ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart53a06 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_467658.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1568 Score = 89.7 bits (45), Expect = 4e-15 Identities = 139/169 (82%), Gaps = 1/169 (0%) Strand = Plus / Plus Query: 65 cggcatgacggcgctgcagaagcacgcggcgttcttcgacggcgacaaggacggcgtcgt 124 |||| ||||||||||||||||||||||||||||||||||| ||| |||||| |||| Sbjct: 750 cggcgtgacggcgctgcagaagcacgcggcgttcttcgacaaggacggcgacggcatcgt 809 Query: 125 caccttctccgagacatacgcagcgtttcgggccctcggattcggatacgcccgcctcca 184 | || ||||||||||||||| | ||| || || |||||| |||| | | || ||||| Sbjct: 810 ctccctctccgagacatacgacgggttacgagcactcggactcgggtctggcc-tctcca 868 Query: 185 ccttgagcgctaccttcatcaatggcgtccttggcccccagaccagacc 233 ||||||||| |||||||||||||||||||| ||| |||||||||| Sbjct: 869 gcttgagcgccgccttcatcaatggcgtcctttccccaaagaccagacc 917 Score = 77.8 bits (39), Expect = 2e-11 Identities = 60/67 (89%) Strand = Plus / Plus Query: 59 cgcctgcggcatgacggcgctgcagaagcacgcggcgttcttcgacggcgacaaggacgg 118 |||| ||||||||||||| ||||||||||||||||||||||||||| ||||| ||||| Sbjct: 315 cgccggcggcatgacggcactgcagaagcacgcggcgttcttcgacaaggacaatgacgg 374 Query: 119 cgtcgtc 125 | ||||| Sbjct: 375 cttcgtc 381
>dbj|AK104748.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-038-F03, full insert sequence Length = 1058 Score = 89.7 bits (45), Expect = 4e-15 Identities = 139/169 (82%), Gaps = 1/169 (0%) Strand = Plus / Plus Query: 65 cggcatgacggcgctgcagaagcacgcggcgttcttcgacggcgacaaggacggcgtcgt 124 |||| ||||||||||||||||||||||||||||||||||| ||| |||||| |||| Sbjct: 238 cggcgtgacggcgctgcagaagcacgcggcgttcttcgacaaggacggcgacggcatcgt 297 Query: 125 caccttctccgagacatacgcagcgtttcgggccctcggattcggatacgcccgcctcca 184 | || ||||||||||||||| | ||| || || |||||| |||| | | || ||||| Sbjct: 298 ctccctctccgagacatacgacgggttacgagcactcggactcgggtctggcc-tctcca 356 Query: 185 ccttgagcgctaccttcatcaatggcgtccttggcccccagaccagacc 233 ||||||||| |||||||||||||||||||| ||| |||||||||| Sbjct: 357 gcttgagcgccgccttcatcaatggcgtcctttccccaaagaccagacc 405
>dbj|AK070347.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023054E24, full insert sequence Length = 1568 Score = 89.7 bits (45), Expect = 4e-15 Identities = 139/169 (82%), Gaps = 1/169 (0%) Strand = Plus / Plus Query: 65 cggcatgacggcgctgcagaagcacgcggcgttcttcgacggcgacaaggacggcgtcgt 124 |||| ||||||||||||||||||||||||||||||||||| ||| |||||| |||| Sbjct: 750 cggcgtgacggcgctgcagaagcacgcggcgttcttcgacaaggacggcgacggcatcgt 809 Query: 125 caccttctccgagacatacgcagcgtttcgggccctcggattcggatacgcccgcctcca 184 | || ||||||||||||||| | ||| || || |||||| |||| | | || ||||| Sbjct: 810 ctccctctccgagacatacgacgggttacgagcactcggactcgggtctggcc-tctcca 868 Query: 185 ccttgagcgctaccttcatcaatggcgtccttggcccccagaccagacc 233 ||||||||| |||||||||||||||||||| ||| |||||||||| Sbjct: 869 gcttgagcgccgccttcatcaatggcgtcctttccccaaagaccagacc 917 Score = 77.8 bits (39), Expect = 2e-11 Identities = 60/67 (89%) Strand = Plus / Plus Query: 59 cgcctgcggcatgacggcgctgcagaagcacgcggcgttcttcgacggcgacaaggacgg 118 |||| ||||||||||||| ||||||||||||||||||||||||||| ||||| ||||| Sbjct: 315 cgccggcggcatgacggcactgcagaagcacgcggcgttcttcgacaaggacaatgacgg 374 Query: 119 cgtcgtc 125 | ||||| Sbjct: 375 cttcgtc 381
