ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart52g12 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK072559.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023132A10, full insert sequence Length = 1274 Score = 317 bits (160), Expect = 1e-83 Identities = 232/256 (90%) Strand = Plus / Plus Query: 37 atggcaacgctcaaggtcccctccaacgtccccgctctcgccgacggctgcgacaacctc 96 ||||| ||||||| ||||||||| |||||| | ||||||||| ||||||| | ||| Sbjct: 96 atggcgacgctcaccgtcccctccgccgtcccgcccgtcgccgacgactgcgaccagctc 155 Query: 97 cgcaaggccttccaagggtggggcacgaacgaggcgctcatcatctccatcctgggccac 156 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct: 156 cgcaaggccttccaagggtggggcacgaacgaggcgctcatcatctccatcctggcccac 215 Query: 157 cgcgacgccgcgcagcgccgcgccatccgcaagcactacgccgacacctacggcgaggag 216 |||||||| |||||||| |||||||||||| ||||||||||||||||||||||||| Sbjct: 216 cgcgacgcggcgcagcggcgcgccatccgccgcgcctacgccgacacctacggcgaggag 275 Query: 217 ctgctccggagcatcaccgacgagatctcaggcgacttcgagagggccgtgatcctgtgg 276 || ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 276 ctcctccgcagcatcaccgacgagatctccggcgacttcgagagggccgtgatcctgtgg 335 Query: 277 acgctggaccccgcgg 292 ||||||||||| |||| Sbjct: 336 acgctggacccggcgg 351
>emb|X98244.2|ZMANNP33 Z.mays mRNA for annexin p33 Length = 1277 Score = 256 bits (129), Expect = 3e-65 Identities = 227/257 (88%), Gaps = 2/257 (0%) Strand = Plus / Plus Query: 37 atggcaacgctcaaggtcccctccaacgtccccgctctcgccgacggctgcgacaacctc 96 |||||||||||||||||||| ||| || || | ||||||| | ||||||| | || Sbjct: 85 atggcaacgctcaaggtcccagccactgttcctcccgtcgccgatgactgcgaccagctg 144 Query: 97 cgcaaggccttccaagggtggggcacgaacgaggcgctcatcatctccatcctgggccac 156 ||||| || |||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 145 cgcaaagcattccaagggtggggcacgaacgaggcgctcatcatctccatcctcggccac 204 Query: 157 cgcgacgccgcgcagcgccgcgccatccgcaagcac-tacgccgacacctacggcgagga 215 |||||||||||||||||||||||||||||| || | |||||||| ||||||||||||| Sbjct: 205 cgcgacgccgcgcagcgccgcgccatccgc-cgcgcttacgccgaggcctacggcgagga 263 Query: 216 gctgctccggagcatcaccgacgagatctcaggcgacttcgagagggccgtgatcctgtg 275 ||| ||||| |||||| ||||||||||| ||||||||||||||||||||||||||||| Sbjct: 264 gctcctccgctccatcacggacgagatctccggcgacttcgagagggccgtgatcctgtg 323 Query: 276 gacgctggaccccgcgg 292 |||||||||||| |||| Sbjct: 324 gacgctggacccagcgg 340
>gb|AY105151.1| Zea mays PCO072293 mRNA sequence Length = 1369 Score = 256 bits (129), Expect = 3e-65 Identities = 227/257 (88%), Gaps = 2/257 (0%) Strand = Plus / Plus Query: 37 atggcaacgctcaaggtcccctccaacgtccccgctctcgccgacggctgcgacaacctc 96 |||||||||||||||||||| ||| || || | ||||||| | ||||||| | || Sbjct: 102 atggcaacgctcaaggtcccagccactgttcctcccgtcgccgatgactgcgaccagctg 161 Query: 97 cgcaaggccttccaagggtggggcacgaacgaggcgctcatcatctccatcctgggccac 156 ||||| || |||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 162 cgcaaagcattccaagggtggggcacgaacgaggcgctcatcatctccatcctcggccac 221 Query: 157 cgcgacgccgcgcagcgccgcgccatccgcaagcac-tacgccgacacctacggcgagga 215 |||||||||||||||||||||||||||||| || | |||||||| ||||||||||||| Sbjct: 222 cgcgacgccgcgcagcgccgcgccatccgc-cgcgcttacgccgaggcctacggcgagga 280 Query: 216 gctgctccggagcatcaccgacgagatctcaggcgacttcgagagggccgtgatcctgtg 275 ||| ||||| |||||| ||||||||||| ||||||||||||||||||||||||||||| Sbjct: 281 gctcctccgctccatcacggacgagatctccggcgacttcgagagggccgtgatcctgtg 340 Query: 276 gacgctggaccccgcgg 292 |||||||||||| |||| Sbjct: 341 gacgctggacccagcgg 357
