure-specific endonuclease (EC 3.1.-.-)| Length = 327 Score = 51.6 bits (122), Expect = 8e-07 Identities = 32/100 (32%), Positives = 50/100 (50%), Gaps = 1/100 (1%) Frame = +3 Query: 141 SMREQKFESYFGRRIAVDASMSIYQFLIV-VGRTGMETLTNEAGDVTSHLQGMFSRTIRL 317 ++ E F G +AVDA +Y++L V TG + T G ++L G + Sbjct: 11 AIEETPFADLEGSVVAVDAHNWLYKYLTTTVQWTGADVYTTSDGTEVANLVGAVQGLPKF 70 Query: 318 LEAGIKPVYVFDGKPPEMKKDELLKRHAKRK*STEELTKA 437 E G+ PV+V+DG E+K DE+ R +R+ E+L A Sbjct: 71 FEHGLTPVFVWDGGVTELKDDEIADRREQRERYEEQLDDA 110
>ERCC5_MOUSE (P35689) DNA-repair protein complementing XP-G cells homolog| (Xeroderma pigmentosum group G-complementing protein homolog) (DNA excision repair protein ERCC-5) Length = 1170 Score = 49.7 bits (117), Expect = 3e-06 Identities = 36/105 (34%), Positives = 55/105 (52%) Frame = +3 Query: 93 MGVKGLTKLLADNAPKSMREQKFESYFGRRIAVDASMSIYQFLIVVGRTGMETLTNEAGD 272 MGV+GL KLL + + E + G+ +AVD S+ + Q L V + + N Sbjct: 1 MGVQGLWKLLECSGHRVSPE----ALEGKVLAVDISIWLNQALKGVRDSHGNVIEN---- 52 Query: 273 VTSHLQGMFSRTIRLLEAGIKPVYVFDGKPPEMKKDELLKRHAKR 407 +HL +F R +LL I+P++VFDG P +KK L KR ++ Sbjct: 53 --AHLLTLFHRLCKLLFFRIRPIFVFDGDAPLLKKQTLAKRRQRK 95
>ERCC5_XENLA (P14629) DNA-repair protein complementing XP-G cells homolog| (Xeroderma pigmentosum group G-complementing protein homolog) Length = 1196 Score = 43.9 bits (102), Expect = 2e-04 Identities = 34/114 (29%), Positives = 58/114 (50%) Frame = +3 Query: 93 MGVKGLTKLLADNAPKSMREQKFESYFGRRIAVDASMSIYQFLIVVGRTGMETLTNEAGD 272 MGV+GL KLL + + + + E G+ +AVD S+ + Q + + N Sbjct: 1 MGVQGLWKLL-ECSGRPINPGTLE---GKILAVDISIWLNQAVKGARDRQGNAIQN---- 52 Query: 273 VTSHLQGMFSRTIRLLEAGIKPVYVFDGKPPEMKKDELLKRHAKRK*STEELTK 434 +HL +F R +LL I+P++VFDG+ P +K+ L KR + ++ + K Sbjct: 53 --AHLLTLFHRLCKLLFFRIRPIFVFDGEAPLLKRQTLAKRRQRTDKASNDARK 104
>EXO1_SCHPO (P53695) Exodeoxyribonuclease 1 (EC 3.1.-.-) (Exodeoxyribonuclease| I) (Exonuclease I) (EXO I) Length = 571 Score = 36.6 bits (83), Expect = 0.028 Identities = 28/106 (26%), Positives = 47/106 (44%) Frame = +3 Query: 93 MGVKGLTKLLADNAPKSMREQKFESYFGRRIAVDASMSIYQFLIVVGRTGMETLTNEAGD 272 MG+KGL LL + E + G+ + VD + +++ + E N+ D Sbjct: 1 MGIKGLLGLLKP----MQKSSHVEEFSGKTLGVDGYVWLHKAVFTCAH---ELAFNKETD 53 Query: 273 VTSHLQGMFSRTIRLLEAGIKPVYVFDGKPPEMKKDELLKRHAKRK 410 +L+ + + L G+KP+ VFDG P K KR +R+ Sbjct: 54 --KYLKYAIHQALMLQYYGVKPLIVFDGGPLPCKASTEQKRKERRQ 97