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 79.8 bits (40), Expect = 4e-12 Identities = 70/80 (87%) Strand = Plus / Plus Query: 65 cggcatgacggcgctgcagaagcacgcggcgttcttcgacggcgacaaggacggcgtcgt 124 |||| ||||||||||||||||||||||||||||||||||| ||| |||||| |||| Sbjct: 30671382 cggcgtgacggcgctgcagaagcacgcggcgttcttcgacaaggacggcgacggcatcgt 30671441 Query: 125 caccttctccgagacatacg 144 | || ||||||||||||||| Sbjct: 30671442 ctccctctccgagacatacg 30671461 Score = 77.8 bits (39), Expect = 2e-11 Identities = 60/67 (89%) Strand = Plus / Plus Query: 59 cgcctgcggcatgacggcgctgcagaagcacgcggcgttcttcgacggcgacaaggacgg 118 |||| ||||||||||||| ||||||||||||||||||||||||||| ||||| ||||| Sbjct: 30661279 cgccggcggcatgacggcactgcagaagcacgcggcgttcttcgacaaggacaatgacgg 30661338 Query: 119 cgtcgtc 125 | ||||| Sbjct: 30661339 cttcgtc 30661345 Score = 61.9 bits (31), Expect = 9e-07 Identities = 58/67 (86%) Strand = Plus / Plus Query: 78 ctgcagaagcacgcggcgttcttcgacggcgacaaggacggcgtcgtcaccttctccgag 137 ||||||||||||| ||||||||||||| || || | |||||| || || ||||||||||| Sbjct: 30650072 ctgcagaagcacgtggcgttcttcgacagcaaccacgacggcatcatctccttctccgag 30650131 Query: 138 acatacg 144 || |||| Sbjct: 30650132 acgtacg 30650138 Score = 54.0 bits (27), Expect = 2e-04 Identities = 51/59 (86%) Strand = Plus / Plus Query: 72 acggcgctgcagaagcacgcggcgttcttcgacggcgacaaggacggcgtcgtcacctt 130 |||| ||| |||||||||| ||||||||||||| ||||| | |||||| || ||||||| Sbjct: 30655018 acggagctacagaagcacgtggcgttcttcgacagcgaccacgacggcatcatcacctt 30655076 Score = 52.0 bits (26), Expect = 0.001 Identities = 47/54 (87%) Strand = Plus / Plus Query: 180 ctccaccttgagcgctaccttcatcaatggcgtccttggcccccagaccagacc 233 ||||| ||||||||| |||||||||||||||||||| ||| |||||||||| Sbjct: 30671622 ctccagcttgagcgccgccttcatcaatggcgtcctttccccaaagaccagacc 30671675 Score = 44.1 bits (22), Expect = 0.22 Identities = 28/30 (93%) Strand = Plus / Plus Query: 182 ccaccttgagcgctaccttcatcaatggcg 211 ||||| |||| ||||||||||||||||||| Sbjct: 30655511 ccaccgtgagtgctaccttcatcaatggcg 30655540
>dbj|AP004880.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0487D09 Length = 161531 Score = 79.8 bits (40), Expect = 4e-12 Identities = 70/80 (87%) Strand = Plus / Plus Query: 65 cggcatgacggcgctgcagaagcacgcggcgttcttcgacggcgacaaggacggcgtcgt 124 |||| ||||||||||||||||||||||||||||||||||| ||| |||||| |||| Sbjct: 11529 cggcgtgacggcgctgcagaagcacgcggcgttcttcgacaaggacggcgacggcatcgt 11588 Query: 125 caccttctccgagacatacg 144 | || ||||||||||||||| Sbjct: 11589 ctccctctccgagacatacg 11608 Score = 77.8 bits (39), Expect = 2e-11 Identities = 60/67 (89%) Strand = Plus / Plus Query: 59 cgcctgcggcatgacggcgctgcagaagcacgcggcgttcttcgacggcgacaaggacgg 118 |||| ||||||||||||| ||||||||||||||||||||||||||| ||||| ||||| Sbjct: 1426 cgccggcggcatgacggcactgcagaagcacgcggcgttcttcgacaaggacaatgacgg 1485 Query: 119 cgtcgtc 125 | ||||| Sbjct: 1486 cttcgtc 1492 Score = 52.0 bits (26), Expect = 0.001 Identities = 47/54 (87%) Strand = Plus / Plus Query: 180 ctccaccttgagcgctaccttcatcaatggcgtccttggcccccagaccagacc 233 ||||| ||||||||| |||||||||||||||||||| ||| |||||||||| Sbjct: 11769 ctccagcttgagcgccgccttcatcaatggcgtcctttccccaaagaccagacc 11822
