ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart52h10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1Y5621_ARATH (O81488) PHD finger protein At5g26210 150 1e-36
2ARLC_MAIZE (P13526) Anthocyanin regulatory Lc protein 32 0.76
3ARRS_MAIZE (P13027) Anthocyanin regulatory R-S protein 32 0.76
4PRPH_MESAU (P06680) Acidic proline-rich protein HP43A precursor 30 1.7
5ATG11_NEUCR (Q7S055) Autophagy-related protein 11 30 2.2
6BAG1_HUMAN (Q99933) BAG family molecular chaperone regulator 1 (... 29 4.9
7ETV2_MOUSE (P41163) ETS translocation variant 2 (Ets-related pro... 28 6.4
8FDHA_DESGI (Q934F5) Formate dehydrogenase alpha subunit precurso... 28 8.3

>Y5621_ARATH (O81488) PHD finger protein At5g26210|
          Length = 255

 Score =  150 bits (379), Expect = 1e-36
 Identities = 67/94 (71%), Positives = 79/94 (84%)
 Frame = +2

Query: 131 PRTVEDIFKDYRARRNAIHRALTHDVEEFYAQCDPEKENLCLYGYANEAWEVALPAEEVP 310
           PRTVE++F+D++ RR  + +ALT DV+EF+  CDPEKENLCLYG+ NE WEV LPAEEVP
Sbjct: 9   PRTVEEVFRDFKGRRAGMIKALTTDVQEFFRLCDPEKENLCLYGHPNEHWEVNLPAEEVP 68

Query: 311 TELPEPALGINFARDGMKRSDWLALVAVHSDSWL 412
            ELPEP LGINFARDGM   DWL+LVAVHSD+WL
Sbjct: 69  PELPEPVLGINFARDGMAEKDWLSLVAVHSDAWL 102



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>ARLC_MAIZE (P13526) Anthocyanin regulatory Lc protein|
          Length = 610

 Score = 31.6 bits (70), Expect = 0.76
 Identities = 17/46 (36%), Positives = 24/46 (52%)
 Frame = +2

Query: 194 LTHDVEEFYAQCDPEKENLCLYGYANEAWEVALPAEEVPTELPEPA 331
           +T ++EEFY+ CD E +   L     + W V     EVP   P+PA
Sbjct: 282 ITKEIEEFYSLCD-EMDLQALPLPLEDGWTVDASNFEVPCSSPQPA 326



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>ARRS_MAIZE (P13027) Anthocyanin regulatory R-S protein|
          Length = 612

 Score = 31.6 bits (70), Expect = 0.76
 Identities = 17/46 (36%), Positives = 24/46 (52%)
 Frame = +2

Query: 194 LTHDVEEFYAQCDPEKENLCLYGYANEAWEVALPAEEVPTELPEPA 331
           +T ++EEFY+ CD E +   L     + W V     EVP   P+PA
Sbjct: 287 ITKEIEEFYSLCD-EMDLQALPLPLEDGWTVDASNFEVPCSSPQPA 331



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>PRPH_MESAU (P06680) Acidic proline-rich protein HP43A precursor|
          Length = 183

 Score = 30.4 bits (67), Expect = 1.7
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 9   DQSSPLSLPRLAGDHERRRPPSPG 80
           D ++P   P+  GDH++ RPP PG
Sbjct: 63  DGNAPEGPPQQGGDHQKPRPPKPG 86



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>ATG11_NEUCR (Q7S055) Autophagy-related protein 11|
          Length = 1300

 Score = 30.0 bits (66), Expect = 2.2
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +2

Query: 272 EAWEVALPAEEVPTELPEPALGI 340
           + WE   PA++VPTELP+   GI
Sbjct: 685 DIWECLAPADDVPTELPDLLEGI 707



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>BAG1_HUMAN (Q99933) BAG family molecular chaperone regulator 1 (BCL-2-binding|
           athanogene-1) (BAG-1) (Glucocorticoid
           receptor-associated protein RAP46)
          Length = 274

 Score = 28.9 bits (63), Expect = 4.9
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +2

Query: 152 FKDYRARRNAIHRALTHDVEEFYAQCDPEKENLC 253
           FKD R +R    + L   V+ F A+CD  ++N+C
Sbjct: 230 FKDSRLKR----KGLVKKVQAFLAECDTVEQNIC 259



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>ETV2_MOUSE (P41163) ETS translocation variant 2 (Ets-related protein 71)|
          Length = 335

 Score = 28.5 bits (62), Expect = 6.4
 Identities = 17/53 (32%), Positives = 23/53 (43%)
 Frame = +2

Query: 251 CLYGYANEAWEVALPAEEVPTELPEPALGINFARDGMKRSDWLALVAVHSDSW 409
           C  G+    W  ALP E+VP +    A  + ++R      DW  L    SD W
Sbjct: 50  CWKGFPELDWNPALPHEDVPFQAEPVAHPLPWSR------DWTDLGCNTSDPW 96



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>FDHA_DESGI (Q934F5) Formate dehydrogenase alpha subunit precursor (EC 1.2.1.2)|
            (FDH alpha subunit) (Formate dehydrogenase large subunit)
          Length = 1012

 Score = 28.1 bits (61), Expect = 8.3
 Identities = 20/76 (26%), Positives = 28/76 (36%), Gaps = 6/76 (7%)
 Frame = +2

Query: 200  HDVEEFYAQCDPEKENLCLYGYANEAWEVALPAEEVPTEL-PEPALGINFARD-----GM 361
            H   E  A CDP    +C      E W+  L     P  L  EP +    + +     G+
Sbjct: 870  HFATEEKAVCDPRYPFICSTYRVTEHWQTGLMTRNTPWLLEAEPQMFCEMSEELATLRGI 929

Query: 362  KRSDWLALVAVHSDSW 409
            K  D + L +V    W
Sbjct: 930  KNGDKVILESVRGKLW 945


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,317,390
Number of Sequences: 219361
Number of extensions: 414645
Number of successful extensions: 1312
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1300
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1312
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 2169600302
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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