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 208 bits (105), Expect = 7e-51 Identities = 138/149 (92%) Strand = Plus / Plus Query: 110 aagggtggggcacgaacgaggcgctcatcatctccatcctgggccaccgcgacgccgcgc 169 |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| Sbjct: 6261826 aagggtggggcacgaacgaggcgctcatcatctccatcctggcccaccgcgacgcggcgc 6261885 Query: 170 agcgccgcgccatccgcaagcactacgccgacacctacggcgaggagctgctccggagca 229 |||| |||||||||||| ||||||||||||||||||||||||||| ||||| |||| Sbjct: 6261886 agcggcgcgccatccgccgcgcctacgccgacacctacggcgaggagctcctccgcagca 6261945 Query: 230 tcaccgacgagatctcaggcgacttcgag 258 |||||||||||||||| |||||||||||| Sbjct: 6261946 tcaccgacgagatctccggcgacttcgag 6261974 Score = 63.9 bits (32), Expect = 3e-07 Identities = 35/36 (97%) Strand = Plus / Plus Query: 257 agagggccgtgatcctgtggacgctggaccccgcgg 292 ||||||||||||||||||||||||||||||| |||| Sbjct: 6262084 agagggccgtgatcctgtggacgctggacccggcgg 6262119 Score = 58.0 bits (29), Expect = 2e-05 Identities = 65/77 (84%) Strand = Plus / Plus Query: 37 atggcaacgctcaaggtcccctccaacgtccccgctctcgccgacggctgcgacaacctc 96 ||||| ||||||| ||||||||| |||||| | ||||||||| ||||||| | ||| Sbjct: 6261629 atggcgacgctcaccgtcccctccgccgtcccgcccgtcgccgacgactgcgaccagctc 6261688 Query: 97 cgcaaggccttccaagg 113 ||||||||||||||||| Sbjct: 6261689 cgcaaggccttccaagg 6261705
>dbj|AP004727.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0516A04 Length = 145107 Score = 208 bits (105), Expect = 7e-51 Identities = 138/149 (92%) Strand = Plus / Plus Query: 110 aagggtggggcacgaacgaggcgctcatcatctccatcctgggccaccgcgacgccgcgc 169 |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| Sbjct: 55902 aagggtggggcacgaacgaggcgctcatcatctccatcctggcccaccgcgacgcggcgc 55961 Query: 170 agcgccgcgccatccgcaagcactacgccgacacctacggcgaggagctgctccggagca 229 |||| |||||||||||| ||||||||||||||||||||||||||| ||||| |||| Sbjct: 55962 agcggcgcgccatccgccgcgcctacgccgacacctacggcgaggagctcctccgcagca 56021 Query: 230 tcaccgacgagatctcaggcgacttcgag 258 |||||||||||||||| |||||||||||| Sbjct: 56022 tcaccgacgagatctccggcgacttcgag 56050 Score = 63.9 bits (32), Expect = 3e-07 Identities = 35/36 (97%) Strand = Plus / Plus Query: 257 agagggccgtgatcctgtggacgctggaccccgcgg 292 ||||||||||||||||||||||||||||||| |||| Sbjct: 56160 agagggccgtgatcctgtggacgctggacccggcgg 56195 Score = 58.0 bits (29), Expect = 2e-05 Identities = 65/77 (84%) Strand = Plus / Plus Query: 37 atggcaacgctcaaggtcccctccaacgtccccgctctcgccgacggctgcgacaacctc 96 ||||| ||||||| ||||||||| |||||| | ||||||||| ||||||| | ||| Sbjct: 55705 atggcgacgctcaccgtcccctccgccgtcccgcccgtcgccgacgactgcgaccagctc 55764 Query: 97 cgcaaggccttccaagg 113 ||||||||||||||||| Sbjct: 55765 cgcaaggccttccaagg 55781