>dbj|AP005319.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0643A10 Length = 187931 Score = 79.8 bits (40), Expect = 4e-12 Identities = 70/80 (87%) Strand = Plus / Plus Query: 65 cggcatgacggcgctgcagaagcacgcggcgttcttcgacggcgacaaggacggcgtcgt 124 |||| ||||||||||||||||||||||||||||||||||| ||| |||||| |||| Sbjct: 183390 cggcgtgacggcgctgcagaagcacgcggcgttcttcgacaaggacggcgacggcatcgt 183449 Query: 125 caccttctccgagacatacg 144 | || ||||||||||||||| Sbjct: 183450 ctccctctccgagacatacg 183469 Score = 77.8 bits (39), Expect = 2e-11 Identities = 60/67 (89%) Strand = Plus / Plus Query: 59 cgcctgcggcatgacggcgctgcagaagcacgcggcgttcttcgacggcgacaaggacgg 118 |||| ||||||||||||| ||||||||||||||||||||||||||| ||||| ||||| Sbjct: 173287 cgccggcggcatgacggcactgcagaagcacgcggcgttcttcgacaaggacaatgacgg 173346 Query: 119 cgtcgtc 125 | ||||| Sbjct: 173347 cttcgtc 173353 Score = 61.9 bits (31), Expect = 9e-07 Identities = 58/67 (86%) Strand = Plus / Plus Query: 78 ctgcagaagcacgcggcgttcttcgacggcgacaaggacggcgtcgtcaccttctccgag 137 ||||||||||||| ||||||||||||| || || | |||||| || || ||||||||||| Sbjct: 162080 ctgcagaagcacgtggcgttcttcgacagcaaccacgacggcatcatctccttctccgag 162139 Query: 138 acatacg 144 || |||| Sbjct: 162140 acgtacg 162146 Score = 54.0 bits (27), Expect = 2e-04 Identities = 51/59 (86%) Strand = Plus / Plus Query: 72 acggcgctgcagaagcacgcggcgttcttcgacggcgacaaggacggcgtcgtcacctt 130 |||| ||| |||||||||| ||||||||||||| ||||| | |||||| || ||||||| Sbjct: 167026 acggagctacagaagcacgtggcgttcttcgacagcgaccacgacggcatcatcacctt 167084 Score = 52.0 bits (26), Expect = 0.001 Identities = 47/54 (87%) Strand = Plus / Plus Query: 180 ctccaccttgagcgctaccttcatcaatggcgtccttggcccccagaccagacc 233 ||||| ||||||||| |||||||||||||||||||| ||| |||||||||| Sbjct: 183630 ctccagcttgagcgccgccttcatcaatggcgtcctttccccaaagaccagacc 183683 Score = 44.1 bits (22), Expect = 0.22 Identities = 28/30 (93%) Strand = Plus / Plus Query: 182 ccaccttgagcgctaccttcatcaatggcg 211 ||||| |||| ||||||||||||||||||| Sbjct: 167519 ccaccgtgagtgctaccttcatcaatggcg 167548
>gb|BT017761.1| Zea mays clone EL01N0501F02.c mRNA sequence Length = 829 Score = 77.8 bits (39), Expect = 2e-11 Identities = 60/67 (89%) Strand = Plus / Plus Query: 65 cggcatgacggcgctgcagaagcacgcggcgttcttcgacggcgacaaggacggcgtcgt 124 ||||||||||| |||||||||||||| ||||||||||||| || || | ||||||||| | Sbjct: 193 cggcatgacggagctgcagaagcacgtggcgttcttcgaccgcaaccacgacggcgtcat 252 Query: 125 caccttc 131 ||||||| Sbjct: 253 caccttc 259
>gb|AY107241.1| Zea mays PCO116653 mRNA sequence Length = 1069 Score = 73.8 bits (37), Expect = 2e-10 Identities = 79/93 (84%) Strand = Plus / Plus Query: 71 gacggcgctgcagaagcacgcggcgttcttcgacggcgacaaggacggcgtcgtcacctt 130 |||||||||| | ||||||||| ||||||||||| |||| |||||||||||| |||| Sbjct: 244 gacggcgctgtacaagcacgcgtcgttcttcgaccgcgatggcgacggcgtcgtctcctt 303 Query: 131 ctccgagacatacgcagcgtttcgggccctcgg 163 ||| ||||| |||| ||||||||||| ||||| Sbjct: 304 ctcggagacgtacggcgcgtttcgggcactcgg 336
>gb|AY110261.1| Zea mays CL44026_1 mRNA sequence Length = 837 Score = 69.9 bits (35), Expect = 4e-09 Identities = 59/67 (88%) Strand = Plus / Minus Query: 65 cggcatgacggcgctgcagaagcacgcggcgttcttcgacggcgacaaggacggcgtcgt 124 ||||||||||| |||||||||||||| ||||||||||||| || || | |||||| || | Sbjct: 660 cggcatgacggagctgcagaagcacgtggcgttcttcgaccgcaaccacgacggcatcat 601 Query: 125 caccttc 131 ||||||| Sbjct: 600 caccttc 594
>ref|XM_467656.1| Oryza sativa (japonica cultivar-group), mRNA Length = 654 Score = 65.9 bits (33), Expect = 6e-08 Identities = 75/89 (84%) Strand = Plus / Plus Query: 78 ctgcagaagcacgcggcgttcttcgacggcgacaaggacggcgtcgtcaccttctccgag 137 ||||||||||||| ||||||||||||| || || | |||||| || || ||||||||||| Sbjct: 124 ctgcagaagcacgtggcgttcttcgacagcaaccacgacggcatcatctccttctccgag 183 Query: 138 acatacgcagcgtttcgggccctcggatt 166 || |||| || ||| || || |||||||| Sbjct: 184 acgtacgaagggttccgtgcgctcggatt 212