>EXO1_XENLA (Q9W6K2) Exonuclease 1 (EC 3.1.-.-) (Exonuclease I)| Length = 734 Score = 34.7 bits (78), Expect = 0.11 Identities = 28/106 (26%), Positives = 48/106 (45%) Frame = +3 Query: 93 MGVKGLTKLLADNAPKSMREQKFESYFGRRIAVDASMSIYQFLIVVGRTGMETLTNEAGD 272 MG++GL + L + A + + +K++ G+ +AVD +++ G + Sbjct: 1 MGIQGLLQFLKE-ASEPVHVKKYK---GKTVAVDTYCWLHK-----GAFACAEKLAKGEP 51 Query: 273 VTSHLQGMFSRTIRLLEAGIKPVYVFDGKPPEMKKDELLKRHAKRK 410 ++Q LL G+KP+ VFDG KKD R KR+ Sbjct: 52 TDQYVQFCMKLVHMLLSFGVKPILVFDGCTLPSKKDVEKARREKRQ 97
>ARGB_BIFLO (P59295) Acetylglutamate kinase (EC 2.7.2.8) (NAG kinase) (AGK)| (N-acetyl-L-glutamate 5-phosphotransferase) Length = 305 Score = 34.3 bits (77), Expect = 0.14 Identities = 14/54 (25%), Positives = 29/54 (53%) Frame = +3 Query: 225 VVGRTGMETLTNEAGDVTSHLQGMFSRTIRLLEAGIKPVYVFDGKPPEMKKDEL 386 ++GR G+E L + D+ S ++ +R ++ G+ +V DG+ P +E+ Sbjct: 228 LIGRIGVENLRDMLPDLESGMRPKMEACVRAIDGGVPQAHVIDGRKPHSILNEI 281
>EXO1_HUMAN (Q9UQ84) Exonuclease 1 (EC 3.1.-.-) (hExo1) (Exonuclease I) (hExoI)| Length = 846 Score = 33.5 bits (75), Expect = 0.24 Identities = 30/107 (28%), Positives = 52/107 (48%), Gaps = 1/107 (0%) Frame = +3 Query: 93 MGVKGLTKLLADNAPKSMREQKFESYFGRRIAVDASMSIYQFLIVVGRTGMETLTNEAGD 272 MG++GL + + + A + + +K++ G+ +AVD +++ I E L G+ Sbjct: 1 MGIQGLLQFIKE-ASEPIHVRKYK---GQVVAVDTYCWLHKGAIACA----EKLAK--GE 50 Query: 273 VTSHLQGMFSRTIR-LLEAGIKPVYVFDGKPPEMKKDELLKRHAKRK 410 T G + + LL GIKP+ VFDG KK+ R +R+ Sbjct: 51 PTDRYVGFCMKFVNMLLSHGIKPILVFDGCTLPSKKEVERSRRERRQ 97
>EXO1_MOUSE (Q9QZ11) Exonuclease 1 (EC 3.1.-.-) (mExo1) (Exonuclease I)| Length = 837 Score = 33.5 bits (75), Expect = 0.24 Identities = 27/107 (25%), Positives = 48/107 (44%), Gaps = 1/107 (0%) Frame = +3 Query: 93 MGVKGLTKLLADNAPKSMREQKFESYFGRRIAVDASMSIYQFLIVVGRTGMETLTNEAGD 272 MG++GL + + + + + Y G+ +AVD +++ I E L G+ Sbjct: 1 MGIQGLLQFIQE----ASEPVNVKKYKGQAVAVDTYCWLHKGAIACA----EKLAK--GE 50 Query: 273 VTSHLQGMFSRTIR-LLEAGIKPVYVFDGKPPEMKKDELLKRHAKRK 410 T G + + LL G+KP+ +FDG KK+ R +R+ Sbjct: 51 PTDRYVGFCMKFVNMLLSYGVKPILIFDGCTLPSKKEVERSRRERRQ 97