>ref|XM_467846.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1223 Score = 151 bits (76), Expect = 1e-33 Identities = 166/196 (84%) Strand = Plus / Plus Query: 97 cgcaaggccttccaagggtggggcacgaacgaggcgctcatcatctccatcctgggccac 156 |||||||| ||| |||||||||||||||||||| |||||||||||||||||| | |||| Sbjct: 176 cgcaaggcgttcaaagggtggggcacgaacgagaagctcatcatctccatcctcgcccac 235 Query: 157 cgcgacgccgcgcagcgccgcgccatccgcaagcactacgccgacacctacggcgaggag 216 |||||||| ||||||||||| || |||||| ||||||||| | |||||||||||| Sbjct: 236 cgcgacgcggcgcagcgccgggcgatccgccgcgcctacgccgaggcgtacggcgaggag 295 Query: 217 ctgctccggagcatcaccgacgagatctcaggcgacttcgagagggccgtgatcctgtgg 276 |||||||| | ||| |||||||||| ||| | ||||||||||| ||||||| |||| Sbjct: 296 ctgctccgcgccctcaacgacgagatccacggcaaattcgagagggcggtgatccagtgg 355 Query: 277 acgctggaccccgcgg 292 ||||||||||| |||| Sbjct: 356 acgctggacccggcgg 371
>dbj|AK101787.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033065F07, full insert sequence Length = 1223 Score = 151 bits (76), Expect = 1e-33 Identities = 166/196 (84%) Strand = Plus / Plus Query: 97 cgcaaggccttccaagggtggggcacgaacgaggcgctcatcatctccatcctgggccac 156 |||||||| ||| |||||||||||||||||||| |||||||||||||||||| | |||| Sbjct: 176 cgcaaggcgttcaaagggtggggcacgaacgagaagctcatcatctccatcctcgcccac 235 Query: 157 cgcgacgccgcgcagcgccgcgccatccgcaagcactacgccgacacctacggcgaggag 216 |||||||| ||||||||||| || |||||| ||||||||| | |||||||||||| Sbjct: 236 cgcgacgcggcgcagcgccgggcgatccgccgcgcctacgccgaggcgtacggcgaggag 295 Query: 217 ctgctccggagcatcaccgacgagatctcaggcgacttcgagagggccgtgatcctgtgg 276 |||||||| | ||| |||||||||| ||| | ||||||||||| ||||||| |||| Sbjct: 296 ctgctccgcgccctcaacgacgagatccacggcaaattcgagagggcggtgatccagtgg 355 Query: 277 acgctggaccccgcgg 292 ||||||||||| |||| Sbjct: 356 acgctggacccggcgg 371
>gb|AY105105.1| Zea mays PCO122403 mRNA sequence Length = 1401 Score = 125 bits (63), Expect = 8e-26 Identities = 165/199 (82%) Strand = Plus / Plus Query: 94 ctccgcaaggccttccaagggtggggcacgaacgaggcgctcatcatctccatcctgggc 153 |||| |||||| ||| |||| |||||||| |||||| ||| |||||||||||||||| | Sbjct: 283 ctccacaaggctttcgaaggttggggcaccaacgagaagctgatcatctccatcctggcc 342 Query: 154 caccgcgacgccgcgcagcgccgcgccatccgcaagcactacgccgacacctacggcgag 213 |||||| ||||||||||||||||||| |||||| ||||||||| | ||||| || Sbjct: 343 caccgcaacgccgcgcagcgccgcgcgatccgccgcggctacgccgaggcgtacgggaag 402 Query: 214 gagctgctccggagcatcaccgacgagatctcaggcgacttcgagagggccgtgatcctg 273 ||||||||||| || |||||||||| ||| | ||||||||||| ||||||||| Sbjct: 403 gagctgctccgcgctctcggcgacgagatccacggcaagttcgagagggcggtgatcctg 462 Query: 274 tggacgctggaccccgcgg 292 ||||||||||||||||||| Sbjct: 463 tggacgctggaccccgcgg 481
>emb|X98245.1|ZMANNP35 Z.mays mRNA for annexin p35 Length = 1257 Score = 109 bits (55), Expect = 5e-21 Identities = 163/199 (81%) Strand = Plus / Plus Query: 94 ctccgcaaggccttccaagggtggggcacgaacgaggcgctcatcatctccatcctgggc 153 |||| |||||||||| |||| |||||||| |||||| || |||||||||||||||| | Sbjct: 189 ctccacaaggccttcgaaggttggggcaccaacgagaaactgatcatctccatcctggcc 248 Query: 154 caccgcgacgccgcgcagcgccgcgccatccgcaagcactacgccgacacctacggcgag 213 |||||| ||||||||||| |||||| |||||| ||| ||||| ||||||| || Sbjct: 249 caccgcaacgccgcgcaggcccgcgcgatccgccgcggctatgccgaggcctacgggaag 308 Query: 214 gagctgctccggagcatcaccgacgagatctcaggcgacttcgagagggccgtgatcctg 273 ||||||||||| || |||||||||| ||| | ||||||||||| ||||||||| Sbjct: 309 gagctgctccgcgctctcggcgacgagatccacggcaagttcgagagggcggtgatcctg 368 Query: 274 tggacgctggaccccgcgg 292 ||||||||||||||||||| Sbjct: 369 tggacgctggaccccgcgg 387