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 52.0 bits (26), Expect = 0.001 Identities = 44/50 (88%) Strand = Plus / Minus Query: 70 tgacggcgctgcagaagcacgcggcgttcttcgacggcgacaaggacggc 119 ||||| ||||||||||||||| || ||||||||| || ||||||||||| Sbjct: 8025172 tgacgccgctgcagaagcacgtcgccttcttcgaccgcaacaaggacggc 8025123
>dbj|AP005518.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0046H10 Length = 155544 Score = 52.0 bits (26), Expect = 0.001 Identities = 44/50 (88%) Strand = Plus / Minus Query: 70 tgacggcgctgcagaagcacgcggcgttcttcgacggcgacaaggacggc 119 ||||| ||||||||||||||| || ||||||||| || ||||||||||| Sbjct: 132690 tgacgccgctgcagaagcacgtcgccttcttcgaccgcaacaaggacggc 132641
>dbj|AP003490.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0592E11 Length = 153734 Score = 52.0 bits (26), Expect = 0.001 Identities = 44/50 (88%) Strand = Plus / Minus Query: 70 tgacggcgctgcagaagcacgcggcgttcttcgacggcgacaaggacggc 119 ||||| ||||||||||||||| || ||||||||| || ||||||||||| Sbjct: 48941 tgacgccgctgcagaagcacgtcgccttcttcgaccgcaacaaggacggc 48892
>dbj|AK104598.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-308-F08, full insert sequence Length = 1063 Score = 52.0 bits (26), Expect = 0.001 Identities = 44/50 (88%) Strand = Plus / Plus Query: 70 tgacggcgctgcagaagcacgcggcgttcttcgacggcgacaaggacggc 119 ||||| ||||||||||||||| || ||||||||| || ||||||||||| Sbjct: 321 tgacgccgctgcagaagcacgtcgccttcttcgaccgcaacaaggacggc 370
>dbj|AK073727.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033057G06, full insert sequence Length = 1064 Score = 52.0 bits (26), Expect = 0.001 Identities = 44/50 (88%) Strand = Plus / Plus Query: 70 tgacggcgctgcagaagcacgcggcgttcttcgacggcgacaaggacggc 119 ||||| ||||||||||||||| || ||||||||| || ||||||||||| Sbjct: 322 tgacgccgctgcagaagcacgtcgccttcttcgaccgcaacaaggacggc 371
>dbj|AK060792.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-033-E03, full insert sequence Length = 2067 Score = 52.0 bits (26), Expect = 0.001 Identities = 44/50 (88%) Strand = Plus / Plus Query: 70 tgacggcgctgcagaagcacgcggcgttcttcgacggcgacaaggacggc 119 ||||| ||||||||||||||| || ||||||||| || ||||||||||| Sbjct: 1371 tgacgccgctgcagaagcacgtcgccttcttcgaccgcaacaaggacggc 1420
>gb|CP000133.1| Rhizobium etli CFN 42, complete genome Length = 4381608 Score = 44.1 bits (22), Expect = 0.22 Identities = 22/22 (100%) Strand = Plus / Minus Query: 107 cgacaaggacggcgtcgtcacc 128 |||||||||||||||||||||| Sbjct: 1608197 cgacaaggacggcgtcgtcacc 1608176
>ref|XM_812370.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053506227.190) partial mRNA Length = 849 Score = 42.1 bits (21), Expect = 0.88 Identities = 24/25 (96%) Strand = Plus / Plus Query: 69 atgacggcgctgcagaagcacgcgg 93 ||||||||||||||| ||||||||| Sbjct: 538 atgacggcgctgcagcagcacgcgg 562
>emb|CR555306.1| Azoarcus sp. EbN1 complete genome Length = 4296230 Score = 42.1 bits (21), Expect = 0.88 Identities = 21/21 (100%) Strand = Plus / Plus Query: 91 cggcgttcttcgacggcgaca 111 ||||||||||||||||||||| Sbjct: 2756661 cggcgttcttcgacggcgaca 2756681