>EXO1_BRARE (Q803U7) Exonuclease 1 (EC 3.1.-.-) (Exonuclease I)| Length = 806 Score = 32.7 bits (73), Expect = 0.40 Identities = 31/107 (28%), Positives = 51/107 (47%), Gaps = 1/107 (0%) Frame = +3 Query: 93 MGVKGLTKLLADNAPKSMREQKFESYFGRRIAVDASMSIYQFLIVVGRTGMETLTNEAGD 272 MG++GL + + D A + M +K Y G+ +AVD Y +L + E L G+ Sbjct: 1 MGIQGLLQFIKD-ASEPMHVKK---YRGQTVAVDT----YCWLHKGAFSCAEKLAK--GE 50 Query: 273 VTSHLQGMFSRTI-RLLEAGIKPVYVFDGKPPEMKKDELLKRHAKRK 410 T + + LL G+KP+ VFDG+ K++ R +R+ Sbjct: 51 PTDQYVSYCMKFVDMLLSFGVKPILVFDGRNLPSKQEVEKSRRERRQ 97
>Y243_ARCFU (O29996) Hypothetical protein AF0243| Length = 529 Score = 30.0 bits (66), Expect = 2.6 Identities = 14/40 (35%), Positives = 21/40 (52%) Frame = +3 Query: 285 LQGMFSRTIRLLEAGIKPVYVFDGKPPEMKKDELLKRHAK 404 L+ + R + L I+ V +F G P E + D LK+H K Sbjct: 357 LEEVMERNLLLRRINIRQVKIFPGTPMEKEGDRRLKKHRK 396
>YII1_SCHPO (Q9UTN2) Hypothetical protein C139.01c in chromosome I| Length = 802 Score = 30.0 bits (66), Expect = 2.6 Identities = 25/107 (23%), Positives = 45/107 (42%), Gaps = 1/107 (0%) Frame = +3 Query: 93 MGVKGLTKLLADNAPKSMREQKFESYFGRRIAVDASMSIYQFLIVVGRTGMETLTNEAGD 272 M ++ L + D K + S+ ++ +DAS + Q I+ T E + Sbjct: 1 MTIRSLNLFIIDK--KHQHKSSLSSFQNCKLGIDASFYLTQ--IIHSFTPQELQSLAVNG 56 Query: 273 VTSHLQGMFSRTIRLLEA-GIKPVYVFDGKPPEMKKDELLKRHAKRK 410 + +LQ S + L I P++VF+G P + L+ K+K Sbjct: 57 ESEYLQHRISEFLEQLRTENITPIFVFNGIPLTFEASSQLEVPGKQK 103
>EXO1_DROME (Q24558) Exonuclease 1 (EC 3.1.-.-) (Exonuclease I) (Protein tosca)| Length = 732 Score = 28.5 bits (62), Expect = 7.6 Identities = 28/110 (25%), Positives = 42/110 (38%) Frame = +3 Query: 93 MGVKGLTKLLADNAPKSMREQKFESYFGRRIAVDASMSIYQFLIVVGRTGMETLTNEAGD 272 MG+ GL + K+ + + G +AVD +++ G G D Sbjct: 1 MGITGLIPFVG----KASSQLHLKDIRGSTVAVDTYCWLHK-----GVFGCAEKLARGED 51 Query: 273 VTSHLQGMFSRTIRLLEAGIKPVYVFDGKPPEMKKDELLKRHAKRK*STE 422 ++Q LL IKP+ VFDG+ K +R RK S E Sbjct: 52 TDVYIQYCLKYVNMLLSYDIKPILVFDGQHLPAKALTEKRRRDSRKQSKE 101 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 42,968,425 Number of Sequences: 219361 Number of extensions: 754055 Number of successful extensions: 2165 Number of sequences better than 10.0: 41 Number of HSP's better than 10.0 without gapping: 2127 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2157 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2570413340 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