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 107 bits (54), Expect = 2e-20 Identities = 99/114 (86%) Strand = Plus / Minus Query: 111 agggtggggcacgaacgaggcgctcatcatctccatcctgggccaccgcgacgccgcgca 170 ||||||||||||||||||| |||||||||||||||||| | |||||||||||| ||||| Sbjct: 31718644 agggtggggcacgaacgagaagctcatcatctccatcctcgcccaccgcgacgcggcgca 31718585 Query: 171 gcgccgcgccatccgcaagcactacgccgacacctacggcgaggagctgctccg 224 |||||| || |||||| ||||||||| | |||||||||||||||||||| Sbjct: 31718584 gcgccgggcgatccgccgcgcctacgccgaggcgtacggcgaggagctgctccg 31718531 Score = 48.1 bits (24), Expect = 0.016 Identities = 33/36 (91%) Strand = Plus / Minus Query: 257 agagggccgtgatcctgtggacgctggaccccgcgg 292 ||||||| ||||||| ||||||||||||||| |||| Sbjct: 31718402 agagggcggtgatccagtggacgctggacccggcgg 31718367
>dbj|AP005012.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0627E03 Length = 159861 Score = 107 bits (54), Expect = 2e-20 Identities = 99/114 (86%) Strand = Plus / Minus Query: 111 agggtggggcacgaacgaggcgctcatcatctccatcctgggccaccgcgacgccgcgca 170 ||||||||||||||||||| |||||||||||||||||| | |||||||||||| ||||| Sbjct: 14442 agggtggggcacgaacgagaagctcatcatctccatcctcgcccaccgcgacgcggcgca 14383 Query: 171 gcgccgcgccatccgcaagcactacgccgacacctacggcgaggagctgctccg 224 |||||| || |||||| ||||||||| | |||||||||||||||||||| Sbjct: 14382 gcgccgggcgatccgccgcgcctacgccgaggcgtacggcgaggagctgctccg 14329 Score = 48.1 bits (24), Expect = 0.016 Identities = 33/36 (91%) Strand = Plus / Minus Query: 257 agagggccgtgatcctgtggacgctggaccccgcgg 292 ||||||| ||||||| ||||||||||||||| |||| Sbjct: 14200 agagggcggtgatccagtggacgctggacccggcgg 14165
>dbj|AP004119.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1288_G09 Length = 109672 Score = 107 bits (54), Expect = 2e-20 Identities = 99/114 (86%) Strand = Plus / Minus Query: 111 agggtggggcacgaacgaggcgctcatcatctccatcctgggccaccgcgacgccgcgca 170 ||||||||||||||||||| |||||||||||||||||| | |||||||||||| ||||| Sbjct: 98431 agggtggggcacgaacgagaagctcatcatctccatcctcgcccaccgcgacgcggcgca 98372 Query: 171 gcgccgcgccatccgcaagcactacgccgacacctacggcgaggagctgctccg 224 |||||| || |||||| ||||||||| | |||||||||||||||||||| Sbjct: 98371 gcgccgggcgatccgccgcgcctacgccgaggcgtacggcgaggagctgctccg 98318 Score = 48.1 bits (24), Expect = 0.016 Identities = 33/36 (91%) Strand = Plus / Minus Query: 257 agagggccgtgatcctgtggacgctggaccccgcgg 292 ||||||| ||||||| ||||||||||||||| |||| Sbjct: 98189 agagggcggtgatccagtggacgctggacccggcgg 98154
>gb|AC169375.4| Sorghum bicolor clone SB_BBc0020O07, complete sequence Length = 117931 Score = 93.7 bits (47), Expect = 3e-16 Identities = 89/103 (86%) Strand = Plus / Minus Query: 156 ccgcgacgccgcgcagcgccgcgccatccgcaagcactacgccgacacctacggcgagga 215 ||||||||||||||||||||||||||||||| ||||||||| || |||||||||| Sbjct: 48695 ccgcgacgccgcgcagcgccgcgccatccgccgcgcctacgccgaggcccacggcgagga 48636 Query: 216 gctgctccggagcatcaccgacgagatctcaggcgacttcgag 258 ||| ||||| |||||| ||||||||||| |||||||||||| Sbjct: 48635 gctcctccgctccatcacggacgagatctccggcgacttcgag 48593 Score = 63.9 bits (32), Expect = 3e-07 Identities = 35/36 (97%) Strand = Plus / Minus Query: 257 agagggccgtgatcctgtggacgctggaccccgcgg 292 ||||||||||||||||||||||||||||||| |||| Sbjct: 48489 agagggccgtgatcctgtggacgctggacccagcgg 48454