>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome Length = 2909809 Score = 42.1 bits (21), Expect = 0.88 Identities = 21/21 (100%) Strand = Plus / Minus Query: 108 gacaaggacggcgtcgtcacc 128 ||||||||||||||||||||| Sbjct: 1579131 gacaaggacggcgtcgtcacc 1579111
>ref|XM_483250.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1974 Score = 40.1 bits (20), Expect = 3.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 72 acggcgctgcagaagcacgcggcg 95 |||||||||||||||| ||||||| Sbjct: 352 acggcgctgcagaagctcgcggcg 375
>ref|XM_505602.1| Yarrowia lipolytica CLIB122, YALI0F18964g predicted mRNA Length = 2691 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 154 gggccctcggattcggatac 173 |||||||||||||||||||| Sbjct: 830 gggccctcggattcggatac 849
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 40.1 bits (20), Expect = 3.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 104 cggcgacaaggacggcgtcgtcaccttc 131 |||| |||||||||||| |||||||||| Sbjct: 3439764 cggcaacaaggacggcgacgtcaccttc 3439791
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 101 cgacggcgacaaggacggcg 120 |||||||||||||||||||| Sbjct: 17841510 cgacggcgacaaggacggcg 17841529
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 3.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 72 acggcgctgcagaagcacgcggcg 95 |||||||||||||||| ||||||| Sbjct: 25053945 acggcgctgcagaagctcgcggcg 25053968 Score = 40.1 bits (20), Expect = 3.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 120 gtcgtcaccttctccgagacatac 143 |||||||||||||||| ||||||| Sbjct: 6296306 gtcgtcaccttctccgcgacatac 6296283
>dbj|AP003919.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1734_E04 Length = 101439 Score = 40.1 bits (20), Expect = 3.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 120 gtcgtcaccttctccgagacatac 143 |||||||||||||||| ||||||| Sbjct: 82443 gtcgtcaccttctccgcgacatac 82420
>dbj|AP005245.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0025J22 Length = 175355 Score = 40.1 bits (20), Expect = 3.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 72 acggcgctgcagaagcacgcggcg 95 |||||||||||||||| ||||||| Sbjct: 110061 acggcgctgcagaagctcgcggcg 110084
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 101 cgacggcgacaaggacggcg 120 |||||||||||||||||||| Sbjct: 17767829 cgacggcgacaaggacggcg 17767848
>emb|AL731787.3|CNS08C8B Oryza sativa chromosome 12, . BAC OSJNBb0014C10 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 142246 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 101 cgacggcgacaaggacggcg 120 |||||||||||||||||||| Sbjct: 60708 cgacggcgacaaggacggcg 60727
>emb|CR382132.1| Yarrowia lipolytica chromosome F of strain CLIB122 of Yarrowia lipolytica Length = 4003362 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 154 gggccctcggattcggatac 173 |||||||||||||||||||| Sbjct: 2537580 gggccctcggattcggatac 2537599 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,387,882 Number of Sequences: 3902068 Number of extensions: 1387882 Number of successful extensions: 25134 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 31 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 24747 Number of HSP's gapped (non-prelim): 374 length of query: 268 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 246 effective length of database: 17,147,199,772 effective search space: 4218211143912 effective search space used: 4218211143912 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