>ref|XM_365261.1| Magnaporthe grisea 70-15 predicted protein (MG01963.4) partial mRNA Length = 603 Score = 46.1 bits (23), Expect = 0.062 Identities = 23/23 (100%) Strand = Plus / Plus Query: 11 caccggcaggcaggcacccggtc 33 ||||||||||||||||||||||| Sbjct: 402 caccggcaggcaggcacccggtc 424
>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence Length = 3173005 Score = 44.1 bits (22), Expect = 0.24 Identities = 25/26 (96%) Strand = Plus / Plus Query: 157 cgcgacgccgcgcagcgccgcgccat 182 |||| ||||||||||||||||||||| Sbjct: 2138425 cgcgtcgccgcgcagcgccgcgccat 2138450
>gb|U75930.2|OPU75930 Orgyia pseudotsugata multicapsid nucleopolyhedrovirus, complete genome Length = 131995 Score = 44.1 bits (22), Expect = 0.24 Identities = 22/22 (100%) Strand = Plus / Minus Query: 158 gcgacgccgcgcagcgccgcgc 179 |||||||||||||||||||||| Sbjct: 41779 gcgacgccgcgcagcgccgcgc 41758
>dbj|BA000013.4| Mesorhizobium loti MAFF303099 pMLa DNA, cpmplete genome Length = 351911 Score = 44.1 bits (22), Expect = 0.24 Identities = 25/26 (96%) Strand = Plus / Plus Query: 142 tccatcctgggccaccgcgacgccgc 167 |||||||||| ||||||||||||||| Sbjct: 81669 tccatcctggtccaccgcgacgccgc 81694
>gb|AF503433.1| Sorghum bicolor BAC 170F8, complete sequence Length = 142376 Score = 42.1 bits (21), Expect = 0.97 Identities = 24/25 (96%) Strand = Plus / Plus Query: 162 cgccgcgcagcgccgcgccatccgc 186 |||||||| |||||||||||||||| Sbjct: 44848 cgccgcgccgcgccgcgccatccgc 44872
>gb|AC112208.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0015P05 map C53961S, complete sequence Length = 175121 Score = 42.1 bits (21), Expect = 0.97 Identities = 21/21 (100%) Strand = Plus / Plus Query: 164 ccgcgcagcgccgcgccatcc 184 ||||||||||||||||||||| Sbjct: 40183 ccgcgcagcgccgcgccatcc 40203
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 42.1 bits (21), Expect = 0.97 Identities = 21/21 (100%) Strand = Plus / Plus Query: 157 cgcgacgccgcgcagcgccgc 177 ||||||||||||||||||||| Sbjct: 62205 cgcgacgccgcgcagcgccgc 62225
>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome Length = 3345170 Score = 42.1 bits (21), Expect = 0.97 Identities = 24/25 (96%) Strand = Plus / Minus Query: 159 cgacgccgcgcagcgccgcgccatc 183 |||||||||||||| |||||||||| Sbjct: 978422 cgacgccgcgcagctccgcgccatc 978398
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 42.1 bits (21), Expect = 0.97 Identities = 21/21 (100%) Strand = Plus / Minus Query: 157 cgcgacgccgcgcagcgccgc 177 ||||||||||||||||||||| Sbjct: 446565 cgcgacgccgcgcagcgccgc 446545
>ref|NM_204293.1| Gallus gallus calcium channel, voltage-dependent, L type, alpha 1B subunit (CACNA1B), mRNA Length = 7966 Score = 42.1 bits (21), Expect = 0.97 Identities = 21/21 (100%) Strand = Plus / Plus Query: 147 cctgggccaccgcgacgccgc 167 ||||||||||||||||||||| Sbjct: 6904 cctgggccaccgcgacgccgc 6924
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 42.1 bits (21), Expect = 0.97 Identities = 21/21 (100%) Strand = Plus / Plus Query: 164 ccgcgcagcgccgcgccatcc 184 ||||||||||||||||||||| Sbjct: 11253825 ccgcgcagcgccgcgccatcc 11253845
>gb|AF173015.1|AF173015 Gallus gallus N-type calcium channel alpha-1B cdB4 variant (CACHA1B) mRNA, complete cds Length = 7887 Score = 42.1 bits (21), Expect = 0.97 Identities = 21/21 (100%) Strand = Plus / Plus Query: 147 cctgggccaccgcgacgccgc 167 ||||||||||||||||||||| Sbjct: 6791 cctgggccaccgcgacgccgc 6811
>gb|AF173014.1|AF173014 Gallus gallus N-type calcium channel alpha-1B cdB3 variant (CACHA1B) mRNA, complete cds Length = 7892 Score = 42.1 bits (21), Expect = 0.97 Identities = 21/21 (100%) Strand = Plus / Plus Query: 147 cctgggccaccgcgacgccgc 167 ||||||||||||||||||||| Sbjct: 6796 cctgggccaccgcgacgccgc 6816
>gb|AF173013.1|AF173013 Gallus gallus N-type calcium channel alpha-1B cdB2 variant (CACHA1B) mRNA, complete cds Length = 7995 Score = 42.1 bits (21), Expect = 0.97 Identities = 21/21 (100%) Strand = Plus / Plus Query: 147 cctgggccaccgcgacgccgc 167 ||||||||||||||||||||| Sbjct: 6899 cctgggccaccgcgacgccgc 6919
>gb|AF173012.1|AF173012 Gallus gallus N-type calcium channel alpha-1B cdB1 variant (CACHA1B) mRNA, complete cds Length = 8000 Score = 42.1 bits (21), Expect = 0.97 Identities = 21/21 (100%) Strand = Plus / Plus Query: 147 cctgggccaccgcgacgccgc 167 ||||||||||||||||||||| Sbjct: 6904 cctgggccaccgcgacgccgc 6924
>gb|AF173017.1|AF173017 Gallus gallus N-type calcium channel alpha-1B cdB6 variant (CACHA1B) mRNA, complete cds Length = 7962 Score = 42.1 bits (21), Expect = 0.97 Identities = 21/21 (100%) Strand = Plus / Plus Query: 147 cctgggccaccgcgacgccgc 167 ||||||||||||||||||||| Sbjct: 6866 cctgggccaccgcgacgccgc 6886
>gb|AF173019.1|AF173019 Gallus gallus N-type calcium channel alpha-1B cdB8 variant (CACHA1B) mRNA, complete cds Length = 7920 Score = 42.1 bits (21), Expect = 0.97 Identities = 21/21 (100%) Strand = Plus / Plus Query: 147 cctgggccaccgcgacgccgc 167 ||||||||||||||||||||| Sbjct: 6824 cctgggccaccgcgacgccgc 6844
>gb|AF173018.1|AF173018 Gallus gallus N-type calcium channel alpha-1B cdB7 variant (CACHA1B) mRNA, complete cds Length = 7925 Score = 42.1 bits (21), Expect = 0.97 Identities = 21/21 (100%) Strand = Plus / Plus Query: 147 cctgggccaccgcgacgccgc 167 ||||||||||||||||||||| Sbjct: 6829 cctgggccaccgcgacgccgc 6849
>gb|AF173016.1|AF173016 Gallus gallus N-type calcium channel alpha-1B cdB5 variant (CACHA1B) mRNA, complete cds Length = 7967 Score = 42.1 bits (21), Expect = 0.97 Identities = 21/21 (100%) Strand = Plus / Plus Query: 147 cctgggccaccgcgacgccgc 167 ||||||||||||||||||||| Sbjct: 6871 cctgggccaccgcgacgccgc 6891
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 42.1 bits (21), Expect = 0.97 Identities = 21/21 (100%) Strand = Plus / Plus Query: 164 ccgcgcagcgccgcgccatcc 184 ||||||||||||||||||||| Sbjct: 11333014 ccgcgcagcgccgcgccatcc 11333034
>gb|CP000150.1| Burkholderia sp. 383 chromosome 3, complete sequence Length = 1395069 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 159 cgacgccgcgcagcgccgcg 178 |||||||||||||||||||| Sbjct: 398619 cgacgccgcgcagcgccgcg 398600
>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence Length = 3181762 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 157 cgcgacgccgcgcagcgccgcgcc 180 |||| ||||||||||||||||||| Sbjct: 818197 cgcgtcgccgcgcagcgccgcgcc 818220
>gb|CP000316.1| Polaromonas sp. JS666, complete genome Length = 5200264 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 159 cgacgccgcgcagcgccgcgccat 182 ||||| |||||||||||||||||| Sbjct: 5093055 cgacggcgcgcagcgccgcgccat 5093078
>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome Length = 4940217 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 160 gacgccgcgcagcgccgcgccatc 183 ||||||||||||||||||| |||| Sbjct: 3102973 gacgccgcgcagcgccgcggcatc 3102950
>gb|AE005970.1| Caulobacter crescentus CB15 section 296 of 359 of the complete genome Length = 12680 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 177 cgccatccgcaagcactacgccga 200 |||||||||||||| ||||||||| Sbjct: 726 cgccatccgcaagctctacgccga 703
>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence Length = 2325379 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 157 cgcgacgccgcgcagcgccgcgcc 180 |||| ||||||||||||||||||| Sbjct: 1711686 cgcgtcgccgcgcagcgccgcgcc 1711709
>gb|AE006470.1| Chlorobium tepidum TLS, complete genome Length = 2154946 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 179 ccatccgcaagcactacgccgaca 202 |||||||||||| ||||||||||| Sbjct: 1898660 ccatccgcaagctctacgccgaca 1898683
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 93 cctccgcaaggccttccaag 112 |||||||||||||||||||| Sbjct: 986455 cctccgcaaggccttccaag 986474
>gb|CP000252.1| Syntrophus aciditrophicus SB, complete genome Length = 3179300 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 8 cggcaccggcaggcaggcacccgg 31 |||||||||||||||||| ||||| Sbjct: 2741828 cggcaccggcaggcaggctcccgg 2741805
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 154 caccgcgacgccgcgcagcg 173 |||||||||||||||||||| Sbjct: 4897709 caccgcgacgccgcgcagcg 4897690
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 151 ggccaccgcgacgccgcgcagcgc 174 |||||||||| ||||||||||||| Sbjct: 4026499 ggccaccgcgccgccgcgcagcgc 4026476
>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence Length = 3716413 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 181 atccgcaagcactacgccga 200 |||||||||||||||||||| Sbjct: 1732392 atccgcaagcactacgccga 1732411
>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome Length = 4941439 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 160 gacgccgcgcagcgccgcgccatc 183 ||||||||||||||||||| |||| Sbjct: 3110199 gacgccgcgcagcgccgcggcatc 3110176 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,670,738 Number of Sequences: 3902068 Number of extensions: 1670738 Number of successful extensions: 37054 Number of sequences better than 10.0: 46 Number of HSP's better than 10.0 without gapping: 46 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 35147 Number of HSP's gapped (non-prelim): 1896 length of query: 292 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 270 effective length of database: 17,147,199,772 effective search space: 4629743938440 effective search space used: 4629743938440 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
